Query         gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 338
No_of_seqs    164 out of 1985
Neff          6.7 
Searched_HMMs 13730
Date          Wed Jun  1 05:24:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780401.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1nija1 c.37.1.10 (A:2-223) Hy  96.7 0.00019 1.4E-08   48.9   1.1  137   43-196     2-161 (222)
  2 d1j8yf2 c.37.1.10 (F:87-297) G  96.3  0.0027 1.9E-07   40.8   4.8   81   44-143    11-103 (211)
  3 d1np6a_ c.37.1.10 (A:) Molybdo  95.8   0.008 5.8E-07   37.5   5.3   41   44-86      2-42  (170)
  4 d1xjca_ c.37.1.10 (A:) Molybdo  95.7  0.0062 4.5E-07   38.3   4.4   39   46-86      3-41  (165)
  5 d2qy9a2 c.37.1.10 (A:285-495)   95.5   0.008 5.8E-07   37.5   4.5   79   46-143    12-100 (211)
  6 d1vmaa2 c.37.1.10 (A:82-294) G  95.4  0.0091 6.7E-07   37.1   4.4   79   46-143    14-102 (213)
  7 d1okkd2 c.37.1.10 (D:97-303) G  95.3   0.008 5.8E-07   37.5   3.9   80   46-144     9-98  (207)
  8 d1ihua1 c.37.1.10 (A:1-296) Ar  95.1  0.0071 5.2E-07   37.8   3.2   29   54-82     16-44  (296)
  9 d1ls1a2 c.37.1.10 (A:89-295) G  95.0   0.012 8.7E-07   36.2   4.1   28   54-81     18-45  (207)
 10 d1g3qa_ c.37.1.10 (A:) Cell di  94.9   0.013 9.3E-07   36.0   4.0   36   45-81      3-38  (237)
 11 d1cp2a_ c.37.1.10 (A:) Nitroge  94.4   0.019 1.4E-06   34.8   3.9   35   46-82      3-37  (269)
 12 d2gc6a2 c.72.2.2 (A:1-296) Fol  94.4    0.18 1.3E-05   27.8   9.0  109   30-148    26-150 (296)
 13 d1o5za2 c.72.2.2 (A:-2-293) Fo  94.3    0.14 9.8E-06   28.7   8.0  110   33-147    33-152 (296)
 14 d1ihua2 c.37.1.10 (A:308-586)   94.3   0.014   1E-06   35.7   3.0   32   54-85     28-59  (279)
 15 d2afhe1 c.37.1.10 (E:1-289) Ni  93.8   0.031 2.3E-06   33.3   4.0   34   46-81      4-37  (289)
 16 d1gm5a3 c.37.1.19 (A:286-549)   93.1   0.013 9.1E-07   36.1   1.0  102   55-168   113-221 (264)
 17 d1byia_ c.37.1.10 (A:) Dethiob  92.7   0.037 2.7E-06   32.7   3.0   27   54-80      9-36  (224)
 18 d2eyqa3 c.37.1.19 (A:546-778)   92.6   0.041   3E-06   32.4   3.1  101   54-168    84-193 (233)
 19 d1hyqa_ c.37.1.10 (A:) Cell di  92.5   0.042   3E-06   32.4   3.0   36   45-81      2-37  (232)
 20 d1a7ja_ c.37.1.6 (A:) Phosphor  91.5    0.11 7.9E-06   29.4   4.2   38   43-82      3-40  (288)
 21 d2qm8a1 c.37.1.10 (A:5-327) Me  91.2    0.16 1.1E-05   28.3   4.8  133   43-196    50-201 (323)
 22 d2p67a1 c.37.1.10 (A:1-327) LA  90.6    0.19 1.4E-05   27.7   4.8  134   43-198    53-206 (327)
 23 d1yrba1 c.37.1.10 (A:1-244) AT  90.1   0.054   4E-06   31.6   1.6   36   47-86      4-39  (244)
 24 d1gkub1 c.37.1.16 (B:1-250) He  88.9    0.43 3.1E-05   25.2   5.5   95   54-162    66-172 (237)
 25 d1gsia_ c.37.1.1 (A:) Thymidyl  88.8    0.23 1.7E-05   27.1   4.0   30   49-81      6-35  (208)
 26 d4tmka_ c.37.1.1 (A:) Thymidyl  88.3    0.21 1.5E-05   27.4   3.5   33   54-86     10-42  (210)
 27 d2jfga3 c.72.2.1 (A:94-297) UD  88.1    0.35 2.5E-05   25.8   4.6   36   42-81      9-44  (204)
 28 d1khta_ c.37.1.1 (A:) Adenylat  87.8    0.14   1E-05   28.7   2.4   29   55-83     10-38  (190)
 29 d2i3ba1 c.37.1.11 (A:1-189) Ca  87.1    0.18 1.3E-05   27.9   2.6   28   55-82     10-37  (189)
 30 d1nksa_ c.37.1.1 (A:) Adenylat  84.3     0.3 2.2E-05   26.3   2.6   28   56-83     11-38  (194)
 31 d1bifa1 c.37.1.7 (A:37-249) 6-  83.3    0.35 2.5E-05   25.8   2.6   35   46-83      5-39  (213)
 32 d1nn5a_ c.37.1.1 (A:) Thymidyl  83.3    0.43 3.1E-05   25.2   3.1   30   55-85     12-41  (209)
 33 d1odfa_ c.37.1.6 (A:) Hypothet  82.6     1.5 0.00011   21.3   6.2   88   22-118     5-97  (286)
 34 d1f0ka_ c.87.1.2 (A:) Peptidog  79.7    0.72 5.2E-05   23.6   3.2   33   53-85      6-39  (351)
 35 d1nlfa_ c.37.1.11 (A:) Hexamer  77.4     2.2 0.00016   20.2   6.4   48   50-102    29-80  (274)
 36 d1rz3a_ c.37.1.6 (A:) Hypothet  75.9       1 7.5E-05   22.5   3.1   41   41-83     18-59  (198)
 37 g1qhh.1 c.37.1.19 (A:,B:,C:,D:  75.5     1.4  0.0001   21.5   3.7   39   43-86     24-66  (623)
 38 d1osna_ c.37.1.1 (A:) Thymidin  75.1     1.4  0.0001   21.5   3.6   33   46-81      8-40  (331)
 39 d1sq5a_ c.37.1.6 (A:) Pantothe  75.0     2.5 0.00018   19.7   8.3   45   39-84     74-121 (308)
 40 d1p3da3 c.72.2.1 (A:107-321) U  74.9    0.99 7.2E-05   22.6   2.8   36   45-84     13-48  (215)
 41 d1gg4a4 c.72.2.1 (A:99-312) UD  74.2       1 7.5E-05   22.5   2.7   33   43-79      1-33  (214)
 42 d1j6ua3 c.72.2.1 (A:89-295) UD  73.7     2.2 0.00016   20.2   4.3   38   43-84     13-50  (207)
 43 d1e8ca3 c.72.2.1 (A:104-337) U  73.7     1.5 0.00011   21.3   3.5   34   44-81      5-38  (234)
 44 d1cr2a_ c.37.1.11 (A:) Gene 4   73.1     1.3 9.8E-05   21.7   3.1   32   50-81     35-71  (277)
 45 d1fnna2 c.37.1.20 (A:1-276) CD  72.2     1.9 0.00014   20.5   3.7   35   42-79     42-76  (276)
 46 d1hjsa_ c.1.8.3 (A:) Beta-1,4-  71.5     2.8  0.0002   19.4   4.4   44  246-289   206-251 (332)
 47 d1qvra3 c.37.1.20 (A:536-850)   71.5     2.6 0.00019   19.7   4.2   22   55-76     62-83  (315)
 48 d1l8qa2 c.37.1.20 (A:77-289) C  71.1     1.6 0.00012   21.1   3.1   35   44-81     37-71  (213)
 49 d1z63a1 c.37.1.19 (A:432-661)   70.7     3.1 0.00023   19.1   4.8   20   55-74     40-59  (230)
 50 d2piaa2 c.25.1.2 (A:104-223) P  70.6     1.1 8.1E-05   22.2   2.2   39   44-89      9-47  (120)
 51 d1g5ta_ c.37.1.11 (A:) ATP:cor  69.8     3.3 0.00024   18.9   5.2   33   53-86      9-41  (157)
 52 d1ep3b2 c.25.1.3 (B:103-262) D  69.4     1.2 8.9E-05   21.9   2.2   28   52-80     13-40  (160)
 53 d1tf7a2 c.37.1.11 (A:256-497)   68.9     1.9 0.00014   20.6   3.1   27   55-81     35-61  (242)
 54 d2i3da1 c.69.1.36 (A:2-219) Hy  68.8     3.1 0.00022   19.1   4.1   47   42-88     24-71  (218)
 55 d1qyca_ c.2.1.2 (A:) Phenylcou  68.7     2.2 0.00016   20.2   3.4   33   52-86      7-39  (307)
 56 d1jaya_ c.2.1.6 (A:) Coenzyme   68.3       3 0.00022   19.1   4.0   29   53-83      5-33  (212)
 57 d1uaaa1 c.37.1.19 (A:2-307) DE  68.0     1.5 0.00011   21.4   2.4   36   43-81     14-53  (306)
 58 d1rkxa_ c.2.1.2 (A:) CDP-gluco  67.7     3.3 0.00024   18.9   4.1   31   52-84     12-42  (356)
 59 d1y1la_ c.44.1.1 (A:) Arsenate  67.3     3.6 0.00026   18.6   4.3   32   45-84      3-34  (124)
 60 d1ye8a1 c.37.1.11 (A:1-178) Hy  67.3     1.8 0.00013   20.7   2.7   19   55-73      9-27  (178)
 61 d1yksa1 c.37.1.14 (A:185-324)   67.0     2.1 0.00015   20.3   3.0   27   55-81     16-43  (140)
 62 d1tvca2 c.25.1.2 (A:111-251) M  66.6     3.8 0.00027   18.5   5.3   30   40-73      5-34  (141)
 63 d1m8pa3 c.37.1.15 (A:391-573)   65.8     1.8 0.00013   20.7   2.5   28   54-81     14-41  (183)
 64 d1gvha3 c.25.1.5 (A:254-396) F  65.4       3 0.00022   19.2   3.5   27   43-73      6-32  (143)
 65 d1w5sa2 c.37.1.20 (A:7-293) CD  65.1     1.4 9.9E-05   21.6   1.7   20   55-74     55-74  (287)
 66 d1xgka_ c.2.1.2 (A:) Negative   64.9       4 0.00029   18.3   4.1   31   52-84      7-37  (350)
 67 d1wp9a1 c.37.1.19 (A:1-200) pu  64.9     3.6 0.00026   18.6   3.9   28   54-81     31-59  (200)
 68 d1rpna_ c.2.1.2 (A:) GDP-manno  64.8     4.1  0.0003   18.2   4.2   31   52-84      4-34  (321)
 69 d1in4a2 c.37.1.20 (A:17-254) H  64.1     2.4 0.00018   19.9   2.8   31   45-81     37-67  (238)
 70 d1krha2 c.25.1.2 (A:206-338) B  63.5     2.7 0.00019   19.5   3.0   28   42-73      4-31  (133)
 71 d2a5yb3 c.37.1.20 (B:109-385)   63.0     2.2 0.00016   20.1   2.5   22   46-70     47-68  (277)
 72 d2nqra3 c.57.1.2 (A:178-326) M  62.9     4.4 0.00032   18.0   4.4   69  175-245    56-135 (149)
 73 d1kjna_ c.115.1.1 (A:) Hypothe  62.5     2.9 0.00021   19.3   3.0   23   59-81     16-38  (152)
 74 d1veca_ c.37.1.19 (A:) DEAD bo  62.4     4.5 0.00033   17.9   4.3   95   55-160    49-154 (206)
 75 d1u94a1 c.37.1.11 (A:6-268) Re  62.4       3 0.00022   19.2   3.1   43   39-81     27-89  (263)
 76 d1viaa_ c.37.1.2 (A:) Shikimat  61.9     2.5 0.00019   19.7   2.6   23   45-70      2-24  (161)
 77 d1qyda_ c.2.1.2 (A:) Pinoresin  61.8     4.3 0.00031   18.1   3.8   32   52-85      7-38  (312)
 78 d1rzua_ c.87.1.8 (A:) Glycogen  61.7     1.5 0.00011   21.3   1.5   32   53-86     15-46  (477)
 79 d1uz5a3 c.57.1.2 (A:181-328) M  61.6     4.6 0.00034   17.9   4.4   69  175-245    56-135 (148)
 80 d1m7ga_ c.37.1.4 (A:) Adenosin  61.4     1.9 0.00014   20.6   1.9   29   55-83     33-61  (208)
 81 d1cqxa3 c.25.1.5 (A:262-403) F  61.4     2.7 0.00019   19.5   2.7   28   43-74      5-32  (142)
 82 d1w36d1 c.37.1.19 (D:2-360) Ex  61.1       3 0.00022   19.2   2.9   18   55-72    172-189 (359)
 83 d1lw7a2 c.37.1.1 (A:220-411) T  60.9     1.6 0.00011   21.2   1.4   26   42-70      6-31  (192)
 84 d1a1va1 c.37.1.14 (A:190-325)   60.4     2.9 0.00021   19.2   2.8   24   55-81     17-40  (136)
 85 d1eg7a_ c.37.1.10 (A:) Formylt  60.2     3.4 0.00025   18.8   3.1   39   44-82     51-91  (549)
 86 d1uj2a_ c.37.1.6 (A:) Uridine-  60.0     2.9 0.00021   19.3   2.6   28   55-82     11-43  (213)
 87 d1n7ha_ c.2.1.2 (A:) GDP-manno  60.0     4.9 0.00036   17.7   4.1   30   52-83      5-34  (339)
 88 d1pjra1 c.37.1.19 (A:1-318) DE  59.6       5 0.00036   17.6   4.4   84  250-334   218-308 (318)
 89 d1xp8a1 c.37.1.11 (A:15-282) R  58.7     3.4 0.00025   18.7   2.9   44   38-81     29-92  (268)
 90 d1ckea_ c.37.1.1 (A:) CMP kina  58.1     3.4 0.00024   18.8   2.7   32   44-83      3-35  (225)
 91 d1ddga2 c.25.1.4 (A:447-599) S  58.0     5.3 0.00038   17.4   4.4   36   41-80      4-39  (153)
 92 d1sxja2 c.37.1.20 (A:295-547)   57.1     1.8 0.00013   20.7   1.2   32   45-82     54-85  (253)
 93 d1t2aa_ c.2.1.2 (A:) GDP-manno  56.9     5.5  0.0004   17.3   4.1   29   52-82      5-33  (347)
 94 d1zaka1 c.37.1.1 (A:3-127,A:15  56.6     3.9 0.00028   18.4   2.9   25   43-70      3-27  (189)
 95 d1o51a_ d.58.5.4 (A:) Hypothet  56.5     5.6 0.00041   17.3   4.0   74   59-142    18-97  (102)
 96 d2bmfa2 c.37.1.14 (A:178-482)   56.3     4.7 0.00034   17.8   3.2   53  222-283   178-232 (305)
 97 d1htwa_ c.37.1.18 (A:) Hypothe  56.3     1.9 0.00014   20.6   1.2   26   45-73     35-60  (158)
 98 d1tmka_ c.37.1.1 (A:) Thymidyl  55.3     2.1 0.00016   20.2   1.4   21   55-75     12-32  (214)
 99 d1ja1a3 c.25.1.4 (A:519-678) N  55.1     5.3 0.00039   17.4   3.3   27   40-70      4-30  (160)
100 d1wu2a3 c.57.1.2 (A:181-324) M  54.9       5 0.00036   17.6   3.2   21  222-244   110-130 (144)
101 d1hdoa_ c.2.1.2 (A:) Biliverdi  54.8     5.9 0.00043   17.1   4.1   32   52-85      7-38  (205)
102 d2ocpa1 c.37.1.1 (A:37-277) De  54.6     1.8 0.00013   20.7   0.9   27   48-77      7-33  (241)
103 d1n4wa1 c.3.1.2 (A:9-318,A:451  54.6       2 0.00015   20.4   1.1   32   44-83      3-34  (367)
104 d2bisa1 c.87.1.8 (A:1-437) Gly  53.8     5.1 0.00037   17.6   3.1   32   54-87     15-46  (437)
105 d1p9oa_ c.72.3.1 (A:) Phosphop  53.6     2.6 0.00019   19.6   1.6   38   41-83     31-69  (290)
106 d2bmwa2 c.25.1.1 (A:142-303) F  52.9     3.3 0.00024   18.9   2.0   28   41-72      4-31  (162)
107 d1lv7a_ c.37.1.20 (A:) AAA dom  52.7     4.3 0.00031   18.1   2.5   34   42-81     44-77  (256)
108 d1thta_ c.69.1.13 (A:) Myristo  52.6     6.4 0.00047   16.8   4.3   89   55-146    40-137 (302)
109 d1vl0a_ c.2.1.2 (A:) DTDP-4-de  52.6     6.4 0.00047   16.8   3.5   31   52-84      5-35  (281)
110 d1x6va3 c.37.1.4 (A:34-228) Ad  52.5     2.2 0.00016   20.1   1.1   30   55-84     28-57  (195)
111 d1sxje2 c.37.1.20 (E:4-255) Re  52.3     6.5 0.00047   16.8   4.1   27   45-74     35-61  (252)
112 d2bkaa1 c.2.1.2 (A:5-236) TAT-  52.2     6.2 0.00045   16.9   3.3   29   52-82     18-48  (232)
113 d1sxjc2 c.37.1.20 (C:12-238) R  51.7     2.3 0.00017   20.0   1.0   28   46-76     38-65  (227)
114 d1ukza_ c.37.1.1 (A:) Uridylat  51.0     4.4 0.00032   18.0   2.4   27   42-70      6-32  (196)
115 d1e9ra_ c.37.1.11 (A:) Bacteri  50.8     5.5  0.0004   17.3   2.8   33   46-81     53-85  (433)
116 d1iqpa2 c.37.1.20 (A:2-232) Re  50.7     2.6 0.00019   19.7   1.1   26   46-74     48-73  (231)
117 d1mo6a1 c.37.1.11 (A:1-269) Re  50.4     5.7 0.00041   17.2   2.9   26   56-81     70-95  (269)
118 d1qfja2 c.25.1.1 (A:98-232) NA  50.1     5.4 0.00039   17.4   2.7   28   42-73      4-31  (135)
119 d2c5aa1 c.2.1.2 (A:13-375) GDP  50.0       7 0.00051   16.6   4.1   30   52-83     19-48  (363)
120 d1ixsb2 c.37.1.20 (B:4-242) Ho  49.9       7 0.00051   16.6   4.5   34   42-81     34-67  (239)
121 d1svsa1 c.37.1.8 (A:32-60,A:18  49.9     3.6 0.00026   18.7   1.8   21   44-67      3-23  (195)
122 d1w44a_ c.37.1.11 (A:) NTPase   49.7     3.2 0.00024   18.9   1.5   25   48-72    122-149 (321)
123 d2d00a1 c.149.1.1 (A:6-109) V-  49.6     6.9  0.0005   16.6   3.2   55  229-292     2-58  (104)
124 d1ixza_ c.37.1.20 (A:) AAA dom  49.6     5.1 0.00037   17.5   2.5   33   43-81     42-74  (247)
125 d2ftsa3 c.57.1.2 (A:499-653) G  49.6     7.1 0.00052   16.5   4.4   19  226-244   122-140 (155)
126 d2pd4a1 c.2.1.2 (A:2-275) Enoy  49.5     7.1 0.00052   16.5   3.8   32   52-83      9-40  (274)
127 d2b69a1 c.2.1.2 (A:4-315) UDP-  49.0     7.3 0.00053   16.5   4.6   33   52-86      5-37  (312)
128 d1gvnb_ c.37.1.21 (B:) Plasmid  48.8     3.6 0.00026   18.6   1.7   30   46-81     35-64  (273)
129 d1d1qa_ c.44.1.1 (A:) Tyrosine  48.5     4.8 0.00035   17.8   2.2   40   41-85      5-48  (159)
130 d1vhta_ c.37.1.1 (A:) Dephosph  48.5     5.2 0.00038   17.5   2.4   25   46-77      5-30  (208)
131 d1fnda2 c.25.1.1 (A:155-314) F  48.2       5 0.00037   17.6   2.3   28   41-72      6-33  (160)
132 d1tf7a1 c.37.1.11 (A:14-255) C  48.1     6.3 0.00046   16.9   2.8   29   55-83     35-64  (242)
133 d1di6a_ c.57.1.1 (A:) MogA {Es  48.0     4.1  0.0003   18.2   1.8   21  224-244   125-145 (190)
134 d1t6na_ c.37.1.19 (A:) Spliceo  47.7     7.6 0.00055   16.3   3.7   96   55-161    47-154 (207)
135 d1u7pa_ c.108.1.17 (A:) Magnes  47.3     7.7 0.00056   16.3   3.5   40  230-277    97-136 (164)
136 d1fdra2 c.25.1.1 (A:101-248) F  47.1     3.1 0.00023   19.1   1.1   21   53-74     12-32  (148)
137 d1rkba_ c.37.1.1 (A:) Adenylat  47.1     3.8 0.00028   18.5   1.5   16   55-70     13-28  (173)
138 d1sxjb2 c.37.1.20 (B:7-230) Re  46.7     2.9 0.00021   19.2   0.9   21   56-76     46-66  (224)
139 d1pn3a_ c.87.1.5 (A:) TDP-epi-  46.5     6.8  0.0005   16.6   2.8   32   53-84      6-38  (391)
140 d1umka2 c.25.1.1 (A:154-300) c  46.3     4.4 0.00032   18.0   1.8   33   42-74     11-45  (147)
141 d1sxjd2 c.37.1.20 (D:26-262) R  46.0       4 0.00029   18.3   1.5   25   46-73     36-60  (237)
142 d1r7ra3 c.37.1.20 (A:471-735)   45.7     5.5  0.0004   17.3   2.2   33   43-81     41-73  (265)
143 d1uuya_ c.57.1.1 (A:) Plant CN  45.5     4.1  0.0003   18.2   1.5   19  225-243   130-148 (161)
144 d2r8ba1 c.69.1.14 (A:44-246) U  45.2     8.2  0.0006   16.1   3.6   53  222-275   143-202 (203)
145 d1d2na_ c.37.1.20 (A:) Hexamer  44.9     4.3 0.00031   18.1   1.5   24   45-71     42-65  (246)
146 d1jl3a_ c.44.1.1 (A:) Arsenate  44.5     5.9 0.00043   17.1   2.2   34   44-84      4-37  (137)
147 d1uf9a_ c.37.1.1 (A:) Dephosph  44.5     4.3 0.00031   18.1   1.5   19   55-77     12-30  (191)
148 d1x94a_ c.80.1.3 (A:) Phosphoh  44.2     8.5 0.00062   16.0   4.3   25  267-291   129-154 (191)
149 d1oc2a_ c.2.1.2 (A:) dTDP-gluc  44.1     8.5 0.00062   15.9   3.7   30   52-83      6-35  (346)
150 d2iw1a1 c.87.1.8 (A:2-371) Lip  44.1     7.2 0.00052   16.5   2.6   33   54-88     12-44  (370)
151 d1ofha_ c.37.1.20 (A:) HslU {H  43.9     4.5 0.00033   17.9   1.5   26   43-71     49-74  (309)
152 d1kaga_ c.37.1.2 (A:) Shikimat  43.9     3.9 0.00028   18.4   1.2   23   45-70      4-26  (169)
153 d2fz4a1 c.37.1.19 (A:24-229) D  43.9     6.6 0.00048   16.7   2.4   13   56-68     95-107 (206)
154 d1p3da1 c.5.1.1 (A:11-106) UDP  43.7     4.4 0.00032   18.0   1.4   23   53-79     15-37  (96)
155 d1db3a_ c.2.1.2 (A:) GDP-manno  43.7     8.7 0.00063   15.9   3.8   30   52-83      5-34  (357)
156 d2j0sa1 c.37.1.19 (A:22-243) P  43.2     8.8 0.00064   15.9   4.0   96   55-161    63-168 (222)
157 d1ek6a_ c.2.1.2 (A:) Uridine d  42.9     8.9 0.00065   15.8   4.7   34   52-87      6-42  (346)
158 d1p6xa_ c.37.1.1 (A:) Thymidin  42.5     6.7 0.00049   16.7   2.2   31   46-80      9-39  (333)
159 d1sb8a_ c.2.1.2 (A:) UDP-N-ace  42.3     9.1 0.00066   15.8   4.1   29   52-82     20-48  (341)
160 d1udca_ c.2.1.2 (A:) Uridine d  41.9     9.2 0.00067   15.7   4.1   29   52-82      4-32  (338)
161 d1svma_ c.37.1.20 (A:) Papillo  41.9     5.1 0.00037   17.5   1.5   17   55-71    163-179 (362)
162 d2g0ta1 c.37.1.10 (A:1-338) Hy  41.8     9.2 0.00067   15.7   3.6  122   44-177    13-154 (338)
163 d1e6ca_ c.37.1.2 (A:) Shikimat  41.2     9.4 0.00068   15.7   2.8   24   44-70      3-26  (170)
164 d1njfa_ c.37.1.20 (A:) delta p  40.3     9.7 0.00071   15.6   3.6   30   41-73     32-61  (239)
165 d1ur4a_ c.1.8.3 (A:) Beta-1,4-  40.1     9.8 0.00071   15.5   4.5   64  224-288   189-258 (387)
166 d1nnla_ c.108.1.4 (A:) Phospho  39.6     8.6 0.00063   15.9   2.4   26   60-85     84-109 (217)
167 d2fi1a1 c.108.1.3 (A:4-190) Pu  39.4     8.6 0.00063   15.9   2.4   23  233-257   136-158 (187)
168 d1p9ra_ c.37.1.11 (A:) Extrace  39.4      10 0.00073   15.5   7.2   20  224-243   229-248 (401)
169 d2fuka1 c.69.1.36 (A:3-220) XC  39.2      10 0.00074   15.4   3.5   44   45-88     38-82  (218)
170 d1zh2a1 c.23.1.1 (A:2-120) Tra  39.0      10 0.00074   15.4   3.8   20  224-243    73-92  (119)
171 d1zcba2 c.37.1.8 (A:47-75,A:20  38.8     6.9  0.0005   16.6   1.8   20   44-66      3-22  (200)
172 d2a9pa1 c.23.1.1 (A:2-118) DNA  38.8      10 0.00074   15.4   3.8   26  116-141    26-51  (117)
173 d1iira_ c.87.1.5 (A:) UDP-gluc  38.7      10 0.00075   15.4   2.8   33   52-84      5-38  (401)
174 d2btma_ c.1.1.1 (A:) Triosepho  38.5     7.6 0.00056   16.3   2.0   14  228-241   209-222 (251)
175 d1qhxa_ c.37.1.3 (A:) Chloramp  38.3     5.5  0.0004   17.3   1.2   17   55-71     12-28  (178)
176 d1wrba1 c.37.1.19 (A:164-401)   38.0      11 0.00076   15.3   4.8   59   55-116    67-126 (238)
177 d1ly1a_ c.37.1.1 (A:) Polynucl  37.9     7.4 0.00054   16.4   1.9   23   55-81     11-33  (152)
178 d2cnda2 c.25.1.1 (A:125-270) N  37.5     6.8  0.0005   16.6   1.6   21   53-73     18-38  (146)
179 d2bdta1 c.37.1.25 (A:1-176) Hy  37.4     5.4 0.00039   17.4   1.1   17   55-71     11-27  (176)
180 d2vp4a1 c.37.1.1 (A:12-208) De  37.3     2.5 0.00018   19.8  -0.7   30   44-80     10-39  (197)
181 d1knqa_ c.37.1.17 (A:) Glucona  36.7     6.8  0.0005   16.6   1.5   17   54-70     14-30  (171)
182 d1z45a2 c.2.1.2 (A:11-357) Uri  36.7      11  0.0008   15.2   6.7   30   52-83      5-34  (347)
183 d2p6ra3 c.37.1.19 (A:1-202) He  36.6     6.1 0.00045   17.0   1.3   22  222-243   172-194 (202)
184 d1y63a_ c.37.1.1 (A:) Probable  36.5     5.6 0.00041   17.2   1.1   25   44-71      6-30  (174)
185 d1e32a2 c.37.1.20 (A:201-458)   36.1     6.1 0.00045   17.0   1.2   33   43-81     38-70  (258)
186 d1e2ka_ c.37.1.1 (A:) Thymidin  36.1     5.7 0.00042   17.2   1.1   23   48-73      9-31  (329)
187 d3raba_ c.37.1.8 (A:) Rab3a {R  36.1      10 0.00076   15.3   2.4   22   44-68      6-27  (169)
188 d1xhfa1 c.23.1.1 (A:2-122) Aer  35.8      11 0.00083   15.1   4.3   17  224-240    75-91  (121)
189 d2iyva1 c.37.1.2 (A:2-166) Shi  35.5     7.4 0.00054   16.4   1.5   22   46-70      4-25  (165)
190 d1qkka_ c.23.1.1 (A:) Transcri  35.3      12 0.00084   15.0   4.3   25  117-141    27-51  (140)
191 d1tzfa_ c.68.1.13 (A:) Glucose  35.2      12 0.00084   15.0   3.0   39   40-86     21-59  (259)
192 d1jjva_ c.37.1.1 (A:) Dephosph  35.2     7.3 0.00053   16.4   1.5   23   48-77      7-29  (205)
193 d1qsga_ c.2.1.2 (A:) Enoyl-ACP  34.9      12 0.00085   15.0   3.7   31   52-82      9-39  (258)
194 d3coxa1 c.3.1.2 (A:5-318,A:451  34.6     7.6 0.00055   16.3   1.5   32   44-83      8-39  (370)
195 d1tk9a_ c.80.1.3 (A:) Phosphoh  34.3      12 0.00087   14.9   4.8   12  126-137   129-140 (188)
196 d1x1ra1 c.37.1.8 (A:10-178) Ra  33.5      12 0.00088   14.9   2.4   20   45-67      6-25  (169)
197 d1z3ix2 c.37.1.19 (X:92-389) R  33.1      12 0.00091   14.8   3.1   19   56-74     89-107 (298)
198 d1foba_ c.1.8.3 (A:) Beta-1,4-  33.0      12 0.00091   14.8   4.4   65  223-287   174-250 (334)
199 d2bcjq2 c.37.1.8 (Q:38-66,Q:18  32.9     9.3 0.00068   15.7   1.7   22   44-68      3-24  (200)
200 d1e5qa1 c.2.1.3 (A:2-124,A:392  32.8      13 0.00092   14.8   3.6   32   51-84      4-35  (182)
201 d2atva1 c.37.1.8 (A:5-172) Ras  32.8      10 0.00076   15.3   2.0   22   43-67      2-23  (168)
202 d1f20a2 c.25.1.4 (A:1233-1397)  32.8      13 0.00092   14.7   3.2   48  223-278   111-158 (165)
203 d1r6bx2 c.37.1.20 (X:169-436)   32.7      13 0.00092   14.7   3.2   27   44-73     40-66  (268)
204 d1zp6a1 c.37.1.25 (A:6-181) Hy  32.6     6.3 0.00046   16.9   0.8   24   55-81     13-36  (176)
205 d1jbka_ c.37.1.20 (A:) ClpB, A  32.0     9.6  0.0007   15.6   1.7   27   44-73     44-70  (195)
206 d1p5zb_ c.37.1.1 (B:) Deoxycyt  31.9     1.8 0.00013   20.7  -2.0   30   48-80      7-36  (241)
207 d2erxa1 c.37.1.8 (A:6-176) di-  31.6      11 0.00078   15.2   1.9   20   45-67      4-23  (171)
208 d1vzya2 g.81.1.1 (A:234-290) H  31.6      13 0.00096   14.6   2.7   39  234-272    18-56  (57)
209 d1vjpa2 d.81.1.3 (A:210-316) H  31.2      12 0.00086   15.0   2.0   33   56-88      1-34  (107)
210 d1trea_ c.1.1.1 (A:) Triosepho  31.1      12 0.00086   14.9   2.0   11   47-57      5-15  (255)
211 d1rifa_ c.37.1.23 (A:) DNA hel  31.1      13 0.00098   14.6   2.6   25   57-81     57-83  (282)
212 d1zina1 c.37.1.1 (A:1-125,A:16  30.9     9.7 0.00071   15.5   1.5   16   55-70      9-24  (182)
213 d2i1qa2 c.37.1.11 (A:65-322) D  30.7     5.5  0.0004   17.3   0.2   36   47-82     31-70  (258)
214 d1orra_ c.2.1.2 (A:) CDP-tyvel  30.6      14 0.00099   14.5   4.1   29   52-82      4-32  (338)
215 d1mh1a_ c.37.1.8 (A:) Rac {Hum  30.6      11  0.0008   15.2   1.8   21   44-67      6-26  (183)
216 d1lvga_ c.37.1.1 (A:) Guanylat  30.6      14 0.00099   14.5   2.6   25   45-72      2-26  (190)
217 d1j6ua1 c.5.1.1 (A:0-88) UDP-N  30.4     5.6 0.00041   17.2   0.3   22   53-78      8-29  (89)
218 d1gkma_ a.127.1.2 (A:) Histidi  30.4      14   0.001   14.5   2.6   40   46-85    101-140 (509)
219 d1r6da_ c.2.1.2 (A:) dTDP-gluc  30.1      14   0.001   14.4   4.7   29   52-82      4-32  (322)
220 d3ceda1 d.58.18.13 (A:247-341)  29.9      14   0.001   14.4   4.3   23   55-80     26-48  (95)
221 d1fjha_ c.2.1.2 (A:) 3-alpha-h  29.8      14   0.001   14.4   4.1   29   52-82      5-33  (257)
222 d1pfka_ c.89.1.1 (A:) ATP-depe  29.8      14   0.001   14.4   3.5  103   49-159     5-124 (320)
223 d1s3ga1 c.37.1.1 (A:1-125,A:16  29.8      10 0.00076   15.3   1.5   17   54-70      8-24  (182)
224 d2cdna1 c.37.1.1 (A:1-181) Ade  29.7      10 0.00076   15.3   1.5   16   55-70      9-24  (181)
225 d1krwa_ c.23.1.1 (A:) NTRC rec  29.6      14   0.001   14.4   4.7   25  117-141    30-54  (123)
226 d1rrva_ c.87.1.5 (A:) TDP-vanc  29.5      14   0.001   14.4   2.6   28   54-82      7-36  (401)
227 d2pl1a1 c.23.1.1 (A:1-119) Pho  29.3      12  0.0009   14.8   1.9   25  117-141    27-51  (119)
228 d1gkya_ c.37.1.1 (A:) Guanylat  29.3      14   0.001   14.3   2.5   36   45-83      3-39  (186)
229 d1c4oa2 c.37.1.19 (A:410-583)   29.0      14  0.0011   14.3   6.1   19  126-144    73-91  (174)
230 d2a35a1 c.2.1.2 (A:4-215) Hypo  28.9      15  0.0011   14.3   3.1   29   52-82      6-34  (212)
231 d2h1ia1 c.69.1.14 (A:1-202) Ca  28.9      15  0.0011   14.3   5.9   51  222-273   142-199 (202)
232 d1e6ua_ c.2.1.2 (A:) GDP-4-ket  28.8      15  0.0011   14.3   3.4   29   52-82      6-34  (315)
233 d1mvoa_ c.23.1.1 (A:) PhoP rec  28.4      12 0.00087   14.9   1.6   26  116-141    28-53  (121)
234 d1jb9a2 c.25.1.1 (A:163-316) F  28.2      10 0.00076   15.3   1.3   26   43-72      3-28  (154)
235 d1w6ua_ c.2.1.2 (A:) 2,4-dieno  28.2      15  0.0011   14.2   4.1   28   53-82     30-57  (294)
236 d1a8pa2 c.25.1.1 (A:101-258) F  28.1     7.5 0.00055   16.4   0.6   32   45-80      9-40  (158)
237 d1ak2a1 c.37.1.1 (A:14-146,A:1  27.8      12 0.00086   14.9   1.5   24   44-70      4-27  (190)
238 d1jf8a_ c.44.1.1 (A:) Arsenate  27.8      15  0.0011   14.2   3.0   34   44-84      5-38  (130)
239 d1qf9a_ c.37.1.1 (A:) UMP/CMP   27.8      12 0.00087   14.9   1.5   17   54-70     14-30  (194)
240 d1xjha_ g.81.1.1 (A:) HSP33, C  27.7      11 0.00082   15.1   1.4   42  230-272    20-61  (62)
241 d1a2oa1 c.23.1.1 (A:1-140) Met  27.7      10 0.00074   15.4   1.2   25  117-141    32-56  (140)
242 d1ltqa1 c.108.1.9 (A:153-301)   27.7      15  0.0011   14.2   3.2   22   60-81     38-59  (149)
243 d1x92a_ c.80.1.3 (A:) Phosphoh  27.6      15  0.0011   14.2   3.8   19  122-140   125-143 (194)
244 d1dbwa_ c.23.1.1 (A:) Transcri  27.6      15  0.0011   14.1   2.1   46  222-274    75-120 (123)
245 d1x74a1 c.123.1.1 (A:2-360) 2-  27.5      15  0.0011   14.1   2.5   32   43-82      6-37  (359)
246 d1e4va1 c.37.1.1 (A:1-121,A:15  27.4      12 0.00089   14.8   1.5   16   55-70      9-24  (179)
247 d1g8pa_ c.37.1.20 (A:) ATPase   27.1      12 0.00085   15.0   1.4   23   46-71     31-53  (333)
248 d1teva_ c.37.1.1 (A:) UMP/CMP   26.9      13 0.00092   14.7   1.5   16   55-70     10-25  (194)
249 d2fnaa2 c.37.1.20 (A:1-283) Ar  26.7      13 0.00098   14.5   1.7   18   54-71     37-54  (283)
250 d1u8za_ c.37.1.8 (A:) Ras-rela  26.6      16  0.0012   14.0   2.4   20   45-67      6-25  (168)
251 d1kewa_ c.2.1.2 (A:) dTDP-gluc  26.4      16  0.0012   14.0   4.0   29   52-82      4-32  (361)
252 d1znwa1 c.37.1.1 (A:20-201) Gu  26.0     9.9 0.00072   15.5   0.9   28   55-82     11-38  (182)
253 d1a04a2 c.23.1.1 (A:5-142) Nit  26.0     9.7 0.00071   15.5   0.8   22  120-141    34-55  (138)
254 d1kgsa2 c.23.1.1 (A:2-123) Pho  25.8      15  0.0011   14.1   1.8   25  117-141    28-52  (122)
255 d2f5va1 c.3.1.2 (A:43-354,A:55  25.7      13 0.00095   14.7   1.4   32   46-85      7-38  (379)
256 d1q3ta_ c.37.1.1 (A:) CMP kina  25.7      14   0.001   14.5   1.5   24   55-83     12-35  (223)
257 d1p8aa_ c.44.1.1 (A:) Tyrosine  25.6     5.1 0.00037   17.5  -0.6   36   41-83      4-39  (146)
258 d2g9na1 c.37.1.19 (A:21-238) I  25.6      17  0.0012   13.9   4.0   50   54-114    57-106 (218)
259 d1u7za_ c.72.3.1 (A:) Coenzyme  25.2      17  0.0012   13.9   4.1   32   45-81     22-53  (223)
260 d1akya1 c.37.1.1 (A:3-130,A:16  25.0      14   0.001   14.3   1.5   23   45-70      4-26  (180)
261 d1u1ia2 d.81.1.3 (A:228-332) M  24.8      17  0.0012   13.8   2.0   24   57-80      1-24  (105)
262 d2c0ha1 c.1.8.3 (A:18-367) end  24.5      17  0.0013   13.8   4.4   18   63-80     44-61  (350)
263 d1vkoa2 d.81.1.3 (A:315-428) M  24.5      17  0.0013   13.8   2.0   24   57-80      1-24  (114)
264 g1w2w.1 c.124.1.5 (A:,B:) Puta  24.2      13 0.00097   14.6   1.3   64  114-177   215-288 (402)
265 d1w25a1 c.23.1.1 (A:2-140) Res  24.1      15  0.0011   14.1   1.6   26  116-141    27-52  (139)
266 d2ak3a1 c.37.1.1 (A:0-124,A:16  24.0      12 0.00088   14.9   1.0   22   46-70      9-30  (189)
267 d1dg9a_ c.44.1.1 (A:) Tyrosine  24.0      18  0.0013   13.7   3.1   37   43-84      7-46  (157)
268 d1ulua_ c.2.1.2 (A:) Enoyl-ACP  24.0      18  0.0013   13.7   3.8   31   52-82     12-42  (256)
269 d1kv5a_ c.1.1.1 (A:) Triosepho  23.9     9.3 0.00067   15.7   0.4   11   47-57      6-16  (249)
270 d1g16a_ c.37.1.8 (A:) Rab-rela  23.7      16  0.0012   14.0   1.6   20   45-67      4-23  (166)
271 d2ngra_ c.37.1.8 (A:) CDC42 {H  23.5      17  0.0012   13.9   1.6   22   44-68      4-25  (191)
272 d1yp2a2 c.68.1.6 (A:10-316) Gl  23.5      18  0.0013   13.6   2.3   39   42-87     32-70  (307)
273 d1ny5a1 c.23.1.1 (A:1-137) Tra  23.4      16  0.0011   14.1   1.5   25  117-141    27-51  (137)
274 d1x3sa1 c.37.1.8 (A:2-178) Rab  23.2      17  0.0013   13.8   1.7   21   44-67      8-28  (177)
275 d1um8a_ c.37.1.20 (A:) ClpX {H  23.0      14  0.0011   14.3   1.2   22   49-70     68-92  (364)
276 d1ktba2 c.1.8.1 (A:1-293) Meli  22.9      18  0.0013   13.6   2.5   13  134-146    54-66  (293)
277 d1eq2a_ c.2.1.2 (A:) ADP-L-gly  22.9      19  0.0013   13.6   4.4   27   52-80      3-30  (307)
278 d1g41a_ c.37.1.20 (A:) HslU {H  22.7      19  0.0014   13.5   4.5   32   43-81     49-80  (443)
279 d1zy9a2 c.1.8.13 (A:178-525) A  22.3      19  0.0014   13.5   2.4   42   41-83     34-83  (348)
280 d1s2ma2 c.37.1.19 (A:252-422)   22.2      19  0.0014   13.5   6.0   21   60-80     42-62  (171)
281 d2f7sa1 c.37.1.8 (A:5-190) Rab  22.1      15  0.0011   14.2   1.2   20   44-66      6-25  (186)
282 d2pv7a2 c.2.1.6 (A:92-243) Pre  22.0      19  0.0014   13.4   3.1   27   54-82     15-41  (152)
283 d1umdb2 c.48.1.2 (B:188-324) B  22.0      19  0.0014   13.4   3.2   32   43-81     17-48  (137)
284 d1kdga1 c.3.1.2 (A:215-512,A:6  21.9      17  0.0013   13.8   1.5   22   63-84     14-35  (360)
285 d2fr1a1 c.2.1.2 (A:1657-1915)   21.8      19  0.0014   13.4   3.8   29   52-82     13-42  (259)
286 d1m7ba_ c.37.1.8 (A:) RhoE (RN  21.7      18  0.0013   13.7   1.5   23   43-68      2-24  (179)
287 d1m2ka_ c.31.1.5 (A:) AF1676,   21.2      20  0.0015   13.3   2.0   20   61-81     78-97  (249)
288 d1ky3a_ c.37.1.8 (A:) Rab-rela  21.2      20  0.0015   13.3   2.4   20   45-67      4-23  (175)
289 d1psza_ c.92.2.2 (A:) Pneumoco  21.2      20  0.0015   13.3   2.1   50  234-283   182-231 (286)
290 d1p1ja2 d.81.1.3 (A:323-437) M  21.1      20  0.0015   13.3   2.0   24   57-80      1-24  (115)
291 d1mb3a_ c.23.1.1 (A:) Cell div  21.0      19  0.0014   13.4   1.6   25  117-141    28-52  (123)
292 d1uaya_ c.2.1.2 (A:) Type II 3  20.9      20  0.0015   13.3   3.8   29   52-82      5-33  (241)
293 d1g7sa4 c.37.1.8 (A:1-227) Ini  20.9      20  0.0015   13.3   2.7   22   44-69      5-28  (227)
294 d1m3sa_ c.80.1.3 (A:) Hypothet  20.9      20  0.0015   13.3   4.7   20   61-80     50-69  (186)
295 d1jeoa_ c.80.1.3 (A:) Probable  20.9      20  0.0015   13.3   4.1   93   61-175    50-142 (177)
296 d1nkta1 a.162.1.1 (A:226-349)   20.7      20  0.0015   13.3   2.9   43  126-183    71-113 (124)
297 d1i24a_ c.2.1.2 (A:) Sulfolipi  20.5      21  0.0015   13.2   3.9   31   52-84      5-38  (393)
298 d1xvla1 c.92.2.2 (A:49-327) Mn  20.5      21  0.0015   13.2   3.0   51  234-284   172-222 (279)
299 d1ebda2 c.3.1.5 (A:155-271) Di  20.3      21  0.0015   13.2   4.0   36   41-84     20-55  (117)
300 d1azta2 c.37.1.8 (A:35-65,A:20  20.3      15  0.0011   14.1   0.9   22   42-66      5-26  (221)
301 d1vima_ c.80.1.3 (A:) Hypothet  20.3      21  0.0015   13.2   4.0   32   45-81     42-73  (192)
302 d1xpma2 c.95.1.2 (A:168-388) 3  20.3      21  0.0015   13.2   2.7   20  219-238   127-147 (221)
303 d1y1pa1 c.2.1.2 (A:2-343) Alde  20.2      21  0.0015   13.2   3.5   29   53-83     16-44  (342)
304 d1ys7a2 c.23.1.1 (A:7-127) Tra  20.2      21  0.0015   13.2   1.8   25  117-141    28-52  (121)
305 d1ydya1 c.1.18.3 (A:29-356) Gl  20.2      21  0.0015   13.2   1.7   47  107-158     2-49  (328)
306 d1vd6a1 c.1.18.3 (A:8-224) Put  20.2      21  0.0015   13.2   1.6   47  108-159     1-48  (217)
307 d2oi6a2 c.68.1.5 (A:4-251) N-a  20.0      21  0.0015   13.2   3.0   38   42-87     20-57  (248)

No 1  
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.71  E-value=0.00019  Score=48.95  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=71.8

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf             89889982300078887489999999985247315987604578777755871456788770421233220576346520
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSD  122 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~  122 (338)
                      |+||..|+-.-  |+|||.+...+.+.  ..|.+++||.--+|...     ++....  ...+++...+...|--+....
T Consensus         2 ~iPv~iitGFL--GaGKTTll~~lL~~--~~~~riaVI~Ne~g~~~-----iD~~~~--~~~~~~~~el~~gcicc~~~~   70 (222)
T d1nija1           2 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEVS-----VDDQLI--GDRATQIKTLTNGCICCSRSN   70 (222)
T ss_dssp             CEEEEEEEESS--SSSCHHHHHHHHHS--CCCCCEEEECSSCCSCC-----EEEEEE--CTTSCEEEEETTSCEEECTTS
T ss_pred             CCCEEEEEECC--CCCHHHHHHHHHHC--CCCCCEEEEEECCCCHH-----HHHHHH--CCCCCCEEEECCCCCEECCCH
T ss_conf             97889986488--89999999999856--78983799973664112-----233430--256652488438840000003


Q ss_pred             H-HHHHHHH-C-----CCCCCEEEE----------------CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCC
Q ss_conf             1-2256641-0-----245747997----------------183223441230699996184335665537613652100
Q gi|254780401|r  123 R-KIGVQML-L-----QEGVDIIIM----------------DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPL  179 (338)
Q Consensus       123 R-~~~~~~~-~-----~~~~diiIl----------------DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~  179 (338)
                      - ..+...+ .     ...+|.|+.                .|........-+--|+++|+.++...-.-.   ++   .
T Consensus        71 ~~~~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~---~~---~  144 (222)
T d1nija1          71 ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF---TI---A  144 (222)
T ss_dssp             CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHC---HH---H
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH---HH---H
T ss_conf             67777889999986046776536786224210468999988520144421113402133355444443346---78---9


Q ss_pred             HHHHHHHHHHHHCCCCH
Q ss_conf             25566514544204412
Q gi|254780401|r  180 SRQLSYVDAILYVGNKK  196 (338)
Q Consensus       180 ~~~l~rad~vi~~~~~~  196 (338)
                      ...+..||++++||.+.
T Consensus       145 ~~Qi~~AD~ivlNK~Dl  161 (222)
T d1nija1         145 QSQVGYADRILLTKTDV  161 (222)
T ss_dssp             HHHHHTCSEEEEECTTT
T ss_pred             HHHHHHCCCCCCCCCCC
T ss_conf             99998688302446455


No 2  
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=96.29  E-value=0.0027  Score=40.85  Aligned_cols=81  Identities=30%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             CCEE--EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHH---CCCCC
Q ss_conf             9889--982300078887489999999985247315987604578777755871456788770421233220---57634
Q gi|254780401|r   44 IPVI--CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLAR---RAVTI  118 (338)
Q Consensus        44 ~pVI--~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~---~~pv~  118 (338)
                      .|.|  -||-   =|+|||-++.-||.+++++|.+|++++=                ++..-.+-|.+....   .+|+.
T Consensus        11 ~p~vi~lvGp---tGvGKTTTiAKLA~~~~~~g~kV~lit~----------------Dt~R~ga~eQL~~~a~~l~v~~~   71 (211)
T d1j8yf2          11 IPYVIMLVGV---QGTGKATTAGKLAYFYKKKGFKVGLVGA----------------DVYRPAALEQLQQLGQQIGVPVY   71 (211)
T ss_dssp             SSEEEEEECS---CCC----HHHHHHHHHHHTTCCEEEEEC----------------CCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------ECCCCCHHHHHHHHCCCCCCCEE
T ss_conf             9989999899---9999899999999999977993699972----------------02355156789874014684223


Q ss_pred             CCCCHHHHH-------HHHCCCCCCEEEECCC
Q ss_conf             652012256-------6410245747997183
Q gi|254780401|r  119 VTSDRKIGV-------QMLLQEGVDIIIMDDG  143 (338)
Q Consensus       119 V~~~R~~~~-------~~~~~~~~diiIlDDG  143 (338)
                      +..+..+.+       ..+...+.|+|+.|=.
T Consensus        72 ~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTa  103 (211)
T d1j8yf2          72 GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTA  103 (211)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             02441024478999998740267736998537


No 3  
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=95.78  E-value=0.008  Score=37.47  Aligned_cols=41  Identities=24%  Similarity=0.536  Sum_probs=33.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             9889982300078887489999999985247315987604578
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +|||+|=-.  -|||||-++..|++.|.++|++++++-...++
T Consensus         2 ~Pvi~itG~--~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           2 IPLLAFAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CCEEEEECC--TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CCEEEEECC--CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             788999918--99989999999999999779768774146655


No 4  
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=95.68  E-value=0.0062  Score=38.27  Aligned_cols=39  Identities=21%  Similarity=0.139  Sum_probs=30.7

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             89982300078887489999999985247315987604578
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      ||.|.-  .-|||||-++..|++.|+++|++++++..-..+
T Consensus         3 ii~I~G--~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~   41 (165)
T d1xjca_           3 VWQVVG--YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   41 (165)
T ss_dssp             EEEEEC--CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             EEEEEE--CCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             999980--999989999999999998679837999831676


No 5  
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=95.52  E-value=0.008  Score=37.48  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH-HHHH--CCCCCCCCC
Q ss_conf             8998230007888748999999998524731598760457877775587145678877042123-3220--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL-LLAR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~-lla~--~~pv~V~~~  122 (338)
                      +.-||-   =|+|||-++.-||.+++++|.+|++++                .++..-.+=|-+ .+++  ..|+.+..+
T Consensus        12 i~lvGp---tGvGKTTTiAKLA~~~~~~g~kV~lit----------------~Dt~R~gA~eQL~~~a~~l~v~~~~~~~   72 (211)
T d2qy9a2          12 ILMVGV---NGVGKTTTIGKLARQFEQQGKSVMLAA----------------GDTFRAAAVEQLQVWGQRNNIPVIAQHT   72 (211)
T ss_dssp             EEEECC---TTSCHHHHHHHHHHHHHTTTCCEEEEC----------------CCTTCHHHHHHHHHHHHHTTCCEECCST
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE----------------CCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             999899---999989999999999997799479982----------------3213666120455543433886211356


Q ss_pred             HHHHHHHH-------CCCCCCEEEECCC
Q ss_conf             12256641-------0245747997183
Q gi|254780401|r  123 RKIGVQML-------LQEGVDIIIMDDG  143 (338)
Q Consensus       123 R~~~~~~~-------~~~~~diiIlDDG  143 (338)
                      ..+-...+       ...+.|+|+.|=.
T Consensus        73 ~~d~~~~l~~~~~~a~~~~~d~ilIDTa  100 (211)
T d2qy9a2          73 GADSASVIFDAIQAAKARNIDVLIADTA  100 (211)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             8779999999999998769988996568


No 6  
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=95.39  E-value=0.0091  Score=37.05  Aligned_cols=79  Identities=24%  Similarity=0.321  Sum_probs=47.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHH-HH--CCCCCCCCC
Q ss_conf             899823000788874899999999852473159876045787777558714567887704212332-20--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLL-AR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~ll-a~--~~pv~V~~~  122 (338)
                      +.-||   .=|+|||-++.-||.++.++|.+|++++=-                +.+-.+-|-+.. ++  ..|+.+..+
T Consensus        14 i~lvG---ptGvGKTTTiAKLAa~~~~~~~kV~lit~D----------------t~R~gA~eQL~~~a~~l~i~~~~~~~   74 (213)
T d1vmaa2          14 IMVVG---VNGTGKTTSCGKLAKMFVDEGKSVVLAAAD----------------TFRAAAIEQLKIWGERVGATVISHSE   74 (213)
T ss_dssp             EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------------TTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99989---999988999999999999779906999601----------------33420467888776432764103677


Q ss_pred             HHHHHH-------HHCCCCCCEEEECCC
Q ss_conf             122566-------410245747997183
Q gi|254780401|r  123 RKIGVQ-------MLLQEGVDIIIMDDG  143 (338)
Q Consensus       123 R~~~~~-------~~~~~~~diiIlDDG  143 (338)
                      ...-+.       .....+.|+|+.|=.
T Consensus        75 ~~d~~~~~~~~~~~~~~~~~d~ilIDTa  102 (213)
T d1vmaa2          75 GADPAAVAFDAVAHALARNKDVVIIDTA  102 (213)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             7768998788789998769998998245


No 7  
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=95.32  E-value=0.008  Score=37.46  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHH-HHH--CCCCCCCCC
Q ss_conf             89982300078887489999999985247315987604578777755871456788770421233-220--576346520
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLL-LAR--RAVTIVTSD  122 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~l-la~--~~pv~V~~~  122 (338)
                      +..||-   =|+|||-++.-||.+++++|.+|++++=-                +.+-.+=|.+- +++  .+|+++..+
T Consensus         9 i~lvGp---tGvGKTTTiaKLA~~~~~~g~kV~lit~D----------------t~R~gA~eQL~~~a~~l~i~~~~~~~   69 (207)
T d1okkd2           9 VLVVGV---NGVGKTTTIAKLGRYYQNLGKKVMFCAGD----------------TFRAAGGTQLSEWGKRLSIPVIQGPE   69 (207)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHHTTTCCEEEECCC----------------CSSTTHHHHHHHHHHHHTCCEECCCT
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEEEC----------------CCCCCCHHHHHHCCCCCCCEEEECCC
T ss_conf             999899---99988999999999999779907999813----------------66654026676405456823896167


Q ss_pred             HHHHHHH-------HCCCCCCEEEECCCC
Q ss_conf             1225664-------102457479971832
Q gi|254780401|r  123 RKIGVQM-------LLQEGVDIIIMDDGF  144 (338)
Q Consensus       123 R~~~~~~-------~~~~~~diiIlDDGf  144 (338)
                      .......       ....+.|+|+.|=.=
T Consensus        70 ~~d~~~~~~~~~~~~~~~~~d~ilIDTaG   98 (207)
T d1okkd2          70 GTDPAALAYDAVQAMKARGYDLLFVDTAG   98 (207)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             74278899998999998799999717522


No 8  
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=95.12  E-value=0.0071  Score=37.82  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=27.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             07888748999999998524731598760
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      =||+|||-++..||..|.++|++|.+++=
T Consensus        16 KGGVGKTTvaa~lA~~lA~~G~rVLlvD~   44 (296)
T d1ihua1          16 KGGVGKTSISCATAIRLAEQGKRVLLVST   44 (296)
T ss_dssp             STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             98674999999999999978997899957


No 9  
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=95.02  E-value=0.012  Score=36.22  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=26.3

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             0788874899999999852473159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ..|+|||-++.-||.+++++|++|++++
T Consensus        18 p~GvGKTTTiaKLA~~~~~~g~kV~lit   45 (207)
T d1ls1a2          18 LQGSGKTTTAAKLALYYKGKGRRPLLVA   45 (207)
T ss_dssp             CTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9999889999999999997799279995


No 10 
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=94.89  E-value=0.013  Score=36.02  Aligned_cols=36  Identities=28%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||+|-|.. ||+|||-++.-||..|.++|++|+++-
T Consensus         3 ~vIav~~~k-GGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           3 RIISIVSGK-GGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             EEEEEECSS-TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCC-CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             299998999-988199999999999996899899994


No 11 
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=94.44  E-value=0.019  Score=34.84  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8998230007888748999999998524731598760
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +|+|=+  =||+|||-++.-||..|.++|++|.++--
T Consensus         3 ~Iai~g--KGGvGKTT~a~nLA~~LA~~G~rVllID~   37 (269)
T d1cp2a_           3 QVAIYG--KGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEE--CTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             999989--98577999999999999968995899963


No 12 
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}
Probab=94.42  E-value=0.18  Score=27.84  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             HHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHH
Q ss_conf             99997404643388988998230007888748999999998524731598760457877775587145678877042123
Q gi|254780401|r   30 SSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPL  109 (338)
Q Consensus        30 ~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~  109 (338)
                      ..++-.++.+. -..+||.|    +|=-|||-++.++...|++.|+++|..+-.+..............     +.||.+
T Consensus        26 ~~~l~~lg~P~-~~lkvI~V----TGTNGKtST~~~i~~IL~~~G~kvG~~tSP~~~~~~e~~~~~~~~-----i~~~~~   95 (296)
T d2gc6a2          26 LTLLHALGNPQ-QQGRYIHV----TGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEP-----IPDAAL   95 (296)
T ss_dssp             HHHHHHTTCGG-GSSCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEE-----CCHHHH
T ss_pred             HHHHHHCCCCH-HHCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCC-----CCHHHH
T ss_conf             99999829906-53987999----565768999999999998659760355146423200100001368-----868999


Q ss_pred             HHH-------------HC---CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             322-------------05---7634652012256641024574799718322344
Q gi|254780401|r  110 LLA-------------RR---AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSAD  148 (338)
Q Consensus       110 lla-------------~~---~pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~  148 (338)
                      ...             ..   ......--...+..+..+..+|+.++..|+..+.
T Consensus        96 ~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g~g~~~  150 (296)
T d2gc6a2          96 VNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDT  150 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9999999887776776426777647999899999999875230566546777766


No 13 
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=94.29  E-value=0.14  Score=28.74  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             HHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHH
Q ss_conf             97404643388988998230007888748999999998524731598760457877775587145678877042123322
Q gi|254780401|r   33 LMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA  112 (338)
Q Consensus        33 ~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla  112 (338)
                      +..++.+ .-+.+||.|    +|=-|||-++.++...|+..|++++.++-+..-...+..+.....-+..+..+-.-.+.
T Consensus        33 l~~lg~P-~~~lkvI~V----TGTNGKTSt~~~i~~IL~~~g~~~g~~~s~~~~~~~e~~~~~~~~i~~~~l~~~~~~v~  107 (296)
T d1o5za2          33 LSKLGNP-HLEYKTIHI----GGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME  107 (296)
T ss_dssp             HHHTTCG-GGSSEEEEE----ECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHH
T ss_pred             HHHCCCC-HHHCCEEEE----EECCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCEECCCEEEHHHHHHHHHHHH
T ss_conf             9980992-664987999----70386899999999999975987543225654445543132374010599999999888


Q ss_pred             -----HCC-----CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf             -----057-----63465201225664102457479971832234
Q gi|254780401|r  113 -----RRA-----VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA  147 (338)
Q Consensus       113 -----~~~-----pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~  147 (338)
                           ...     +.....--..+.....+.++|+.|+..|+...
T Consensus       108 ~~~~~~~~~~~~~~t~~e~~t~~a~~~~~~~~~d~~i~e~~~~g~  152 (296)
T d1o5za2         108 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGR  152 (296)
T ss_dssp             HHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSST
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHCCC
T ss_conf             765432014678886378899999997542033101210121020


No 14 
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=94.27  E-value=0.014  Score=35.74  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=28.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             07888748999999998524731598760457
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      =||+|||-++..||..|.++|++|.++.---.
T Consensus        28 KGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          28 KGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             STTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99887899999999999978993899937999


No 15 
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=93.83  E-value=0.031  Score=33.25  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +|.| | -=||+|||-++.-||..|.++|++|.+|=
T Consensus         4 ~Iai-s-gKGGVGKTT~a~NLA~~LA~~G~rVLlID   37 (289)
T d2afhe1           4 QCAI-Y-GKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEE-E-ECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEE-E-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8999-8-99987799999999999997899789995


No 16 
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.05  E-value=0.013  Score=36.08  Aligned_cols=102  Identities=15%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCC------HHHHCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             7888748999999998524731598760457877775587145678------8770421233220576346520122566
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS------AYDVGDEPLLLARRAVTIVTSDRKIGVQ  128 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~------~~~vGDEp~lla~~~pv~V~~~R~~~~~  128 (338)
                      =|+|||=+.+..+....+.|++++++.         |..+-...|-      -...|.+..++...   .-.++|.+...
T Consensus       113 vGSGKT~Va~~a~~~~~~~g~q~~~m~---------Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~---~~~~~r~~~~~  180 (264)
T d1gm5a3         113 VGSGKTVVAQLAILDNYEAGFQTAFMV---------PTSILAIQHYRRTVESFSKFNIHVALLIGA---TTPSEKEKIKS  180 (264)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTSCEEEEC---------SCHHHHHHHHHHHHHHHTCSSCCEEECCSS---SCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE---------EHHHHHHHHHHHHHHHHHHCCCCCEEECCC---CCHHHHHHHHH
T ss_conf             355665999999999885135505874---------047665789999988620123121110110---13699999999


Q ss_pred             HHCCCCCCEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             4102457479971832-234412306999961843356655
Q gi|254780401|r  129 MLLQEGVDIIIMDDGF-HSADLQADFSLIVVNSHRGLGNGL  168 (338)
Q Consensus       129 ~~~~~~~diiIlDDGf-Qh~~l~rdl~Ivl~d~~~~~gn~~  168 (338)
                      .+..-.+++||---.+ |..--.+++.+|++|-+..||-.+
T Consensus       181 ~~~~g~~~iiIGThsl~~~~~~f~~LglviiDEqH~fgv~Q  221 (264)
T d1gm5a3         181 GLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQ  221 (264)
T ss_dssp             HHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC----
T ss_pred             HHHCCCCCEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHH
T ss_conf             99779979999653885489874556225632421002434


No 17 
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=92.69  E-value=0.037  Score=32.75  Aligned_cols=27  Identities=19%  Similarity=0.164  Sum_probs=25.3

Q ss_pred             EC-CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             07-8887489999999985247315987
Q gi|254780401|r   54 MG-GTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        54 vG-GtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      .| |.|||-++.-||..|.++|++|.++
T Consensus         9 t~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           9 TDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             9999429999999999999779939998


No 18 
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=92.55  E-value=0.041  Score=32.40  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC-------CC-CCHHH
Q ss_conf             07888748999999998524731598760457877775587145678877042123322057634-------65-20122
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI-------VT-SDRKI  125 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~-------V~-~~R~~  125 (338)
                      +=|+|||=+.+..+....+.|++++++.         |...-...+ ..    +---+....|+-       ++ +.|.+
T Consensus        84 dvGsGKT~V~~~a~~~~~~~g~qv~~l~---------Pt~~La~Q~-~~----~~~~~~~~~~~~v~~l~~~~~~~~~~~  149 (233)
T d2eyqa3          84 DVGFGKTEVAMRAAFLAVDNHKQVAVLV---------PTTLLAQQH-YD----NFRDRFANWPVRIEMISRFRSAKEQTQ  149 (233)
T ss_dssp             CCCTTTHHHHHHHHHHHHTTTCEEEEEC---------SSHHHHHHH-HH----HHHHHSTTTTCCEEEESTTSCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEC---------CHHHHHHHH-HH----HHHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf             8887728999999999997689569974---------688767999-99----999987247977976357653126999


Q ss_pred             HHHHHCCCCCCEEEECC-CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             56641024574799718-32234412306999961843356655
Q gi|254780401|r  126 GVQMLLQEGVDIIIMDD-GFHSADLQADFSLIVVNSHRGLGNGL  168 (338)
Q Consensus       126 ~~~~~~~~~~diiIlDD-GfQh~~l~rdl~Ivl~d~~~~~gn~~  168 (338)
                      ....+.+..+++||=-- .+|..--.+++-++++|-+..||-.+
T Consensus       150 ~~~~~~~g~~~iviGths~l~~~~~f~~LgLiIiDEeH~fg~kQ  193 (233)
T d2eyqa3         150 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH  193 (233)
T ss_dssp             HHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHH
T ss_pred             HHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCEEEECHHHHHHHH
T ss_conf             99999679978897420233067765554630222312332578


No 19 
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=92.45  E-value=0.042  Score=32.37  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||+|-|. -||.|||-++.-||..|.++|++|+++-
T Consensus         2 kvIav~s~-KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASG-KGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEES-SSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             79999799-9998099999999999996899899995


No 20 
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=91.52  E-value=0.11  Score=29.41  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8988998230007888748999999998524731598760
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +.|||+|.--  -|+|||-++..|.+.|...|.++++|+=
T Consensus         3 k~pIIgIaG~--SGSGKTTva~~l~~i~~~~~v~~~iI~~   40 (288)
T d1a7ja_           3 KHPIISVTGS--SGAGTSTVKHTFDQIFRREGVKAVSIEG   40 (288)
T ss_dssp             TSCEEEEESC--C---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CCCEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             8889999899--9780999999999997156997699947


No 21 
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=91.19  E-value=0.16  Score=28.28  Aligned_cols=133  Identities=15%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC-CC-CC--
Q ss_conf             898899823000788874899999999852473159876045787777558714567887704212332205-76-34--
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR-AV-TI--  118 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~-~p-v~--  118 (338)
                      ..++|.  =-=..|+|||-++..|++.+.+.|++++|+.--=-+...+          -.-.||--.|.... .+ ++  
T Consensus        50 ~~~~ig--itG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~g----------g~llgdr~rm~~~~~~~~~~ir  117 (323)
T d2qm8a1          50 RAIRVG--ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG----------GSILGDKTRMARLAIDRNAFIR  117 (323)
T ss_dssp             CSEEEE--EECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC----------CCSSCCGGGSTTGGGCTTEEEE
T ss_pred             CCEEEE--EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH----------HCCCCCHHHHHHHHCCCCEEEC
T ss_conf             815986--1179988899999999998763687513443465547877----------5064101337887503440112


Q ss_pred             ----------CCCCHHHHHHHHCCCCCCEEEECCC--CCCC---CCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHH
Q ss_conf             ----------6520122566410245747997183--2234---412306999961843356655376136521002556
Q gi|254780401|r  119 ----------VTSDRKIGVQMLLQEGVDIIIMDDG--FHSA---DLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQL  183 (338)
Q Consensus       119 ----------V~~~R~~~~~~~~~~~~diiIlDDG--fQh~---~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l  183 (338)
                                ++..-..++..+...++|+|+..-.  -|..   ...-|..+++....  .|.  =+++    +- ..-+
T Consensus       118 ~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~--~GD--~iQ~----~k-~gil  188 (323)
T d2qm8a1         118 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGD--ELQG----IK-KGIF  188 (323)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------------CC-TTHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECC--CHH--HHHH----HH-HHHH
T ss_conf             6653453311067789999764148998589863233321466533665489986143--245--5656----32-3476


Q ss_pred             HHHHHHHHCCCCH
Q ss_conf             6514544204412
Q gi|254780401|r  184 SYVDAILYVGNKK  196 (338)
Q Consensus       184 ~rad~vi~~~~~~  196 (338)
                      ..||++++||.+.
T Consensus       189 E~aDi~vvNKaD~  201 (323)
T d2qm8a1         189 ELADMIAVNKADD  201 (323)
T ss_dssp             HHCSEEEEECCST
T ss_pred             HHHHEEEEECCCC
T ss_conf             5402046754245


No 22 
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=90.64  E-value=0.19  Score=27.72  Aligned_cols=134  Identities=14%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC--CCCC--
Q ss_conf             898899823000788874899999999852473159876045787777558714567887704212332205--7634--
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR--AVTI--  118 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~--~pv~--  118 (338)
                      ..++|+|  .=..|+|||-++..|++.+.+.|.+++|+.=.=.+..          +...-.||.-.|-...  ..++  
T Consensus        53 ~~~~Igi--tG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~----------~ggailgdr~rm~~~~~~~~~~ir  120 (327)
T d2p67a1          53 NTLRLGV--TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV----------TGGSILGDKTRMNDLARAEAAFIR  120 (327)
T ss_dssp             CSEEEEE--EECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------------------CTTTTCTTEEEE
T ss_pred             CCEEEEE--ECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEE----------ECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf             8328974--3899998999999999999756983322037776100----------065155413678874056541015


Q ss_pred             ----------CCCCHHHHHHHHCCCCCCEEEECC---CCCCCCC--CCEEEEEEECCCCCCCCC-CCCCCHHHHHCCHHH
Q ss_conf             ----------652012256641024574799718---3223441--230699996184335665-537613652100255
Q gi|254780401|r  119 ----------VTSDRKIGVQMLLQEGVDIIIMDD---GFHSADL--QADFSLIVVNSHRGLGNG-LVFPAGPLRVPLSRQ  182 (338)
Q Consensus       119 ----------V~~~R~~~~~~~~~~~~diiIlDD---GfQh~~l--~rdl~Ivl~d~~~~~gn~-~llPaGpLREp~~~~  182 (338)
                                ++..=..++..+...+.|+|+..-   |-.-..+  .-|.-+++++..  .|.. +.+=+|-        
T Consensus       121 ~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~--~Gd~iq~~k~gi--------  190 (327)
T d2p67a1         121 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAG--GGDDLQGIKKGL--------  190 (327)
T ss_dssp             EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC--------CCCCHHH--------
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCC--CCHHHHHHCHHH--------
T ss_conf             6555344442033205789998864998278750321121023440354389973688--725555422014--------


Q ss_pred             HHHHHHHHHCCCCHHH
Q ss_conf             6651454420441245
Q gi|254780401|r  183 LSYVDAILYVGNKKNV  198 (338)
Q Consensus       183 l~rad~vi~~~~~~~~  198 (338)
                      +..||++++||.+...
T Consensus       191 ~e~aDi~VvNKaD~~~  206 (327)
T d2p67a1         191 MEVADLIVINKDDGDN  206 (327)
T ss_dssp             HHHCSEEEECCCCTTC
T ss_pred             HCCCCEEEEEEECCCC
T ss_conf             2015579998622554


No 23 
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=90.09  E-value=0.054  Score=31.56  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=26.7

Q ss_pred             EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             9982300078887489999999985247315987604578
Q gi|254780401|r   47 ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        47 I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+|-+   |+|||-++..|.+++. .+.++++|.-.-+.
T Consensus         4 ~v~G~~---GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~   39 (244)
T d1yrba1           4 VFVGTA---GSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEECST---TSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred             EEECCC---CCCHHHHHHHHHHHHH-HCCEEEEEECCCCC
T ss_conf             999189---9839999999999884-38768999667664


No 24 
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=88.90  E-value=0.43  Score=25.19  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC--C--C----CCC-CHH
Q ss_conf             078887489999999985247315987604578777755871456788770421233220576--3--4----652-012
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV--T--I----VTS-DRK  124 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p--v--~----V~~-~R~  124 (338)
                      -=|+|||=+.+..+..+..+|.++.++.              +...-+.+.-++---+.+...  +  .    .+. .+.
T Consensus        66 pTGsGKT~~~~~~~~~~~~~~~rvliv~--------------Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  131 (237)
T d1gkub1          66 PTGVGKTSFGLAMSLFLALKGKRCYVIF--------------PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKR  131 (237)
T ss_dssp             CBTSCSHHHHHHHHHHHHTTSCCEEEEE--------------SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSH
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCEEEEEE--------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHH
T ss_conf             6897699999999999987458389994--------------44999999999999999984994699985542254123


Q ss_pred             HHHHHHC-CCCCCEEEECCC--CCCCCCCCEEEEEEECCCC
Q ss_conf             2566410-245747997183--2234412306999961843
Q gi|254780401|r  125 IGVQMLL-QEGVDIIIMDDG--FHSADLQADFSLIVVNSHR  162 (338)
Q Consensus       125 ~~~~~~~-~~~~diiIlDDG--fQh~~l~rdl~Ivl~d~~~  162 (338)
                      .....+. ..+++++|.--+  .++....++++.|++|--+
T Consensus       132 ~~~~~l~~~~~~~Ilv~Tp~~l~~~~~~~~~~~~vVvDE~d  172 (237)
T d1gkub1         132 EKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVD  172 (237)
T ss_dssp             HHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHH
T ss_pred             HHHHHHCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEECHH
T ss_conf             56555403444423226869999754434778889999926


No 25 
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=88.78  E-value=0.23  Score=27.07  Aligned_cols=30  Identities=20%  Similarity=0.130  Sum_probs=25.7

Q ss_pred             ECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             823000788874899999999852473159876
Q gi|254780401|r   49 VGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        49 VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -||+   |+|||-++..|++.|.++|+++.++.
T Consensus         6 eG~d---GsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           6 EGVD---GAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             ECST---TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8998---78999999999999987899789986


No 26 
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=88.25  E-value=0.21  Score=27.44  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=28.5

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             078887489999999985247315987604578
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      .-|+|||-.+..|++.|.+.|++..+++|.-++
T Consensus        10 ~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_          10 LEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             988879999999999999679973998329899


No 27 
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=88.12  E-value=0.35  Score=25.85  Aligned_cols=36  Identities=17%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+.|||.|    +|=.|||-++.+|+..|++.|+.+++.+
T Consensus         9 ~~~~vI~V----TGT~GKTTt~~~l~~iL~~~g~~~~~~~   44 (204)
T d2jfga3           9 AQAPIVAI----TGSNGKSTVTTLVGEMAKAAGVNVGVGG   44 (204)
T ss_dssp             CCSCEEEE----ECSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             89999999----8999799999999999996599822387


No 28 
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=87.79  E-value=0.14  Score=28.67  Aligned_cols=29  Identities=17%  Similarity=0.251  Sum_probs=25.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             78887489999999985247315987604
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      =|+|||.++..|++.|...++++.+++.|
T Consensus        10 ~GsGKsT~~~~L~~~l~~~~~~~~~~~~~   38 (190)
T d1khta_          10 PGVGSTTSSQLAMDNLRKEGVNYKMVSFG   38 (190)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99898999999999998769986999568


No 29 
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.14  E-value=0.18  Score=27.90  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=25.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .|||||-++..+++.|++.|.+++++..
T Consensus        10 ~GtGKTtl~~~i~~~l~~~~~~v~~~~~   37 (189)
T d2i3ba1          10 PGVGKTTLIHKASEVLKSSGVPVDGFYT   37 (189)
T ss_dssp             CSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             9971999999999999977997999984


No 30 
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=84.29  E-value=0.3  Score=26.30  Aligned_cols=28  Identities=14%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             8887489999999985247315987604
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+|||..+..|++.|..+|+.+-.++-|
T Consensus        11 GsGKTT~~~~La~~L~~~~~~~~~~~~~   38 (194)
T d1nksa_          11 GVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             TSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9898999999999998769988999789


No 31 
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=83.34  E-value=0.35  Score=25.81  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=29.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89982300078887489999999985247315987604
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+.||   .-|+|||-++-.|++.+...|+++.++++.
T Consensus         5 i~l~G---lpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           5 IVMVG---LPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             EEEEC---CTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf             99989---999999999999999997469997397453


No 32 
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.30  E-value=0.43  Score=25.19  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             7888748999999998524731598760457
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      -|+|||-.+..|++.|.++|+++..+ |..+
T Consensus        12 dGsGKsT~~~~L~~~L~~~g~~v~~~-~~p~   41 (209)
T d1nn5a_          12 DRAGKSTQSRKLVEALCAAGHRAELL-RFPE   41 (209)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCCEEEE-ESSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEE-ECCC
T ss_conf             88899999999999998779968999-6899


No 33 
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.58  E-value=1.5  Score=21.30  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC---CCCEEEEE--ECCCCCCCCCEEEEC
Q ss_conf             9999999999997404643388988998230007888748999999998524---73159876--045787777558714
Q gi|254780401|r   22 ISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK---NLKPGFLS--RGYGRKSRISFRVDL   96 (338)
Q Consensus        22 ls~iy~~~~~~~~~~~~~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~---g~~~~ils--RGYg~~~~~~~~v~~   96 (338)
                      ++++.-++....-.+.+. .-+.| +.||=-=.=|+|||-++.+|.+.|.++   +..++++|  =-|.....       
T Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~P-~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~-------   75 (286)
T d1odfa_           5 LDYTIEFLDKYIPEWFET-GNKCP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHED-------   75 (286)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TCCSC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH-------
T ss_conf             577999999999999704-89998-899837998788999999999999987277860676356777788899-------


Q ss_pred             CCCCHHHHCCHHHHHHHCCCCC
Q ss_conf             5678877042123322057634
Q gi|254780401|r   97 EKHSAYDVGDEPLLLARRAVTI  118 (338)
Q Consensus        97 ~~~~~~~vGDEp~lla~~~pv~  118 (338)
                      ...-+....+.|++.-+-.|--
T Consensus        76 r~~L~~~~~~~pl~~~RG~PgT   97 (286)
T d1odfa_          76 QLKLNEQFKNNKLLQGRGLPGT   97 (286)
T ss_dssp             HHHHHHHTTTCGGGSSSCSTTS
T ss_pred             HHHHHHHCCCCCCCEECCCCCC
T ss_conf             9998521355531100478740


No 34 
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=79.66  E-value=0.72  Score=23.58  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=26.6

Q ss_pred             EECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             00788-8748999999998524731598760457
Q gi|254780401|r   53 VMGGT-GKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        53 tvGGt-GKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      ++||| |-.--++.|++.|+++|+.|.+++.++|
T Consensus         6 ~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~~   39 (351)
T d1f0ka_           6 MAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR   39 (351)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTS
T ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             8388589899999999999858998999995883


No 35 
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=77.44  E-value=2.2  Score=20.17  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=26.9

Q ss_pred             CCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHH
Q ss_conf             23000----788874899999999852473159876045787777558714567887
Q gi|254780401|r   50 GGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAY  102 (338)
Q Consensus        50 GNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~  102 (338)
                      |++++    +|+|||-+++.+|-.+.. |...    -|+.....+++...+...+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia~-g~~~----~~~~~~~~~~vl~~~~E~~~~   80 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIAG-GPDL----LEVGELPTGPVIYLPAEDPPT   80 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHT-CCCT----TCCCCCCCCCEEEEESSSCHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHC-CCCC----CCCCCCCCCCEEEEECCCHHH
T ss_conf             958999928999899999999999976-9972----111235787368985123499


No 36 
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=75.90  E-value=1  Score=22.48  Aligned_cols=41  Identities=12%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CCCCCE-EEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             388988-9982300078887489999999985247315987604
Q gi|254780401|r   41 HAPIPV-ICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        41 ~~~~pV-I~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +..-|+ |.|+-  ..|+|||-++-.|++.|...+..+.+++.-
T Consensus        18 ~~~~~~iIgI~G--~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_          18 KTAGRLVLGIDG--LSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             CCSSSEEEEEEE--CTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCCCEEEEEEC--CCCCCHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf             679988999789--887899999999999836346652001220


No 37 
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=75.53  E-value=1.4  Score=21.46  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHH-HCC---CCEEEEEECCCC
Q ss_conf             89889982300078887489999999985-247---315987604578
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVI-DKN---LKPGFLSRGYGR   86 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g---~~~~ilsRGYg~   86 (338)
                      .-|++.+|-   =|||||-+.+.-+.+|. +.+   -++.+||  |.+
T Consensus        24 ~~~~lV~A~---AGSGKT~~lv~ri~~ll~~~~~~p~~Il~lt--ft~   66 (623)
T g1qhh.1          24 EGPLLIMAG---AGSGKTRVLTHRIAYLMAEKHVAPWNILAIT--FTN   66 (623)
T ss_dssp             SSCEEEEEC---TTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE--SSH
T ss_pred             CCCEEEEEE---CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--CCH
T ss_conf             999899981---8658999999999999980998933099994--419


No 38 
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}
Probab=75.08  E-value=1.4  Score=21.50  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |..=||+   |+|||-++..|++.|..+|.++.++-
T Consensus         8 I~IEG~i---GsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           8 IYLDGAY---GIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEESS---SSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9998887---78899999999998734688569971


No 39 
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=74.97  E-value=2.5  Score=19.73  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=30.4

Q ss_pred             CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEE-CC
Q ss_conf             43388988998230007888748999999998524--731598760-45
Q gi|254780401|r   39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK--NLKPGFLSR-GY   84 (338)
Q Consensus        39 ~~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~--g~~~~ilsR-GY   84 (338)
                      ....+.| +.||=-=.-|+|||-++..|...|.+.  +.++.++|= ||
T Consensus        74 ~~~~k~P-~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          74 TNGQRIP-YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CC-CCCC-EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             4478998-89999689999876899999999730468996599952156


No 40 
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=74.94  E-value=0.99  Score=22.60  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=29.1

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8899823000788874899999999852473159876045
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +||+    .+|=.|||-++.+|+..|++.|++++...-++
T Consensus        13 ~~I~----ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~   48 (215)
T d1p3da3          13 HGIA----VAGTHGKTTTTAMISMIYTQAKLDPTFVNGGL   48 (215)
T ss_dssp             EEEE----EESSSCHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred             CEEE----EECCCCHHHHHHHHHHHHHHCCCCCEEEECCE
T ss_conf             7899----98999889999999999986799965854863


No 41 
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=74.25  E-value=1  Score=22.48  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             8988998230007888748999999998524731598
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      |..||+|    +|=-|||-++-+|+..|++.|++++.
T Consensus         1 p~kvI~V----TGTnGKTTt~~mi~~iL~~~g~~~~~   33 (214)
T d1gg4a4           1 PARVVAL----TGSSGKTSVKEMTAAILSQCGNTLYT   33 (214)
T ss_dssp             CCEEEEE----ECSSCHHHHHHHHHHHHTTTSCEEEC
T ss_pred             CCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999----68986999999999999817998999


No 42 
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=73.68  E-value=2.2  Score=20.19  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             898899823000788874899999999852473159876045
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +..+|.|    +|=-|||-++.+|+..|++.|++|+...-|.
T Consensus        13 ~~~~iAI----TGTnGKTTt~~~l~~iL~~~g~~~~~~~g~~   50 (207)
T d1j6ua3          13 KKEEFAV----TGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI   50 (207)
T ss_dssp             CCCEEEE----ECSSSHHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCCEEEE----ECCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             9988999----8898899999999999985899976997876


No 43 
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}
Probab=73.68  E-value=1.5  Score=21.30  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=29.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+||+|    +|=-|||-++.+|+..|++.|++++.++
T Consensus         5 ~~vI~I----TGT~GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           5 LRLVGV----TGTNGKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             SEEEEE----ESSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             829999----8999399999999999997799869977


No 44 
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=73.07  E-value=1.3  Score=21.66  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=25.2

Q ss_pred             CCEEE----CCCCCCHHHHHHHHHH-HHCCCCEEEEE
Q ss_conf             23000----7888748999999998-52473159876
Q gi|254780401|r   50 GGFVM----GGTGKTPTALAIAKAV-IDKNLKPGFLS   81 (338)
Q Consensus        50 GNitv----GGtGKTP~v~~l~~~l-~~~g~~~~ils   81 (338)
                      |.+++    -|+|||-++..++-.+ ...|.+|+++|
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8089999479997999999999726553366345764


No 45 
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=72.15  E-value=1.9  Score=20.53  Aligned_cols=35  Identities=26%  Similarity=0.111  Sum_probs=24.6

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             88988998230007888748999999998524731598
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      .+-.++-.|-   -|||||-++.++++.+.+.+.-..+
T Consensus        42 ~~~~lll~Gp---pGtGKT~l~~~l~~~l~~~~~~~~~   76 (276)
T d1fnna2          42 HYPRATLLGR---PGTGKTVTLRKLWELYKDKTTARFV   76 (276)
T ss_dssp             SCCEEEEECC---TTSSHHHHHHHHHHHHTTSCCCEEE
T ss_pred             CCCCEEEECC---CCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             8881688898---9998999999999997544688578


No 46 
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}
Probab=71.55  E-value=2.8  Score=19.38  Aligned_cols=44  Identities=5%  Similarity=-0.196  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCCCCCC-CHHHHH-HHHHHHHHCCCEEEECHHHHHHC
Q ss_conf             000012214332348-989999-99997564798799854663438
Q gi|254780401|r  246 ALIEQCYSFGDHAHL-SDKKIA-YLLDQAQQKGLILVTTAKDAMRL  289 (338)
Q Consensus       246 ~~i~~~~~fpDHh~y-s~~dl~-~i~~~a~~~~~~iiTTEKD~VKL  289 (338)
                      +.++..+.||.-+.. +...+. .+.+.+...+..+..||.++..-
T Consensus       206 ~D~ig~~~Y~~~~~~~~~~~~~~~~~~~~~~~g~~v~i~E~~~~~~  251 (332)
T d1hjsa_         206 FDMMGVSFYPFYSSSATLSALKSSLDNMAKTWNKEIAVVETNWPIS  251 (332)
T ss_dssp             CCEEEEECCSSSCTTCCHHHHHHHHHHHHHHHCCEEEEEECCCCSB
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             2357443168788777777899999999998388559998424446


No 47 
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=71.48  E-value=2.6  Score=19.66  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=17.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7888748999999998524731
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      -|+|||=++..||+.|-..+.+
T Consensus        62 ~G~GKt~lak~la~~l~~~~~~   83 (315)
T d1qvra3          62 TGVGKTELAKTLAATLFDTEEA   83 (315)
T ss_dssp             SSSSHHHHHHHHHHHHHSSGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCCC
T ss_conf             8624899999999983588753


No 48 
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=71.06  E-value=1.6  Score=21.12  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98899823000788874899999999852473159876
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|++-.|.   -|||||=+..++++.+.++++.+..++
T Consensus        37 n~l~l~G~---~G~GKTHLl~A~~~~~~~~~~~~~~~~   71 (213)
T d1l8qa2          37 NPIFIYGS---VGTGKTHLLQAAGNEAKKRGYRVIYSS   71 (213)
T ss_dssp             SSEEEECS---SSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             85799888---998399999999987446765048844


No 49 
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=70.71  E-value=3.1  Score=19.05  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=17.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             78887489999999985247
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g   74 (338)
                      =|+|||=.+++++..+.+.+
T Consensus        40 ~GlGKT~~~i~~~~~~~~~~   59 (230)
T d1z63a1          40 MGLGKTLQTIAVFSDAKKEN   59 (230)
T ss_dssp             TTSCHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCC
T ss_conf             99886999987355442123


No 50 
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}
Probab=70.62  E-value=1.1  Score=22.25  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=23.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             9889982300078887489999999985247315987604578777
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSR   89 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~   89 (338)
                      -|++    +..||||=||+...+-....+ +.+...+-  |+.++.
T Consensus         9 ~~~v----~IagGtGiaP~~s~~~~l~~~-~~~~~~l~--~~~r~~   47 (120)
T d2piaa2           9 KSFI----LVAGGIGITPMLSMARQLRAE-GLRSFRLY--YLTRDP   47 (120)
T ss_dssp             SEEE----EEEEGGGHHHHHHHHHHHHHH-CSSEEEEE--EEESCG
T ss_pred             CCEE----EEEECCCHHHHHHHHHHHHHH-CCCCEEEE--EEECCH
T ss_conf             8789----998360678899999999984-69984999--961778


No 51 
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=69.78  E-value=3.3  Score=18.92  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=25.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             0078887489999999985247315987604578
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |=-|-|||..++=+|=.-.-+|++|.++ +.-++
T Consensus         9 tG~GKGKTTAAlG~alRA~G~G~rV~iv-QFlKg   41 (157)
T d1g5ta_           9 TGNGKGKTTAAFGTAARAVGHGKNVGVV-QFIKG   41 (157)
T ss_dssp             ESSSSCHHHHHHHHHHHHHHTTCCEEEE-ESSCC
T ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEE-EEECC
T ss_conf             5799970899999999984189879999-98527


No 52 
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=69.44  E-value=1.2  Score=21.93  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=20.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             00078887489999999985247315987
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      +..||+|=||+...+ +.|.+.+.++-++
T Consensus        13 lIAgG~GitPl~sm~-~~l~~~~~~v~l~   40 (160)
T d1ep3b2          13 IIGGGIGVPPLYELA-KQLEKTGCQMTIL   40 (160)
T ss_dssp             EEEEGGGSHHHHHHH-HHHHHHTCEEEEE
T ss_pred             EEEEEEEHHHHHHHH-HHHHHCCCCEEEE
T ss_conf             997104499999999-9998645855899


No 53 
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=68.86  E-value=1.9  Score=20.62  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=24.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|+|||-++..++....+.|.++..+|
T Consensus        35 pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          35 TGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999999999999999987232441121


No 54 
>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=68.84  E-value=3.1  Score=19.12  Aligned_cols=47  Identities=21%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCC
Q ss_conf             889889982300078887489999999985247315987-60457877
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKS   88 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~   88 (338)
                      .++-|+|=||=..||+-.-+++..+++.|.++|+.+... .||+|+..
T Consensus        24 ~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~   71 (218)
T d2i3da1          24 APIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQ   71 (218)
T ss_dssp             CCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCC
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCC
T ss_conf             878999799867689677479999999987369059997157667876


No 55 
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}
Probab=68.68  E-value=2.2  Score=20.15  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=26.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      +.+||||..  =..+++.|.+.|++|.+++|.-..
T Consensus         7 LVtGatG~i--G~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           7 LLIGATGYI--GRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             EEESTTSTT--HHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             998998689--999999999788969999888754


No 56 
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=68.31  E-value=3  Score=19.13  Aligned_cols=29  Identities=24%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0078887489999999985247315987604
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .+||||  .+=..||+.|.+.|++|.+.+|-
T Consensus         5 vigGaG--~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           5 LLGGTG--NLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EETTTS--HHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEECCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             994883--99999999999879989999799


No 57 
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=68.02  E-value=1.5  Score=21.36  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHH-HCC---CCEEEEE
Q ss_conf             89889982300078887489999999985-247---3159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVI-DKN---LKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~-~~g---~~~~ils   81 (338)
                      +-|.+.+|-   -|||||-+.+..+.++. ..+   .++.++|
T Consensus        14 ~~~~lI~g~---aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          14 TGPCLVLAG---AGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             SSEEEECCC---TTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CCCEEEEEE---CCCCHHHHHHHHHHHHHHHCCCCHHHEEEEE
T ss_conf             999899962---8843899999999999995699955789996


No 58 
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=67.71  E-value=3.3  Score=18.88  Aligned_cols=31  Identities=19%  Similarity=-0.024  Sum_probs=25.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |++||||  -+-.+|++.|.++|+.|.+++|.=
T Consensus        12 LVTG~tG--fIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_          12 FVTGHTG--FKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9978887--799999999997799899997899


No 59 
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=67.34  E-value=3.6  Score=18.59  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8899823000788874899999999852473159876045
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      -.+|.||.     +.+||+..+++.+-.   ..-+.|.|-
T Consensus         3 lFvC~gN~-----~RS~mAea~~~~~~~---~~~v~SAG~   34 (124)
T d1y1la_           3 LFVCIHNT-----ARSVMAEALFNAMAK---SWKAESAGV   34 (124)
T ss_dssp             EEEESSCS-----SHHHHHHHHHHTTCS---SCCEEEEES
T ss_pred             EEECCCCC-----HHHHHHHHHHHHHCC---CCEEEEECC
T ss_conf             99949995-----598999999998254---231345122


No 60 
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical  kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=67.32  E-value=1.8  Score=20.73  Aligned_cols=19  Identities=26%  Similarity=0.333  Sum_probs=16.6

Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             7888748999999998524
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~   73 (338)
                      -|+|||-+...++..+...
T Consensus         9 ~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           9 PGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             TTSSHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHCCCCC
T ss_conf             9938999999998148888


No 61 
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=67.05  E-value=2.1  Score=20.35  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CCCCCCHHHH-HHHHHHHHCCCCEEEEE
Q ss_conf             7888748999-99999852473159876
Q gi|254780401|r   55 GGTGKTPTAL-AIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~-~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-.++ .+.+.+.+.+.++.++.
T Consensus        16 tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1          16 PGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9988559999999997531385156531


No 62 
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=66.61  E-value=3.8  Score=18.48  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             3388988998230007888748999999998524
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .....|++.|    .||||=||+.-.|-..+...
T Consensus         5 ~~~~~p~vli----agGtGItP~~s~l~~~~~~~   34 (141)
T d1tvca2           5 ERGMAPRYFV----AGGTGLAPVVSMVRQMQEWT   34 (141)
T ss_dssp             CCSSSCEEEE----EESSTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEE----ECCHHHHHHHHHHHHHHHCC
T ss_conf             7999848999----77440999999999999839


No 63 
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=65.80  E-value=1.8  Score=20.74  Aligned_cols=28  Identities=18%  Similarity=0.099  Sum_probs=21.9

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             0788874899999999852473159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .=|+|||-+...|++.|...++......
T Consensus        14 ~~GsGKTTia~~La~~L~~~~~~~~~~~   41 (183)
T d1m8pa3          14 YMNSGKDAIARALQVTLNQQGGRSVSLL   41 (183)
T ss_dssp             STTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             9999999999999999865079840321


No 64 
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=65.39  E-value=3  Score=19.18  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8988998230007888748999999998524
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ..|||+|    +||||=||+...+-..+...
T Consensus         6 d~plv~I----agGtGiaP~~s~l~~l~~~~   32 (143)
T d1gvha3           6 DTPVTLI----SAGVGQTPMLAMLDTLAKAG   32 (143)
T ss_dssp             TCCEEEE----EEGGGGHHHHHHHHHHHHHT
T ss_pred             CCCEEEE----ECHHHHHHHHHHHHHHHHCC
T ss_conf             9979999----81240999999999999819


No 65 
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=65.06  E-value=1.4  Score=21.63  Aligned_cols=20  Identities=35%  Similarity=0.293  Sum_probs=17.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             78887489999999985247
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g   74 (338)
                      =|||||-++.++++.|.+.+
T Consensus        55 pGtGKT~l~~~l~~~l~~~~   74 (287)
T d1w5sa2          55 VGIGKTTLAKFTVKRVSEAA   74 (287)
T ss_dssp             CSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHC
T ss_conf             99899999999999987541


No 66 
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}
Probab=64.92  E-value=4  Score=18.29  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=25.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +++||||-  +=..+++.|.++|++|.+++|.=
T Consensus         7 lVtGatG~--iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           7 AVVGATGR--QGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             EEESTTSH--HHHHHHHHHHHTTCCEEEEESCS
T ss_pred             EEECCCHH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             99898728--99999999996889699997784


No 67 
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=64.90  E-value=3.6  Score=18.59  Aligned_cols=28  Identities=32%  Similarity=0.245  Sum_probs=16.2

Q ss_pred             ECCCCCCHHHHHHHHH-HHHCCCCEEEEE
Q ss_conf             0788874899999999-852473159876
Q gi|254780401|r   54 MGGTGKTPTALAIAKA-VIDKNLKPGFLS   81 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~-l~~~g~~~~ils   81 (338)
                      --|+|||=+...++.. +.+.+.++.+++
T Consensus        31 pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          31 PTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             89972889999999999970698189973


No 68 
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=64.78  E-value=4.1  Score=18.24  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |.+||||-  +=.+|++.|.++|++|..+.|.-
T Consensus         4 LItG~tGf--iG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           4 LVTGITGQ--DGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             99788878--99999999997839899998999


No 69 
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=64.07  E-value=2.4  Score=19.86  Aligned_cols=31  Identities=32%  Similarity=0.310  Sum_probs=22.7

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .++-.|.   =|||||-++..+++.+   +...+++|
T Consensus        37 ~~L~~GP---pGtGKT~lA~~la~~~---~~~~~~~~   67 (238)
T d1in4a2          37 HVLLAGP---PGLGKTTLAHIIASEL---QTNIHVTS   67 (238)
T ss_dssp             CEEEESS---TTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             EEEEECC---CCCCHHHHHHHHHHCC---CCCCCCCC
T ss_conf             4898799---9973889999998503---88853325


No 70 
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=63.47  E-value=2.7  Score=19.54  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88988998230007888748999999998524
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .+-|+|+|    +||||=||+...|-..+...
T Consensus         4 ~~rplv~I----AgG~GItP~~s~l~~~~~~~   31 (133)
T d1krha2           4 VKRPVLML----AGGTGIAPFLSMLQVLEQKG   31 (133)
T ss_dssp             CSSCEEEE----EEGGGHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEE----ECCHHHHHHHHHHHHHHHCC
T ss_conf             89979999----94582999999999999849


No 71 
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=62.95  E-value=2.2  Score=20.15  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=16.6

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             8998230007888748999999998
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      |..+|   +||.|||-++..+++..
T Consensus        47 v~I~G---mgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          47 LFLHG---RAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEC---STTSSHHHHHHHHHHHC
T ss_pred             EEEEC---CCCCCHHHHHHHHHHHH
T ss_conf             99977---99788899999999855


No 72 
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=62.90  E-value=4.4  Score=18.01  Aligned_cols=69  Identities=19%  Similarity=0.151  Sum_probs=30.7

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCH----HHH-HHHCC-CCHHHH--HHHH---CCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             5210025566514544204412----457-76313-501112--2220---13211168638987415535789998874
Q gi|254780401|r  175 LRVPLSRQLSYVDAILYVGNKK----NVI-SSIKN-KSVYFA--KLKP---RLTFDLSGKKVLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       175 LREp~~~~l~rad~vi~~~~~~----~~~-~~~~~-~~i~~~--~~~~---~~~~~l~~k~v~afsGIa~P~~F~~~L~~  243 (338)
                      +++-+.++++++|++|+||...    +.. +.+.. ..+++.  ..+|   .....+.++.++.+  =|||-.-+-.+..
T Consensus        56 i~~~l~~~~~~~DivittGG~s~g~~D~~~~~l~~~G~i~~~~v~~~PG~p~~~~~~~~~~v~~L--PGnP~s~~~~~~~  133 (149)
T d2nqra3          56 LRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNSWFCGL--PGNPVSATLTFYQ  133 (149)
T ss_dssp             HHHHHHHHHHHCSEEEECSSSCSSSCSHHHHHHHHHSEEEEEEBSEESCCEEEEEECSSSEEEEC--CSSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCEECC--CCCHHHHHHHHHH
T ss_conf             99998740345588998078667814889999997598235030200377630110157711748--8876999999999


Q ss_pred             HC
Q ss_conf             01
Q gi|254780401|r  244 LG  245 (338)
Q Consensus       244 ~g  245 (338)
                      +-
T Consensus       134 ~v  135 (149)
T d2nqra3         134 LV  135 (149)
T ss_dssp             TH
T ss_pred             HH
T ss_conf             99


No 73 
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=62.53  E-value=2.9  Score=19.33  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             74899999999852473159876
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .||+++||+..|+++|+.|.|..
T Consensus        16 q~~~~lyl~~~Lk~kG~~v~Va~   38 (152)
T d1kjna_          16 QIPLAIYTSHKLKKKGFRVTVTA   38 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             34799999999875697169955


No 74 
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.37  E-value=4.5  Score=17.94  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-----CCCCCCHHHHHHH
Q ss_conf             78887489999999985247315987604578777755871456788770421233220576-----3465201225664
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-----TIVTSDRKIGVQM  129 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-----v~V~~~R~~~~~~  129 (338)
                      =|||||  ..|+.-.+.....+         ++......+.+....+.++-++...+.....     ...+.........
T Consensus        49 TGsGKT--layllP~l~~~~~~---------~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  117 (206)
T d1veca_          49 NGTGKS--GAYLIPLLERLDLK---------KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM  117 (206)
T ss_dssp             SSSTTH--HHHHHHHHHHCCTT---------SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH
T ss_pred             CCCCCC--CCCCCCHHHCCCCC---------CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             740011--21246413202102---------5675249984030166899999998751156764212367740888999


Q ss_pred             HCCCCCCEEEEC-----CCCCCCCC-CCEEEEEEECC
Q ss_conf             102457479971-----83223441-23069999618
Q gi|254780401|r  130 LLQEGVDIIIMD-----DGFHSADL-QADFSLIVVNS  160 (338)
Q Consensus       130 ~~~~~~diiIlD-----DGfQh~~l-~rdl~Ivl~d~  160 (338)
                      ..+.++|+||.-     |-+++..+ ..++..+++|-
T Consensus       118 ~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDE  154 (206)
T d1veca_         118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE  154 (206)
T ss_dssp             HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred             HHHHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf             8875167089479633112331100015540699841


No 75 
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=62.35  E-value=3  Score=19.18  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCCCCCEEEECCE-----E-EC--------------CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             43388988998230-----0-07--------------88874899999999852473159876
Q gi|254780401|r   39 RLHAPIPVICVGGF-----V-MG--------------GTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        39 ~~~~~~pVI~VGNi-----t-vG--------------GtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .....++.|+-|..     . .|              |+|||-+++.++...++.|..++.+.
T Consensus        27 ~~~~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          27 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             CCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             667778757169889999756799667358998057774789999999999870898799986


No 76 
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=61.87  E-value=2.5  Score=19.68  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=19.1

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             88998230007888748999999998
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      .|+.+|   +-|+|||-+...||+.|
T Consensus         2 ~I~liG---~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIG---FMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEEC---CTTSCHHHHHHHHHHHH
T ss_pred             CEEEEC---CCCCCHHHHHHHHHHHH
T ss_conf             399989---99998899999999983


No 77 
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}
Probab=61.77  E-value=4.3  Score=18.07  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||-.  =..|++.|.++|++|.+++|.-.
T Consensus         7 LVtGatG~i--G~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           7 LIVGGTGYI--GKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             EEESTTSTT--HHHHHHHHHHTTCCEEEECCSCC
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCCC
T ss_conf             998998789--99999999968797999989874


No 78 
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=61.67  E-value=1.5  Score=21.26  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             0078887489999999985247315987604578
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      .+||-|.  +|-.|++.|.++|.+|.|++-.|+.
T Consensus        15 ~~GGl~~--vv~~La~~L~~~Gh~V~Vi~P~y~~   46 (477)
T d1rzua_          15 KTGGLAD--VVGALPIALEAHGVRTRTLIPGYPA   46 (477)
T ss_dssp             CSSHHHH--HHHHHHHHHHTTTCEEEEEEECCHH
T ss_pred             CCCCHHH--HHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             2676899--9999999999769969999669853


No 79 
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=61.60  E-value=4.6  Score=17.85  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             HHHCCHHHHHHHHHHHHCCCCH----H----HHHHHCCCCHHHHHHHH---CCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             5210025566514544204412----4----57763135011122220---13211168638987415535789998874
Q gi|254780401|r  175 LRVPLSRQLSYVDAILYVGNKK----N----VISSIKNKSVYFAKLKP---RLTFDLSGKKVLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       175 LREp~~~~l~rad~vi~~~~~~----~----~~~~~~~~~i~~~~~~~---~~~~~l~~k~v~afsGIa~P~~F~~~L~~  243 (338)
                      +++-+.++++++|+||+||...    +    ..+.....-+.....+|   .....+.++.++.+  =|||...+-.+..
T Consensus        56 i~~~i~~~~~~~DliIttGG~s~g~~D~~~~~l~~~g~~~~~~v~i~PG~p~~~g~~~~~~v~~L--PG~P~s~~~~~~~  133 (148)
T d1uz5a3          56 LKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVFGL--PGYPTSCLTNFTL  133 (148)
T ss_dssp             HHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEETTEEEEEE--CSSHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCEEEEEC--CCCHHHHHHHHHH
T ss_conf             88999864134668998787555414679999998182250466887237425522598799987--8987999999999


Q ss_pred             HC
Q ss_conf             01
Q gi|254780401|r  244 LG  245 (338)
Q Consensus       244 ~g  245 (338)
                      +-
T Consensus       134 ~v  135 (148)
T d1uz5a3         134 LV  135 (148)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 80 
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=61.39  E-value=1.9  Score=20.58  Aligned_cols=29  Identities=14%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             78887489999999985247315987604
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      =|+|||-++..|++.|.+.....+++..|
T Consensus        33 sGsGKTTia~~L~~~l~~~~~~~~~~ldg   61 (208)
T d1m7ga_          33 SASGKSTLAVELEHQLVRDRRVHAYRLDG   61 (208)
T ss_dssp             TTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99998999999998877742750899753


No 81 
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=61.38  E-value=2.7  Score=19.54  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             89889982300078887489999999985247
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      .-|+|.    .+||||=||+.-.+-..+...+
T Consensus         5 ~~plvl----iagGtGIaP~~sil~~~~~~~~   32 (142)
T d1cqxa3           5 KTPIVL----ISGGVGLTPMVSMLKVALQAPP   32 (142)
T ss_dssp             CSCEEE----EESSCCHHHHHHHHHHHTCSSC
T ss_pred             CCCEEE----EECCEEHHHHHHHHHHHHHCCC
T ss_conf             997899----9865448999999999997699


No 82 
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=61.11  E-value=3  Score=19.20  Aligned_cols=18  Identities=44%  Similarity=0.578  Sum_probs=13.0

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             788874899999999852
Q gi|254780401|r   55 GGTGKTPTALAIAKAVID   72 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~   72 (338)
                      .|||||-++..+...+.+
T Consensus       172 pGTGKTt~i~~~l~~l~~  189 (359)
T d1w36d1         172 PGTGKTTTVAKLLAALIQ  189 (359)
T ss_dssp             TTSTHHHHHHHHHHHHHH
T ss_pred             CCCCCEEHHHHHHHHHHH
T ss_conf             988752169999999999


No 83 
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=60.85  E-value=1.6  Score=21.16  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             88988998230007888748999999998
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      ++-.|+.+|.-   |||||-++..|++.+
T Consensus         6 ~~K~I~i~G~~---GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGE---SSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCT---TSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCC---CCCHHHHHHHHHHHH
T ss_conf             63289998999---998999999999984


No 84 
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=60.43  E-value=2.9  Score=19.24  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=15.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||=+.   ...+.+.|.++.++.
T Consensus        17 TGsGKT~~~---~~~~~~~~~~vli~~   40 (136)
T d1a1va1          17 TGSGKSTKV---PAAYAAQGYKVLVLN   40 (136)
T ss_dssp             TTSCTTTHH---HHHHHTTTCCEEEEE
T ss_pred             CCCCHHHHH---HHHHHHCCCCEEEEC
T ss_conf             877999999---999998699399976


No 85 
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}
Probab=60.16  E-value=3.4  Score=18.77  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             CCEEEECCE--EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             988998230--007888748999999998524731598760
Q gi|254780401|r   44 IPVICVGGF--VMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        44 ~pVI~VGNi--tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -..|.|--+  |-=|-|||-+++-|++-|.+.|++..+-.|
T Consensus        51 gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~lR   91 (549)
T d1eg7a_          51 GKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLR   91 (549)
T ss_dssp             CEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCEEEEEE
T ss_conf             64999985789888898510288699999870984589972


No 86 
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.00  E-value=2.9  Score=19.33  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCC-----CCEEEEEE
Q ss_conf             78887489999999985247-----31598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKN-----LKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g-----~~~~ilsR   82 (338)
                      .|+|||-++-.|++.|...+     .++.+++-
T Consensus        11 ~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~   43 (213)
T d1uj2a_          11 TASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQ   43 (213)
T ss_dssp             TTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEG
T ss_pred             CCCCHHHHHHHHHHHHCHHCCCCCCCCEEEEEC
T ss_conf             978799999999999641013457884399934


No 87 
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=59.95  E-value=4.9  Score=17.66  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||||  -+=.+|++.|.++|++|..+.|.
T Consensus         5 LVTGatG--fiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           5 LITGITG--QDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9968864--89999999999784989999788


No 88 
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=59.57  E-value=5  Score=17.61  Aligned_cols=84  Identities=10%  Similarity=0.086  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCHHHHC-------CEEEEEEEEEECCHHHHHHHH
Q ss_conf             1221433234898999999997564798799854663438233344111220-------517887698957878999999
Q gi|254780401|r  250 QCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFA-------KSMVIEVDIVFENPDDLTNLV  322 (338)
Q Consensus       250 ~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEKD~VKL~~~~~~~~~l~~-------~~~~l~i~~~~~~~~~l~~~l  322 (338)
                      +++...+.+.++.-.++-+.......+..++.-..+ ..+-.+.......+.       ..-.+.++..+....+..++.
T Consensus       218 ~~i~iDE~QD~s~~q~~~~~~l~~~~~~~~~~gD~~-Q~I~~f~ga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~a  296 (318)
T d1pjra1         218 QYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDAD-QSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAA  296 (318)
T ss_dssp             SEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGG-GCCCGGGTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC-CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH
T ss_conf             111038777778999999999987615635631565-3101466678599999998689988997999999769999999


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999863134
Q gi|254780401|r  323 EMTVVSFANSNK  334 (338)
Q Consensus       323 ~~~i~~~~n~~~  334 (338)
                      .+.+....++..
T Consensus       297 n~ll~~~~~r~~  308 (318)
T d1pjra1         297 NEVIEHNVNRKP  308 (318)
T ss_dssp             HHHHTTCSSCCC
T ss_pred             HHHHHCCCCCCC
T ss_conf             999970722479


No 89 
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=58.72  E-value=3.4  Score=18.75  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCCCCCCEEEECCEE------EC--------------CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             6433889889982300------07--------------88874899999999852473159876
Q gi|254780401|r   38 QRLHAPIPVICVGGFV------MG--------------GTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        38 ~~~~~~~pVI~VGNit------vG--------------GtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .....++++|+-|...      .|              |||||-+++.++...++.|.+++.+.
T Consensus        29 ~~~~~~~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiD   92 (268)
T d1xp8a1          29 AESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID   92 (268)
T ss_dssp             SCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             7678877767478889999756798667547898058765227999999999970799899998


No 90 
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=58.07  E-value=3.4  Score=18.83  Aligned_cols=32  Identities=38%  Similarity=0.584  Sum_probs=22.6

Q ss_pred             CCEEEE-CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             988998-2300078887489999999985247315987604
Q gi|254780401|r   44 IPVICV-GGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        44 ~pVI~V-GNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .|||+| |=   =|+|||-.+..|++.|     ...-||=|
T Consensus         3 ~piI~I~Gp---pGSGKgT~ak~La~~~-----gl~~iStG   35 (225)
T d1ckea_           3 APVITIDGP---SGAGKGTLCKAMAEAL-----QWHLLDSG   35 (225)
T ss_dssp             SCEEEEECC---TTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHHH-----CCCEECHH
T ss_conf             988997799---9889899999999996-----99089888


No 91 
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}
Probab=57.99  E-value=5.3  Score=17.43  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=25.3

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3889889982300078887489999999985247315987
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ..+.|+|.|    .||||=||+.-.|-..+........++
T Consensus         4 d~~~plvlI----a~GtGIaP~~s~l~~~~~~~~~~~~~l   39 (153)
T d1ddga2           4 NPETPVIMI----GPGTGIAPFRAFMQQRAADEAPGKNWL   39 (153)
T ss_dssp             STTSCEEEE----CCGGGGHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCCCEEEE----ECCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999999999----875219999999999998368773488


No 92 
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.08  E-value=1.8  Score=20.72  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             88998230007888748999999998524731598760
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .++-.|.   =|||||-++..+|+.+   +..+..++-
T Consensus        54 ~lll~GP---pG~GKTt~a~~la~~~---~~~~~~~~~   85 (253)
T d1sxja2          54 AAMLYGP---PGIGKTTAAHLVAQEL---GYDILEQNA   85 (253)
T ss_dssp             EEEEECS---TTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHH---HHHHHCCCC
T ss_conf             4999879---9998889999999998---751201344


No 93 
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.91  E-value=5.5  Score=17.31  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |++||||  =+=-+|++.|.++|++|..+.|
T Consensus         5 LVTG~tG--fIG~~l~~~Ll~~g~~V~~i~r   33 (347)
T d1t2aa_           5 LITGITG--QDGSYLAEFLLEKGYEVHGIVR   33 (347)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9904776--8999999999978398999988


No 94 
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=56.64  E-value=3.9  Score=18.36  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             8988998230007888748999999998
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      |..|+..|.-   |+|||-.+..|++.+
T Consensus         3 Pm~I~i~Gpp---GsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAP---ASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEEST---TSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCC---CCCHHHHHHHHHHHH
T ss_conf             7299998899---999899999999987


No 95 
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=56.50  E-value=5.6  Score=17.26  Aligned_cols=74  Identities=14%  Similarity=0.043  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCC---C-CCCHHHHHHH-HCCC
Q ss_conf             748999999998524731598760457877775587145678877042123322057634---6-5201225664-1024
Q gi|254780401|r   59 KTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTI---V-TSDRKIGVQM-LLQE  133 (338)
Q Consensus        59 KTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~---V-~~~R~~~~~~-~~~~  133 (338)
                      --|+..||.+.+++.|..=+.+.||.-|-....     .-|     .+..+-++..-|++   | .++|.++... +.+.
T Consensus        18 g~pl~~~iv~~ar~~giaGaTv~rgi~GfG~~~-----~~h-----~~~~~~ls~dlPv~Ie~vd~~eki~~~l~~l~~~   87 (102)
T d1o51a_          18 GKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKR-----HMH-----RSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI   87 (102)
T ss_dssp             TEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-----------------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred             CEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCC-----CEE-----CCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             559999999999987998079993125437999-----674-----1522221799988999978899999999999987


Q ss_pred             -CCCEEEECC
Q ss_conf             -574799718
Q gi|254780401|r  134 -GVDIIIMDD  142 (338)
Q Consensus       134 -~~diiIlDD  142 (338)
                       .--+|++.|
T Consensus        88 ~~~glvt~e~   97 (102)
T d1o51a_          88 DFDGLVFTAD   97 (102)
T ss_dssp             CCCSEEEEEE
T ss_pred             CCCCEEEEEE
T ss_conf             4785699999


No 96 
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=56.34  E-value=4.7  Score=17.82  Aligned_cols=53  Identities=19%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             CCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEECH
Q ss_conf             86389874-15535789998874010000122143323489899999999756479-8799854
Q gi|254780401|r  222 GKKVLAFS-GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKG-LILVTTA  283 (338)
Q Consensus       222 ~k~v~afs-GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~-~~iiTTE  283 (338)
                      +.+++.|| ...+-+...+.|++.|..+...     |......+    ....++.. ..+++|.
T Consensus       178 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l-----~~~~~~~~----~~~~~~~~~~~lvaT~  232 (305)
T d2bmfa2         178 KGKTVWFVPSIKAGNDIAACLRKNGKKVIQL-----SRKTFDSE----YIKTRTNDWDFVVTTD  232 (305)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHHTCCCEEC-----CTTCHHHH----GGGGGTSCCSEEEECG
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCEEEE-----CCCCHHHH----HHHHHCCCHHHHHHHH
T ss_conf             7998999630999999999998679989995-----78384777----7543100011355567


No 97 
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=56.26  E-value=1.9  Score=20.56  Aligned_cols=26  Identities=23%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88998230007888748999999998524
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      -|.-.|.+   |+|||-+|..+++.|--.
T Consensus        35 ii~L~G~L---GaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          35 MVYLNGDL---GAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEEECST---TSSHHHHHHHHHHHTTCC
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHCCCC
T ss_conf             99996687---765889999987642234


No 98 
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.35  E-value=2.1  Score=20.21  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=18.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCC
Q ss_conf             788874899999999852473
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNL   75 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~   75 (338)
                      -|+|||-.+..|++.|++++.
T Consensus        12 DGsGKST~~~~L~~~L~~~~~   32 (214)
T d1tmka_          12 DRTGKTTQCNILYKKLQPNCK   32 (214)
T ss_dssp             TTSSHHHHHHHHHHHTTTSEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCE
T ss_conf             888699999999999971977


No 99 
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=55.10  E-value=5.3  Score=17.40  Aligned_cols=27  Identities=37%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             3388988998230007888748999999998
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      ...+.|+|.||    ||||=+|+--+|-+..
T Consensus         4 ~~~~~PiimIa----~GTGIAPf~s~l~~r~   30 (160)
T d1ja1a3           4 FKSTTPVIMVG----PGTGIAPFMGFIQERA   30 (160)
T ss_dssp             SSTTSCEEEEC----CGGGGHHHHHHHHHHH
T ss_pred             CCCCCCEEEEE----CCHHHHHHHHHHHHHH
T ss_conf             69999999997----6382999999999999


No 100
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=54.91  E-value=5  Score=17.60  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=9.8

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             86389874155357899988740
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQL  244 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~  244 (338)
                      |+.++.+.  |||-.-+-.++.+
T Consensus       110 g~~v~~LP--G~P~sa~~~~~~~  130 (144)
T d1wu2a3         110 GEKVFIMS--GYPVSVFAQFNLF  130 (144)
T ss_dssp             ETTEEECC--SSHHHHHHHHHHT
T ss_pred             CCEEECCC--CCHHHHHHHHHHH
T ss_conf             65633388--8839999999999


No 101
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.79  E-value=5.9  Score=17.08  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=25.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             0007888748999999998524731598760457
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +.+||||..  =..+++.|.++|+++.+++|--.
T Consensus         7 lV~GatG~i--G~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           7 AIFGATGQT--GLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             EEESTTSHH--HHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEECCCCHH--HHHHHHHHHHCCCEEEEEECCHH
T ss_conf             999998789--99999999978698999983716


No 102
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.58  E-value=1.8  Score=20.71  Aligned_cols=27  Identities=15%  Similarity=0.211  Sum_probs=20.7

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             982300078887489999999985247315
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      .=|+.   |+|||.++..|++.|.+.++..
T Consensus         7 iEG~~---GsGKST~~~~L~~~l~~~~i~~   33 (241)
T d2ocpa1           7 IEGNI---AVGKSTFVKLLTKTYPEWHVAT   33 (241)
T ss_dssp             EEECT---TSSHHHHHHHHHHHCTTSEEEC
T ss_pred             EECCC---CCCHHHHHHHHHHHHHHCCCCC
T ss_conf             98998---8859999999999873038700


No 103
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}
Probab=54.57  E-value=2  Score=20.38  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=26.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             9889982300078887489999999985247315987604
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |+||.||.=..|+        .+|..|.++|++|.+|=||
T Consensus         3 v~VIVVGsG~aG~--------v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAA--------VSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHH--------HHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHH--------HHHHHHHHCCCEEEEEECC
T ss_conf             7099967698999--------9999997795919999168


No 104
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=53.81  E-value=5.1  Score=17.56  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             0788874899999999852473159876045787
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      +||.|  -.+..|++.|.++|+.|.|++..|..-
T Consensus        15 ~GG~~--~~~~~La~~L~~~Gh~V~Vvtp~~~~~   46 (437)
T d2bisa1          15 VGGLA--EALTAISEALASLGHEVLVFTPSHGRF   46 (437)
T ss_dssp             SSSHH--HHHHHHHHHHHHTTCEEEEEEECTTSS
T ss_pred             CCCHH--HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             58799--999999999997699899990589865


No 105
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.65  E-value=2.6  Score=19.60  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CCCC-CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             3889-889982300078887489999999985247315987604
Q gi|254780401|r   41 HAPI-PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        41 ~~~~-pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .... ||=+|+|.+.|-+|.     +||+.+..+|+.|..+++-
T Consensus        31 pID~~pVR~ItN~SSGk~G~-----alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          31 PLEARPVRFLDNFSSGRRGA-----TSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             ESSSSCSEEEEECCCCHHHH-----HHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCCCEEECCCCCHHHHH-----HHHHHHHHCCCEEEEEECC
T ss_conf             34799962768779659999-----9999999869979999368


No 106
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=52.89  E-value=3.3  Score=18.93  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             38898899823000788874899999999852
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      ....|||.|    .||||=||+...|-..+..
T Consensus         4 d~~~~~llI----agGtGIaP~~s~l~~~~~~   31 (162)
T d2bmwa2           4 DPEANVIML----AGGTGITPMRTYLWRMFKD   31 (162)
T ss_dssp             CTTCEEEEE----EEGGGHHHHHHHHHHHHCH
T ss_pred             CCCCCEEEE----ECCEEHHHHHHHHHHHHHC
T ss_conf             989998999----7600199999999999972


No 107
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=52.69  E-value=4.3  Score=18.08  Aligned_cols=34  Identities=41%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|--++-.|.-   |||||-++.++|+.+   |.....++
T Consensus        44 ~~~~iLL~Gpp---GtGKT~la~~iA~~~---~~~~~~i~   77 (256)
T d1lv7a_          44 IPKGVLMVGPP---GTGKTLLAKAIAGEA---KVPFFTIS   77 (256)
T ss_dssp             CCCEEEEECCT---TSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred             CCCEEEEECCC---CCCCCHHHHHHHHHC---CCCEEEEE
T ss_conf             88867866899---888228999999982---99879988


No 108
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
Probab=52.59  E-value=6.4  Score=16.84  Aligned_cols=89  Identities=9%  Similarity=-0.029  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCCCCCEEEECCCCCHHHHCCHHH---HHHHC--CCC-CCCCCHHH--
Q ss_conf             78887489999999985247315987-60457877775587145678877042123---32205--763-46520122--
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKSRISFRVDLEKHSAYDVGDEPL---LLARR--AVT-IVTSDRKI--  125 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~~~~~~v~~~~~~~~~vGDEp~---lla~~--~pv-~V~~~R~~--  125 (338)
                      |.++-.-.-..++++|.++||.+... .||++|.+.+...-   .+....+-|=..   .+...  .++ ++|..---  
T Consensus        40 G~~~~~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~---~~~~~~~~dl~~vi~~l~~~~~~~i~lvG~SmGG~i  116 (302)
T d1thta_          40 GFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDE---FTMTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARV  116 (302)
T ss_dssp             TTCGGGGGGHHHHHHHHTTTCCEEEECCCBCC--------C---CCHHHHHHHHHHHHHHHHHTTCCCEEEEEETHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHH
T ss_conf             98442779999999999789989995678988788886567---878899989999997630357761689997568999


Q ss_pred             HHHHHCCCCCCEEEECCCCCC
Q ss_conf             566410245747997183223
Q gi|254780401|r  126 GVQMLLQEGVDIIIMDDGFHS  146 (338)
Q Consensus       126 ~~~~~~~~~~diiIlDDGfQh  146 (338)
                      +..++....+..+|++-|+-+
T Consensus       117 al~~A~~~~v~~li~~~g~~~  137 (302)
T d1thta_         117 AYEVISDLELSFLITAVGVVN  137 (302)
T ss_dssp             HHHHTTTSCCSEEEEESCCSC
T ss_pred             HHHHHCCCCCCEEEEECCCCC
T ss_conf             999824302223676324423


No 109
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}
Probab=52.58  E-value=6.4  Score=16.84  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=24.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788874899999999852473159876045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.+||||-  +=-+|++.|.++|+.+..++|-.
T Consensus         5 lItGasGf--iG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           5 LITGANGQ--LGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEESTTSH--HHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECHH
T ss_conf             99799988--99999999986889899920412


No 110
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.48  E-value=2.2  Score=20.09  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             788874899999999852473159876045
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      =|+|||-++..|++.|...+.....+..-+
T Consensus        28 pGSGKTTiAk~La~~l~~~~~~~~~~~~d~   57 (195)
T d1x6va3          28 SGAGKTTVSMALEEYLVCHGIPCYTLDGDN   57 (195)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf             999999999999999974479731000776


No 111
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.30  E-value=6.5  Score=16.81  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             889982300078887489999999985247
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      .++-.|   -.|||||-++..+++.+...+
T Consensus        35 ~lll~G---p~G~GKTt~~~~la~~l~~~~   61 (252)
T d1sxje2          35 HLLLYG---PNGTGKKTRCMALLESIFGPG   61 (252)
T ss_dssp             CEEEEC---STTSSHHHHHHTHHHHHSCTT
T ss_pred             EEEEEC---CCCCCHHHHHHHHHHHHCCCC
T ss_conf             599889---999988999999997622764


No 112
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.15  E-value=6.2  Score=16.95  Aligned_cols=29  Identities=28%  Similarity=0.686  Sum_probs=23.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf             000788874899999999852473--1598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNL--KPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~--~~~ilsR   82 (338)
                      +.+||||-  +=.+|++.|.++|+  ++.+++|
T Consensus        18 lItGaTG~--iG~~l~~~Ll~~g~~~~v~~~~R   48 (232)
T d2bkaa1          18 FILGASGE--TGRVLLKEILEQGLFSKVTLIGR   48 (232)
T ss_dssp             EEECTTSH--HHHHHHHHHHHHTCCSEEEEEES
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             99889838--99999999996799877999866


No 113
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.67  E-value=2.3  Score=20.03  Aligned_cols=28  Identities=39%  Similarity=0.611  Sum_probs=21.3

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8998230007888748999999998524731
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~   76 (338)
                      ++-.|.   -|+|||-++..+++.+...++.
T Consensus        38 lLl~Gp---~G~GKttl~~~la~~l~~~~~~   65 (227)
T d1sxjc2          38 LLFYGP---PGTGKTSTIVALAREIYGKNYS   65 (227)
T ss_dssp             EEEECS---SSSSHHHHHHHHHHHHHTTSHH
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999889---9877558999999985167776


No 114
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.00  E-value=4.4  Score=17.96  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=20.8

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             88988998230007888748999999998
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      .++|||++  +=--|+|||-.+..|++.+
T Consensus         6 ~~~~iI~i--~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFV--LGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEE--ECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEE--ECCCCCCHHHHHHHHHHHH
T ss_conf             99728999--8999999899999999985


No 115
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=50.76  E-value=5.5  Score=17.31  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=25.6

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ++.+|.   =|+|||-+...++..+..+|..+.|+-
T Consensus        53 ~~I~G~---tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          53 LLVNGA---TGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             EEEEEC---TTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             899907---999689999999999984799889996


No 116
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=50.75  E-value=2.6  Score=19.67  Aligned_cols=26  Identities=38%  Similarity=0.661  Sum_probs=19.1

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             89982300078887489999999985247
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      ++-.|.   =|+|||-++..+++.+....
T Consensus        48 lll~Gp---~G~GKTtla~~iak~l~~~~   73 (231)
T d1iqpa2          48 LLFAGP---PGVGKTTAALALARELFGEN   73 (231)
T ss_dssp             EEEESC---TTSSHHHHHHHHHHHHHGGG
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHHHCC
T ss_conf             999789---99748799999999987314


No 117
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=50.41  E-value=5.7  Score=17.21  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=21.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88874899999999852473159876
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |+|||-+++.++...++.|..++.+.
T Consensus        70 ~~GKT~l~l~~~~~~q~~g~~~vyID   95 (269)
T d1mo6a1          70 SSGKTTVALHAVANAQAAGGVAAFID   95 (269)
T ss_dssp             SSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             74889999999998754898899998


No 118
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=50.07  E-value=5.4  Score=17.36  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             88988998230007888748999999998524
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ..-|+|.|    .||||=||+...|-..+...
T Consensus         4 ~~rplv~I----agGtGiaP~~s~l~~~~~~~   31 (135)
T d1qfja2           4 EERPMILI----AGGTGFSYARSILLTALARN   31 (135)
T ss_dssp             SSSCEEEE----EETTCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEE----ECCEEHHHHHHHHHHHHHCC
T ss_conf             99989999----88625999999999999706


No 119
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.05  E-value=7  Score=16.57  Aligned_cols=30  Identities=17%  Similarity=0.010  Sum_probs=23.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |++||||  =+=.+|++.|.++|++|.++.|.
T Consensus        19 LVTGgsG--fIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          19 SITGAGG--FIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9978887--89999999999782989999689


No 120
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=49.91  E-value=7  Score=16.55  Aligned_cols=34  Identities=26%  Similarity=0.248  Sum_probs=23.9

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8898899823000788874899999999852473159876
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+-.++-.|.=   |||||-++.++++.+   ++....+|
T Consensus        34 ~~~~~Ll~GPp---G~GKTtla~~la~~~---~~~~~~~~   67 (239)
T d1ixsb2          34 PLEHLLLFGPP---GLGKTTLAHVIAHEL---GVNLRVTS   67 (239)
T ss_dssp             CCCCEEEECCT---TSCHHHHHHHHHHHH---TCCEEEEE
T ss_pred             CCCEEEEECCC---CCCHHHHHHHHHHHH---CCCEEECC
T ss_conf             88738988979---987888999999984---98747546


No 121
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.91  E-value=3.6  Score=18.66  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=15.8

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             988998230007888748999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      +.|+.||.   ||+|||-++..+.
T Consensus         3 ~KivllG~---~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLLGA---GESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEECS---TTSSHHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHHH
T ss_conf             69999999---9988899999884


No 122
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=49.74  E-value=3.2  Score=18.93  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=18.5

Q ss_pred             EECCEEE---CCCCCCHHHHHHHHHHHH
Q ss_conf             9823000---788874899999999852
Q gi|254780401|r   48 CVGGFVM---GGTGKTPTALAIAKAVID   72 (338)
Q Consensus        48 ~VGNitv---GGtGKTP~v~~l~~~l~~   72 (338)
                      .=||+.+   -|||||.++..||..+..
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             8863888779985088999999998637


No 123
>d2d00a1 c.149.1.1 (A:6-109) V-type ATP synthase subunit F, AtpF {Thermus thermophilus [TaxId: 274]}
Probab=49.60  E-value=6.9  Score=16.61  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             ECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCC-CEEEECHHHHHHCCCC
Q ss_conf             41553578999887401000012214332348989999999975-6479-8799854663438233
Q gi|254780401|r  229 SGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQA-QQKG-LILVTTAKDAMRLHKR  292 (338)
Q Consensus       229 sGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a-~~~~-~~iiTTEKD~VKL~~~  292 (338)
                      +=||+++.- -     |+....--.|+.|   +.+++.+-+++. ...+ ..|+.||..+-++++.
T Consensus         2 aViGd~dtv-~-----GFrLaGi~~~~v~---~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~~~   58 (104)
T d2d00a1           2 AVIADPETA-Q-----GFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLPDPERA   58 (104)
T ss_dssp             EEEECHHHH-H-----HHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHH
T ss_pred             EEECCHHHH-H-----HHHHCCCEEECCC---CHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_conf             798188889-9-----9998298005379---9899999999997479958999838998765999


No 124
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=49.58  E-value=5.1  Score=17.54  Aligned_cols=33  Identities=36%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |--|+-.|.-   |||||-++.++++.+   |.....++
T Consensus        42 ~~giLl~Gpp---GtGKT~la~aia~~~---~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGPP---GVGKTHLARAVAGEA---RVPFITAS   74 (247)
T ss_dssp             CSEEEEECCT---TSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CCEEEEECCC---CCCHHHHHHHHHHHC---CCCEEEEE
T ss_conf             8648876689---888359999999873---99779978


No 125
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.58  E-value=7.1  Score=16.52  Aligned_cols=19  Identities=11%  Similarity=0.092  Sum_probs=10.8

Q ss_pred             EEEECCCCHHHHHHHHHHH
Q ss_conf             9874155357899988740
Q gi|254780401|r  226 LAFSGIADTEKFFTTVRQL  244 (338)
Q Consensus       226 ~afsGIa~P~~F~~~L~~~  244 (338)
                      ..|+==|+|..-+-.++.+
T Consensus       122 ~v~~LPG~P~a~~~~~~~~  140 (155)
T d2ftsa3         122 IIFALPGNPVSAVVTCNLF  140 (155)
T ss_dssp             EEEEECSSHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHH
T ss_conf             5897799809999999999


No 126
>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}
Probab=49.46  E-value=7.1  Score=16.51  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=26.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||+|-.=+=..+|+.|.++|.+|++.+|.
T Consensus         9 lITGaag~~GIG~AiA~~la~~Ga~V~i~~r~   40 (274)
T d2pd4a1           9 LIVGVANNKSIAYGIAQSCFNQGATLAFTYLN   40 (274)
T ss_dssp             EEECCCSTTSHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99799998389999999999879999999688


No 127
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.95  E-value=7.3  Score=16.45  Aligned_cols=33  Identities=9%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             00078887489999999985247315987604578
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      |.+||||  -+=.+|++.|.++|++|..+.|-+.+
T Consensus         5 lVtG~sG--fiG~~lv~~L~~~g~~V~~~d~~~~~   37 (312)
T d2b69a1           5 LITGGAG--FVGSHLTDKLMMDGHEVTVVDNFFTG   37 (312)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             9978973--89999999999786989999688767


No 128
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=48.76  E-value=3.6  Score=18.61  Aligned_cols=30  Identities=23%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899823000788874899999999852473159876
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |+-+|-   =|||||-++..||+.+.   ..+.+++
T Consensus        35 ilL~Gp---PGtGKT~la~~la~~~~---~~~~~i~   64 (273)
T d1gvnb_          35 FLLGGQ---PGSGKTSLRSAIFEETQ---GNVIVID   64 (273)
T ss_dssp             EEEECC---TTSCTHHHHHHHHHHTT---TCCEEEC
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHH---CCEEEEE
T ss_conf             998897---99889999999999865---1548983


No 129
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.52  E-value=4.8  Score=17.76  Aligned_cols=40  Identities=33%  Similarity=0.455  Sum_probs=28.5

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC-CCC---EEEEEECCC
Q ss_conf             388988998230007888748999999998524-731---598760457
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK-NLK---PGFLSRGYG   85 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~---~~ilsRGYg   85 (338)
                      +..|-.||.||+     .-.||+.++.+.+... |..   +.+-|.|=.
T Consensus         5 k~~ILFVCtgN~-----cRSpmAEai~~~~~~~~~l~~~~~~v~SAG~~   48 (159)
T d1d1qa_           5 KISVAFIALGNF-----CRSPMAEAIFKHEVEKANLENRFNKIDSFGTS   48 (159)
T ss_dssp             CEEEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEEESS
T ss_pred             CCEEEEEECCHH-----HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             757999808727-----58999999999999866998885899952443


No 130
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=48.49  E-value=5.2  Score=17.50  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=17.2

Q ss_pred             EE-EECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             89-982300078887489999999985247315
Q gi|254780401|r   46 VI-CVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        46 VI-~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      || ..|++   |+|||-    ++++|++.|+.+
T Consensus         5 iIgitG~i---gSGKSt----v~~~l~~~G~~v   30 (208)
T d1vhta_           5 IVALTGGI---GSGKST----VANAFADLGINV   30 (208)
T ss_dssp             EEEEECCT---TSCHHH----HHHHHHHTTCEE
T ss_pred             EEEEECCC---CCCHHH----HHHHHHHCCCCE
T ss_conf             99978988---688999----999999879919


No 131
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=48.18  E-value=5  Score=17.58  Aligned_cols=28  Identities=25%  Similarity=0.390  Sum_probs=21.9

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             38898899823000788874899999999852
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      ..+.|+|.||    ||||=||+.-.|-..+..
T Consensus         6 d~~~plilIa----~GtGIaP~~s~l~~~~~~   33 (160)
T d1fnda2           6 DPNATIIMLG----TGTGIAPFRSFLWKMFFE   33 (160)
T ss_dssp             CTTCEEEEEE----EGGGGHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEE----CCHHHHHHHHHHHHHHHH
T ss_conf             9999989997----750489999999999983


No 132
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=48.07  E-value=6.3  Score=16.87  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             CCCCCCHHHHH-HHHHHHHCCCCEEEEEEC
Q ss_conf             78887489999-999985247315987604
Q gi|254780401|r   55 GGTGKTPTALA-IAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~-l~~~l~~~g~~~~ilsRG   83 (338)
                      -|+|||-++.. +++.+...+.++..+|-.
T Consensus        35 ~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          35 SGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             TTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             999999999999999998568874201266


No 133
>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
Probab=47.97  E-value=4.1  Score=18.19  Aligned_cols=21  Identities=10%  Similarity=0.107  Sum_probs=15.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHH
Q ss_conf             389874155357899988740
Q gi|254780401|r  224 KVLAFSGIADTEKFFTTVRQL  244 (338)
Q Consensus       224 ~v~afsGIa~P~~F~~~L~~~  244 (338)
                      +-+.||==|+|......|+-.
T Consensus       125 ~tlI~nLPGsp~av~~~le~I  145 (190)
T d1di6a_         125 QALILNLPGQPKSIKETLEGV  145 (190)
T ss_dssp             TEEEEEECSSHHHHHHHHHEE
T ss_pred             CEEEEECCCCHHHHHHHHHHH
T ss_conf             989998799879999999998


No 134
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.71  E-value=7.6  Score=16.32  Aligned_cols=96  Identities=11%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC-----CCCCCCH-HHHHH
Q ss_conf             78887489999999985247315987604578777755871456788770421233220576-----3465201-22566
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV-----TIVTSDR-KIGVQ  128 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p-----v~V~~~R-~~~~~  128 (338)
                      =|||||-  .|+.-.+.....       .  ........+.+....+.++.++...+....+     ++++... .....
T Consensus        47 TGsGKTl--a~~lp~l~~~~~-------~--~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  115 (207)
T d1t6na_          47 SGMGKTA--VFVLATLQQLEP-------V--TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE  115 (207)
T ss_dssp             TTSCHHH--HHHHHHHHHCCC-------C--TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH
T ss_pred             CCCCCCC--CCCCCEEEEECC-------C--CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf             3332120--013440321024-------6--7786289985122036789999999984388751678845654889999


Q ss_pred             HHCCCCCCEEEECCC-----CCCCCC-CCEEEEEEECCC
Q ss_conf             410245747997183-----223441-230699996184
Q gi|254780401|r  129 MLLQEGVDIIIMDDG-----FHSADL-QADFSLIVVNSH  161 (338)
Q Consensus       129 ~~~~~~~diiIlDDG-----fQh~~l-~rdl~Ivl~d~~  161 (338)
                      .+.+.++|++|.-=|     ++...+ -+++..+++|.-
T Consensus       116 ~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEa  154 (207)
T d1t6na_         116 VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC  154 (207)
T ss_dssp             HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred             HHHHCCCCEEEECCCHHHHHCCCCCEECCCCCEEEHHHH
T ss_conf             987368998990854643202588255430303402344


No 135
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1,  Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.25  E-value=7.7  Score=16.28  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             155357899988740100001221433234898999999997564798
Q gi|254780401|r  230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGL  277 (338)
Q Consensus       230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~  277 (338)
                      .=.+|+.|...++.+|+...+.+.+-|.    ..|++.    |++.+.
T Consensus        97 ~kp~~~~~~~~~~~~~~~~~~~l~igD~----~~di~a----A~~aG~  136 (164)
T d1u7pa_          97 PGSKVTHFERLHHKTGVPFSQMVFFDDE----NRNIID----VGRLGV  136 (164)
T ss_dssp             SSCHHHHHHHHHHHHCCCGGGEEEEESC----HHHHHH----HHTTTC
T ss_pred             CCCCHHHHHHHHHHHCCCHHHEEEECCC----HHHHHH----HHHCCC
T ss_conf             6897699999999968886997987487----878999----998699


No 136
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}
Probab=47.12  E-value=3.1  Score=19.07  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=14.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHCC
Q ss_conf             0078887489999999985247
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      ..||||=||+...|-. +...+
T Consensus        12 Ia~GtGiaP~~s~l~~-~~~~~   32 (148)
T d1fdra2          12 LATGTAIGPYLSILRL-GKDLD   32 (148)
T ss_dssp             EEEGGGGHHHHHHHHH-CCSCT
T ss_pred             EECCEEHHHHHHHHHH-HHHHC
T ss_conf             9767579999999999-99837


No 137
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=47.10  E-value=3.8  Score=18.46  Aligned_cols=16  Identities=31%  Similarity=0.385  Sum_probs=13.5

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      -|||||-++..|++.|
T Consensus        13 pGsGKTTia~~La~~l   28 (173)
T d1rkba_          13 PGVGKTTLGKELASKS   28 (173)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9999899999999997


No 138
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.71  E-value=2.9  Score=19.24  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             CCCCCHHHHHHHHHHHHCCCC
Q ss_conf             888748999999998524731
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLK   76 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~   76 (338)
                      |+|||-++..+++.+......
T Consensus        46 G~GKTt~a~~la~~l~~~~~~   66 (224)
T d1sxjb2          46 GIGKTTSVHCLAHELLGRSYA   66 (224)
T ss_dssp             TSSHHHHHHHHHHHHHGGGHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCC
T ss_conf             987054699999997256643


No 139
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=46.53  E-value=6.8  Score=16.64  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=24.4

Q ss_pred             EECCC-CCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             00788-874899999999852473159876045
Q gi|254780401|r   53 VMGGT-GKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        53 tvGGt-GKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.||| |-.==.+.||+.|.++|+.|.+++-+.
T Consensus         6 ~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~   38 (391)
T d1pn3a_           6 TGCGSRGDTEPLVALAARLRELGADARMCLPPD   38 (391)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH
T ss_conf             858873689999999999998899899997803


No 140
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.32  E-value=4.4  Score=18.00  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             CCCCEEEECCE--EECCCCCCHHHHHHHHHHHHCC
Q ss_conf             88988998230--0078887489999999985247
Q gi|254780401|r   42 APIPVICVGGF--VMGGTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        42 ~~~pVI~VGNi--tvGGtGKTP~v~~l~~~l~~~g   74 (338)
                      ++..+=.+-+|  .+||||=||+...|-..+.+.+
T Consensus        11 ~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~   45 (147)
T d1umka2          11 SNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD   45 (147)
T ss_dssp             SCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT
T ss_pred             CCCCCCCCCEEEEEECCEECCHHHHHHHHHHHCCC
T ss_conf             87531357769999788531658999999996689


No 141
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.97  E-value=4  Score=18.26  Aligned_cols=25  Identities=40%  Similarity=0.574  Sum_probs=18.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8998230007888748999999998524
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      ++-.|.   -|+|||-++..+++.+...
T Consensus        36 lll~Gp---~G~GKTtl~~~i~~~l~~~   60 (237)
T d1sxjd2          36 MLFYGP---PGTGKTSTILALTKELYGP   60 (237)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHHHHH
T ss_pred             EEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             999899---9998499999999997097


No 142
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.68  E-value=5.5  Score=17.28  Aligned_cols=33  Identities=30%  Similarity=0.208  Sum_probs=22.6

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      +.-|+-.|   -=|||||-++.++|+.+   |.....++
T Consensus        41 ~~giLL~G---p~GtGKT~l~~ala~~~---~~~~~~~~   73 (265)
T d1r7ra3          41 SKGVLFYG---PPGCGKTLLAKAIANEC---QANFISIK   73 (265)
T ss_dssp             CCEEEEBC---CTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CCEEEEEC---CCCCCCHHHHHHHHHHH---CCCEEEEE
T ss_conf             87578878---99876304778878771---89479988


No 143
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=45.55  E-value=4.1  Score=18.20  Aligned_cols=19  Identities=5%  Similarity=0.025  Sum_probs=12.5

Q ss_pred             EEEEECCCCHHHHHHHHHH
Q ss_conf             8987415535789998874
Q gi|254780401|r  225 VLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       225 v~afsGIa~P~~F~~~L~~  243 (338)
                      -+.||==|+|......++-
T Consensus       130 ~~if~LPG~P~a~~~~l~~  148 (161)
T d1uuya_         130 TLIINMPGNPNAVAECMEA  148 (161)
T ss_dssp             EEEEEECSSTTHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHH
T ss_conf             9999899997999999999


No 144
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.20  E-value=8.2  Score=16.06  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             CCEEEEEECCCC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             863898741553-------578999887401000012214332348989999999975647
Q gi|254780401|r  222 GKKVLAFSGIAD-------TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQK  275 (338)
Q Consensus       222 ~k~v~afsGIa~-------P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~  275 (338)
                      ...++.+.|--|       -+++.+.|++.|..+ ..+.|+.-|.++..+++.+.+-..++
T Consensus       143 ~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v-~~~~~~ggH~~~~~~~~~~~~wl~~~  202 (203)
T d2r8ba1         143 TRRVLITAGERDPICPVQLTKALEESLKAQGGTV-ETVWHPGGHEIRSGEIDAVRGFLAAY  202 (203)
T ss_dssp             TCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEE-EEEEESSCSSCCHHHHHHHHHHHGGG
T ss_pred             CCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             3202115567898116999999999999789987-99998999868999999999999965


No 145
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=44.94  E-value=4.3  Score=18.08  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=18.0

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             889982300078887489999999985
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      -|+-.|.-   |||||-++..+|+.+.
T Consensus        42 ~vLL~Gpp---GtGKT~la~alA~~~~   65 (246)
T d1d2na_          42 SVLLEGPP---HSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEECST---TSSHHHHHHHHHHHHT
T ss_pred             EEEEECCC---CCCHHHHHHHHHHCCC
T ss_conf             79988969---9988999999862010


No 146
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}
Probab=44.54  E-value=5.9  Score=17.07  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=24.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             98899823000788874899999999852473159876045
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |--||.||+     .-.||+..+++.+-.  -+..+-|-|-
T Consensus         4 ILFVC~gN~-----cRSpmAEai~~~~~~--~~~~~~Sag~   37 (137)
T d1jl3a_           4 IYFLCTGNS-----CRSQMAEGWAKQYLG--DEWKVYSAGI   37 (137)
T ss_dssp             EEEEESSSS-----SHHHHHHHHHHHHSC--TTEEEEEEES
T ss_pred             EEEEECCCH-----HHHHHHHHHHHHHCC--CCEEECCCCC
T ss_conf             999959872-----688999999998679--8765323123


No 147
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=44.50  E-value=4.3  Score=18.09  Aligned_cols=19  Identities=21%  Similarity=0.181  Sum_probs=12.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             78887489999999985247315
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      -|+|||-+    |++|++.|+.+
T Consensus        12 ~gSGKstv----a~~l~~~g~~~   30 (191)
T d1uf9a_          12 IGSGKSTV----AALLRSWGYPV   30 (191)
T ss_dssp             TTSCHHHH----HHHHHHTTCCE
T ss_pred             CCCCHHHH----HHHHHHCCCEE
T ss_conf             87789999----99999879909


No 148
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}
Probab=44.24  E-value=8.5  Score=15.96  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=12.0

Q ss_pred             HHHHHHHHCCC-EEEECHHHHHHCCC
Q ss_conf             99997564798-79985466343823
Q gi|254780401|r  267 YLLDQAQQKGL-ILVTTAKDAMRLHK  291 (338)
Q Consensus       267 ~i~~~a~~~~~-~iiTTEKD~VKL~~  291 (338)
                      ...+.|++.+. .+..|-++--+|.+
T Consensus       129 ~a~~~Ak~~g~~~i~it~~~~~~l~~  154 (191)
T d1x94a_         129 KAIEAAKAKGMKTIALTGKDGGKMAG  154 (191)
T ss_dssp             HHHHHHHHHTCEEEEEEETTCGGGTT
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             22799985797699995689984234


No 149
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=44.12  E-value=8.5  Score=15.95  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |++||||  -+--+|++.|.++|+.+-++.+.
T Consensus         6 LVTGgtG--fIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           6 IVTGGAG--FIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9918886--89999999999779974999984


No 150
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=44.12  E-value=7.2  Score=16.49  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=26.7

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             07888748999999998524731598760457877
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKS   88 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~   88 (338)
                      .||+++  .+..||+.|.++|+.|.|+++.+.+..
T Consensus        12 ~GG~e~--~~~~la~~L~~~G~~V~v~~~~~~~~~   44 (370)
T d2iw1a1          12 FGGLQR--DFMRIASTVAARGHHVRVYTQSWEGDC   44 (370)
T ss_dssp             TCHHHH--HHHHHHHHHHHTTCCEEEEESEECSCC
T ss_pred             CCCHHH--HHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             998999--999999999977997999956787788


No 151
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=43.90  E-value=4.5  Score=17.90  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89889982300078887489999999985
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |--++-+|-   =|||||=++..||+.+.
T Consensus        49 ~~~iLl~GP---pG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGP---TGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECC---TTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHCCC
T ss_conf             866999899---99888899999862132


No 152
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=43.90  E-value=3.9  Score=18.38  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=17.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             88998230007888748999999998
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      +|+-+|   .-|+|||-+...||+.|
T Consensus         4 ~I~l~G---~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVG---PMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEEC---CTTSCHHHHHHHHHHHT
T ss_pred             EEEEEC---CCCCCHHHHHHHHHHHH
T ss_conf             499989---99999999999999996


No 153
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.88  E-value=6.6  Score=16.74  Aligned_cols=13  Identities=46%  Similarity=0.670  Sum_probs=5.4

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             8887489999999
Q gi|254780401|r   56 GTGKTPTALAIAK   68 (338)
Q Consensus        56 GtGKTP~v~~l~~   68 (338)
                      |+|||=+.++++.
T Consensus        95 G~GKT~~a~~~~~  107 (206)
T d2fz4a1          95 GSGKTHVAMAAIN  107 (206)
T ss_dssp             STTHHHHHHHHHH
T ss_pred             CCCCEEHHHHHHH
T ss_conf             9982643776787


No 154
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=43.73  E-value=4.4  Score=18.01  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             007888748999999998524731598
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGF   79 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~i   79 (338)
                      -+||+|-.+    ||++|.++|+.|.-
T Consensus        15 GigG~GMs~----LA~~L~~~G~~VsG   37 (96)
T d1p3da1          15 GIGGAGMSG----IAEILLNEGYQISG   37 (96)
T ss_dssp             TTTSTTHHH----HHHHHHHHTCEEEE
T ss_pred             EECHHHHHH----HHHHHHHCCCEEEE
T ss_conf             877999999----99999848977999


No 155
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}
Probab=43.67  E-value=8.7  Score=15.90  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||||=  +=.+|+++|.++|+.|..+.|-
T Consensus         5 LITGatGf--iGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           5 LITGVTGQ--DGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEECC-
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECC
T ss_conf             99688868--9999999999786989999789


No 156
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.19  E-value=8.8  Score=15.85  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC----CCCCCCHHHHHHHH
Q ss_conf             78887489999999985247315987604578777755871456788770421233220576----34652012256641
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV----TIVTSDRKIGVQML  130 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p----v~V~~~R~~~~~~~  130 (338)
                      =|||||-  .|+.-.++.....        ... ...+.+.+...-+.++-++...+++...    .+++..........
T Consensus        63 TGSGKTl--ayllPil~~l~~~--------~~~-~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~  131 (222)
T d2j0sa1          63 SGTGKTA--TFSISVLQCLDIQ--------VRE-TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK  131 (222)
T ss_dssp             TTSSHHH--HHHHHHHHTCCTT--------SCS-CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH
T ss_pred             CCHHHHH--HHCCCCCCCCCCC--------CCC-CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH
T ss_conf             4341454--4045401100333--------467-4257755528888999999999847563458887511210246787


Q ss_pred             CCCCCCEEEECCC-----CCCCC-CCCEEEEEEECCC
Q ss_conf             0245747997183-----22344-1230699996184
Q gi|254780401|r  131 LQEGVDIIIMDDG-----FHSAD-LQADFSLIVVNSH  161 (338)
Q Consensus       131 ~~~~~diiIlDDG-----fQh~~-l~rdl~Ivl~d~~  161 (338)
                      .+.++|++|.-=|     +++.. --+++..+++|--
T Consensus       132 l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEa  168 (222)
T d2j0sa1         132 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA  168 (222)
T ss_dssp             HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred             HCCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCH
T ss_conf             5148738867987577612001034442303554224


No 157
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.94  E-value=8.9  Score=15.83  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEE---EECCCCC
Q ss_conf             00078887489999999985247315987---6045787
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL---SRGYGRK   87 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~il---sRGYg~~   87 (338)
                      |.+||||  =+=-+|++.|.++|+.|.++   ++++...
T Consensus         6 LITG~tG--fIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~   42 (346)
T d1ek6a_           6 LVTGGAG--YIGSHTVLELLEAGYLPVVIDNFHNAFRGG   42 (346)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCCEEEEECSSSSCBCS
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             9978973--899999999997869799997787421344


No 158
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}
Probab=42.51  E-value=6.7  Score=16.68  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89982300078887489999999985247315987
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      |..=||+   |+|||-++..|++.+..++ .+.++
T Consensus         9 I~iEG~i---GsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           9 IYLDGVY---GIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEECST---TSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEECCC---CCCHHHHHHHHHHHHCCCC-CEEEE
T ss_conf             9998886---6789999999999865699-76998


No 159
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.26  E-value=9.1  Score=15.76  Aligned_cols=29  Identities=14%  Similarity=0.156  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |++||||  =+-.+|++.|.+.|++|..+.|
T Consensus        20 LVTG~tG--fIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          20 LITGVAG--FIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9966887--8999999999978698999978


No 160
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}
Probab=41.94  E-value=9.2  Score=15.72  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||||  =+-.+|++.|.++|++|.++.|
T Consensus         4 LItG~tG--fIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           4 LVTGGSG--YIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9989887--8999999999978497999978


No 161
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=41.89  E-value=5.1  Score=17.55  Aligned_cols=17  Identities=29%  Similarity=0.176  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             78887489999999985
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI   71 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~   71 (338)
                      -|||||-++..||+.+.
T Consensus       163 ~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         163 IDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHCC
T ss_conf             99888999999999859


No 162
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}
Probab=41.83  E-value=9.2  Score=15.71  Aligned_cols=122  Identities=17%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE---------EEECCCCCHHHHCCHHHHHHHC
Q ss_conf             9889982300078887489999999985247315987604578777755---------8714567887704212332205
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISF---------RVDLEKHSAYDVGDEPLLLARR  114 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~---------~v~~~~~~~~~vGDEp~lla~~  114 (338)
                      +-|.|-|++ -.-.|||=  .-|.++-+  .+.++++-+-+-++..+..         ++. +-..+.+.|=+.+++- -
T Consensus        13 a~Il~~g~~-~~~~gKTa--~gLlRy~~--~~~v~~V~~~~aG~~~~~~l~g~~~~IPIv~-s~~~A~~~g~~~liiG-v   85 (338)
T d2g0ta1          13 AAIVAWGQL-GTAHAKTT--YGLLRHSR--LFKPVCVVAEHEGKMASDFVKPVRYDVPVVS-SVEKAKEMGAEVLIIG-V   85 (338)
T ss_dssp             EEEECTTTT-TSGGGHHH--HHHHHHCS--SEEEEEEESSCTTCBGGGTCC-CCSCCBEES-SHHHHHHTTCCEEEEC-C
T ss_pred             EEEEECCCC-CCCCCHHH--HHHHHCCC--CCEEEEEECCCCCCCHHHHCCCCCCCCCEEC-CHHHHHHCCCCEEEEE-E
T ss_conf             899828986-99975676--46774467--8707999777778735432278789988767-8999986699989998-5


Q ss_pred             CC--CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEE---------EEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             76--34652012256641024574799718322344123069---------99961843356655376136521
Q gi|254780401|r  115 AV--TIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFS---------LIVVNSHRGLGNGLVFPAGPLRV  177 (338)
Q Consensus       115 ~p--v~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~---------Ivl~d~~~~~gn~~llPaGpLRE  177 (338)
                      +|  -...++.+..+..+.+.+.|++-   ||.+ .|.-|-+         .-++|-.+|. ...-+..|..++
T Consensus        86 Ap~GG~lp~~w~~~i~~Al~~Gl~Ivs---GLH~-~L~ddpel~~~A~~~g~~i~DvR~p~-~~l~v~~G~~~~  154 (338)
T d2g0ta1          86 SNPGGYLEEQIATLVKKALSLGMDVIS---GLHF-KISQQTEFLKIAHENGTRIIDIRIPP-LELDVLRGGIYR  154 (338)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHTTCEEEE---CCCC---CCHHHHHHHHHHHTCCEEESSSCC-SSCCCCCSGGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEE---CCHH-HHCCCHHHHHHHHHCCCEEEEEECCC-CCCCHHHCCHHC
T ss_conf             266885899999999999985981772---2124-43168899999876799899920899-765621131012


No 163
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=41.23  E-value=9.4  Score=15.65  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             988998230007888748999999998
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      -|||-+|   .-|+|||-+...||+.|
T Consensus         3 ~~Iil~G---~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVG---ARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEES---CTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEC---CCCCCHHHHHHHHHHHH
T ss_conf             9889988---99998899999999994


No 164
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=40.29  E-value=9.7  Score=15.55  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             388988998230007888748999999998524
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      +.|-.++-.|.   =|+|||.++.++++.+...
T Consensus        32 ~~~~~~Ll~Gp---~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          32 RIHHAYLFSGT---RGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CCCSEEEEECS---TTSSHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEEECC---CCCCHHHHHHHHHHHHCCC
T ss_conf             98705988889---9875899999999984685


No 165
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}
Probab=40.10  E-value=9.8  Score=15.53  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=32.9

Q ss_pred             EEEEEECCCCHH---HHHHHHHHHCCC--CCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCEEEECHHHHHH
Q ss_conf             389874155357---899988740100--00122143323489899999-999756479879985466343
Q gi|254780401|r  224 KVLAFSGIADTE---KFFTTVRQLGAL--IEQCYSFGDHAHLSDKKIAY-LLDQAQQKGLILVTTAKDAMR  288 (338)
Q Consensus       224 ~v~afsGIa~P~---~F~~~L~~~g~~--i~~~~~fpDHh~ys~~dl~~-i~~~a~~~~~~iiTTEKD~VK  288 (338)
                      -++.+++.++..   .|++.+...+..  ++....||- ...+..++.. +...+...+.+++++|=.+--
T Consensus       189 vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~-w~~~~~~~~~~l~~l~~~~~k~v~v~E~~~~~  258 (387)
T d1ur4a_         189 VALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPF-WHGTLKNLTSVLTSVADTYGKKVMVAETSYTY  258 (387)
T ss_dssp             EEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTT-TSCCHHHHHHHHHHHHHHHCCEEEEEEECCCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             78722676532778899999986598764002023123-47608999999999999839963899850443


No 166
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.63  E-value=8.6  Score=15.91  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             48999999998524731598760457
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      +|-+..+.+.|+++|++++|+|-|+.
T Consensus        84 ~pg~~~~i~~lk~~G~~~~ivS~~~~  109 (217)
T d1nnla_          84 TPGIRELVSRLQERNVQVFLISGGFR  109 (217)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEEEEEH
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             77799999999737997999899935


No 167
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=39.45  E-value=8.6  Score=15.93  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             3578999887401000012214332
Q gi|254780401|r  233 DTEKFFTTVRQLGALIEQCYSFGDH  257 (338)
Q Consensus       233 ~P~~F~~~L~~~g~~i~~~~~fpDH  257 (338)
                      +|+.|...++.++.+  ..+.+-|+
T Consensus       136 ~p~~~~~~~~~~~~~--~~l~vgDs  158 (187)
T d2fi1a1         136 NPESMLYLREKYQIS--SGLVIGDR  158 (187)
T ss_dssp             SCHHHHHHHHHTTCS--SEEEEESS
T ss_pred             CHHHHHHHHHHCCCC--CEEEEECC
T ss_conf             899999999984999--76999079


No 168
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=39.44  E-value=10  Score=15.46  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=10.4

Q ss_pred             EEEEEECCCCHHHHHHHHHH
Q ss_conf             38987415535789998874
Q gi|254780401|r  224 KVLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       224 ~v~afsGIa~P~~F~~~L~~  243 (338)
                      .++.+-=|-|++.....++.
T Consensus       229 Dvi~igEiRd~~ta~~a~~a  248 (401)
T d1p9ra_         229 DVVMVGEIRDLETAQIAVQA  248 (401)
T ss_dssp             SEEEESCCCSHHHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHH
T ss_conf             88984576875999999999


No 169
>d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]}
Probab=39.16  E-value=10  Score=15.43  Aligned_cols=44  Identities=16%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE-EECCCCCC
Q ss_conf             889982300078887489999999985247315987-60457877
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL-SRGYGRKS   88 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il-sRGYg~~~   88 (338)
                      -|+|=++=..||+-.-+++..+++.|.++||.+... .||||.+.
T Consensus        38 ~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~   82 (218)
T d2fuka1          38 AIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSA   82 (218)
T ss_dssp             EEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCC
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             999799988786789869999999999759859996467876677


No 170
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.98  E-value=10  Score=15.41  Aligned_cols=20  Identities=10%  Similarity=0.212  Sum_probs=10.7

Q ss_pred             EEEEEECCCCHHHHHHHHHH
Q ss_conf             38987415535789998874
Q gi|254780401|r  224 KVLAFSGIADTEKFFTTVRQ  243 (338)
Q Consensus       224 ~v~afsGIa~P~~F~~~L~~  243 (338)
                      +++++|+-++++...+.++.
T Consensus        73 piI~lt~~~~~~~~~~a~~~   92 (119)
T d1zh2a1          73 PVIVLSARSEESDKIAALDA   92 (119)
T ss_dssp             CEEEEESCCSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHC
T ss_conf             67999515899999999986


No 171
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.80  E-value=6.9  Score=16.62  Aligned_cols=20  Identities=20%  Similarity=0.522  Sum_probs=15.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHH
Q ss_conf             98899823000788874899999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAI   66 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l   66 (338)
                      +.|+.||.   +|+|||-++..+
T Consensus         3 iKivllG~---~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGA---GESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECS---TTSSHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHH
T ss_conf             89999989---999989999988


No 172
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=38.78  E-value=10  Score=15.39  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      .|..+.+-.+|...+.+..+|+||+|
T Consensus        26 ~v~~a~~~~eal~~~~~~~~dlillD   51 (117)
T d2a9pa1          26 EVVTAFNGREALEQFEAEQPDIIILD   51 (117)
T ss_dssp             EEEEESSHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf             99998787999999983698789850


No 173
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}
Probab=38.68  E-value=10  Score=15.38  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             EEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             000788-874899999999852473159876045
Q gi|254780401|r   52 FVMGGT-GKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        52 itvGGt-GKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |+.+|| |-.==.+.|++.|.++|+.|.+++-+.
T Consensus         5 ~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~   38 (401)
T d1iira_           5 LATCGSRGDTEPLVALAVRVRDLGADVRMCAPPD   38 (401)
T ss_dssp             EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9889872689999999999998799899996830


No 174
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=38.49  E-value=7.6  Score=16.29  Aligned_cols=14  Identities=7%  Similarity=0.285  Sum_probs=5.0

Q ss_pred             EECCCCHHHHHHHH
Q ss_conf             74155357899988
Q gi|254780401|r  228 FSGIADTEKFFTTV  241 (338)
Q Consensus       228 fsGIa~P~~F~~~L  241 (338)
                      .-|=-+|+...+.+
T Consensus       209 YGGSV~~~N~~~i~  222 (251)
T d2btma_         209 YGGSVKPDNIRDFL  222 (251)
T ss_dssp             EESSCCTTTHHHHH
T ss_pred             EECCCCHHHHHHHH
T ss_conf             50897986999996


No 175
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=38.31  E-value=5.5  Score=17.32  Aligned_cols=17  Identities=12%  Similarity=0.216  Sum_probs=14.7

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             78887489999999985
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI   71 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~   71 (338)
                      =|+|||-++..|++.|.
T Consensus        12 ~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_          12 SSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             TTSSHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHCC
T ss_conf             99998999999999728


No 176
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=37.99  E-value=11  Score=15.31  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=23.1

Q ss_pred             CCCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCC
Q ss_conf             78887489-999999985247315987604578777755871456788770421233220576
Q gi|254780401|r   55 GGTGKTPT-ALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAV  116 (338)
Q Consensus        55 GGtGKTP~-v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~p  116 (338)
                      =|||||=. ++-+.+.+........-.++..   ......+.+....+.++..+-..+....+
T Consensus        67 TGsGKTlayllp~l~~l~~~~~~~~~~~~~~---~~~alil~pt~el~~q~~~~~~~~~~~~~  126 (238)
T d1wrba1          67 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTA---YPKCLILAPTRELAIQILSESQKFSLNTP  126 (238)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTCC------CCB---CCSEEEECSSHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCC---CCEEEEECCCHHHHCCHHEEEEECCCCCC
T ss_conf             7777511319999999972221112456777---83699953514430100101110035788


No 177
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=37.95  E-value=7.4  Score=16.40  Aligned_cols=23  Identities=26%  Similarity=0.160  Sum_probs=13.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|+|||-++..|+    +......++|
T Consensus        11 pGsGKTTla~~L~----~~~~~~~~~~   33 (152)
T d1ly1a_          11 PGSGKSTWAREFI----AKNPGFYNIN   33 (152)
T ss_dssp             TTSSHHHHHHHHH----HHSTTEEEEC
T ss_pred             CCCCHHHHHHHHH----HHCCCCEEEC
T ss_conf             9999999999999----9579979960


No 178
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}
Probab=37.47  E-value=6.8  Score=16.64  Aligned_cols=21  Identities=33%  Similarity=0.562  Sum_probs=16.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHC
Q ss_conf             007888748999999998524
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .+||||=||+...+-..++..
T Consensus        18 IAgGtGIaP~~s~l~~~~~~~   38 (146)
T d2cnda2          18 ICGGSGITPMYQIIQAVLRDQ   38 (146)
T ss_dssp             EEEGGGHHHHHHHHHHHHHTT
T ss_pred             EECEEEHHHHHHHHHHHHHHC
T ss_conf             966288749999999999847


No 179
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=37.39  E-value=5.4  Score=17.39  Aligned_cols=17  Identities=29%  Similarity=0.421  Sum_probs=13.6

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             78887489999999985
Q gi|254780401|r   55 GGTGKTPTALAIAKAVI   71 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~   71 (338)
                      -|+|||-++..|++.+.
T Consensus        11 ~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1          11 AGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             TTSSHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHCC
T ss_conf             99998999999999809


No 180
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=37.27  E-value=2.5  Score=19.78  Aligned_cols=30  Identities=27%  Similarity=0.281  Sum_probs=17.6

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9889982300078887489999999985247315987
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      .-|..-|+.   |+|||-++..|++.|    ..+.++
T Consensus        10 ~~I~ieG~~---GsGKTTl~~~L~~~l----~~~~~~   39 (197)
T d2vp4a1          10 FTVLIEGNI---GSGKTTYLNHFEKYK----NDICLL   39 (197)
T ss_dssp             EEEEEECST---TSCHHHHHHTTGGGT----TTEEEE
T ss_pred             EEEEEECCC---CCCHHHHHHHHHHHH----CCCEEE
T ss_conf             199988999---988899999999870----786789


No 181
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=36.66  E-value=6.8  Score=16.65  Aligned_cols=17  Identities=29%  Similarity=0.583  Sum_probs=14.6

Q ss_pred             ECCCCCCHHHHHHHHHH
Q ss_conf             07888748999999998
Q gi|254780401|r   54 MGGTGKTPTALAIAKAV   70 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l   70 (338)
                      .=|||||-++..|++.|
T Consensus        14 ~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_          14 VSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             STTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             99989899999999986


No 182
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.65  E-value=11  Score=15.17  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=23.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             00078887489999999985247315987604
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      |.+||||  =+-.+|++.|.++|++|..+.|-
T Consensus         5 LVTGatG--fIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           5 LVTGGAG--YIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9918874--79999999999786959999788


No 183
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=36.62  E-value=6.1  Score=16.98  Aligned_cols=22  Identities=9%  Similarity=0.179  Sum_probs=14.5

Q ss_pred             CCEEEEEEC-CCCHHHHHHHHHH
Q ss_conf             863898741-5535789998874
Q gi|254780401|r  222 GKKVLAFSG-IADTEKFFTTVRQ  243 (338)
Q Consensus       222 ~k~v~afsG-Ia~P~~F~~~L~~  243 (338)
                      +.+++++|| +.||+.|-+.|..
T Consensus       172 ~~~~l~lSATl~n~~~~~~~l~~  194 (202)
T d2p6ra3         172 ALRVIGLSATAPNVTEIAEWLDA  194 (202)
T ss_dssp             TCEEEEEECCCTTHHHHHHHTTC
T ss_pred             CCCEEEECCCCCCHHHHHHHCCC
T ss_conf             98389981788759999987089


No 184
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=36.55  E-value=5.6  Score=17.24  Aligned_cols=25  Identities=40%  Similarity=0.480  Sum_probs=18.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             9889982300078887489999999985
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      +-|+..|.   -|+|||-++..|++.|.
T Consensus         6 ~~I~i~G~---~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           6 INILITGT---PGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CEEEEECS---TTSSHHHHHHHHHHHST
T ss_pred             CEEEEEEC---CCCCHHHHHHHHHHHHC
T ss_conf             88999828---99988999999999858


No 185
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.14  E-value=6.1  Score=16.96  Aligned_cols=33  Identities=30%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |--|+-.|-   =|||||-++.++++.+   +.....++
T Consensus        38 ~~giLL~Gp---pGtGKT~l~~ala~~~---~~~~~~i~   70 (258)
T d1e32a2          38 PRGILLYGP---PGTGKTLIARAVANET---GAFFFLIN   70 (258)
T ss_dssp             CCEEEEECC---TTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred             CCEEEEECC---CCCCCHHHHHHHHHHH---CCEEEEEE
T ss_conf             864687669---9888308999999874---88379997


No 186
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
Probab=36.12  E-value=5.7  Score=17.17  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=17.7

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             98230007888748999999998524
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      .=||+   |+|||-++..|++.+...
T Consensus         9 IEG~i---GsGKTTl~~~La~~l~~~   31 (329)
T d1e2ka_           9 IDGPH---GMGKTTTTQLLVALGSRD   31 (329)
T ss_dssp             ECSCT---TSSHHHHHHHHTC----C
T ss_pred             EECCC---CCCHHHHHHHHHHHHCCC
T ss_conf             98986---778999999999981779


No 187
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.05  E-value=10  Score=15.34  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=16.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             9889982300078887489999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      ..|+.||.   .|+|||-++..++.
T Consensus         6 ~Ki~vvG~---~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGN---SSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECS---TTSSHHHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHHHC
T ss_conf             89999999---99198999999973


No 188
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.80  E-value=11  Score=15.08  Aligned_cols=17  Identities=6%  Similarity=0.106  Sum_probs=8.9

Q ss_pred             EEEEEECCCCHHHHHHH
Q ss_conf             38987415535789998
Q gi|254780401|r  224 KVLAFSGIADTEKFFTT  240 (338)
Q Consensus       224 ~v~afsGIa~P~~F~~~  240 (338)
                      .++++||-++++.-.+.
T Consensus        75 pii~lt~~~~~~~~~~a   91 (121)
T d1xhfa1          75 ALMFLTGRDNEVDKILG   91 (121)
T ss_dssp             EEEEEESCCSHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHH
T ss_conf             59999888999999999


No 189
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.54  E-value=7.4  Score=16.41  Aligned_cols=22  Identities=36%  Similarity=0.529  Sum_probs=17.4

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             8998230007888748999999998
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      ||-+|-   -|+|||-+...|++.|
T Consensus         4 IvliG~---~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGL---PGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECS---TTSSHHHHHHHHHHHH
T ss_pred             EEEECC---CCCCHHHHHHHHHHHH
T ss_conf             899889---9998899999999984


No 190
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=35.26  E-value=12  Score=15.02  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=11.6

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.+=.+|...+.+..+|+||+|
T Consensus        27 v~~~~~~~~al~~l~~~~~dlil~D   51 (140)
T d1qkka_          27 VSSFASATEALAGLSADFAGIVISD   51 (140)
T ss_dssp             EEEESCHHHHHHTCCTTCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHCCCCCHHHHH
T ss_conf             9982774789999745585167776


No 191
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}
Probab=35.22  E-value=12  Score=15.01  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             33889889982300078887489999999985247315987604578
Q gi|254780401|r   40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGR   86 (338)
Q Consensus        40 ~~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~   86 (338)
                      ...|-|.|-|+|-        |+..+..+.|++.|.+-.++-.||++
T Consensus        21 ~~~PK~Ll~i~gk--------plI~~~i~~l~~~gi~~i~iv~gy~~   59 (259)
T d1tzfa_          21 IVKPKPMVEIGGK--------PILWHIMKMYSVHGIKDFIICCGYKG   59 (259)
T ss_dssp             -CCCGGGCEETTE--------EHHHHHHHHHHHTTCCEEEEEECTTH
T ss_pred             CCCCCCCEEECCE--------EHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf             7998101499999--------99999999999839974531200217


No 192
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=35.16  E-value=7.3  Score=16.43  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=15.2

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             982300078887489999999985247315
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKP   77 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~   77 (338)
                      ..|++   |||||-    ++++|++.|+.+
T Consensus         7 ITG~i---gSGKSt----v~~~l~~~G~~v   29 (205)
T d1jjva_           7 LTGGI---GSGKTT----IANLFTDLGVPL   29 (205)
T ss_dssp             EECST---TSCHHH----HHHHHHTTTCCE
T ss_pred             EECCC---CCCHHH----HHHHHHHCCCEE
T ss_conf             88888---788999----999999879939


No 193
>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}
Probab=34.94  E-value=12  Score=14.98  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||+|-.=+-..+|+.|.+.|.+|.+..|
T Consensus         9 lITGass~~GIG~aiA~~l~~~G~~V~i~~~   39 (258)
T d1qsga_           9 LVTGVASKLSIAYGIAQAMHREGAELAFTYQ   39 (258)
T ss_dssp             EECCCCSTTSHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9989998511899999999986999999958


No 194
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}
Probab=34.57  E-value=7.6  Score=16.32  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             9889982300078887489999999985247315987604
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      ++||.||.=..|        ..+|..|.+.|++|.+|=||
T Consensus         8 ~dvIVVGsG~aG--------~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGSGYGG--------AVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEEECCSHHH--------HHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCCHHH--------HHHHHHHHHCCCEEEEEECC
T ss_conf             979997847899--------99999998787939999678


No 195
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}
Probab=34.33  E-value=12  Score=14.92  Aligned_cols=12  Identities=0%  Similarity=-0.139  Sum_probs=4.3

Q ss_pred             HHHHHCCCCCCE
Q ss_conf             566410245747
Q gi|254780401|r  126 GVQMLLQEGVDI  137 (338)
Q Consensus       126 ~~~~~~~~~~di  137 (338)
                      +++++.+.+..+
T Consensus       129 a~~~Ak~~g~~t  140 (188)
T d1tk9a_         129 ALKKAKELNMLC  140 (188)
T ss_dssp             HHHHHHHTTCEE
T ss_pred             HHHHHHHHCCEE
T ss_conf             889998511538


No 196
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.50  E-value=12  Score=14.87  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=14.3

Q ss_pred             CEEEECCEEECCCCCCHHHHHHH
Q ss_conf             88998230007888748999999
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .|+.||+   .|+|||-++..++
T Consensus         6 Ki~lvG~---~~vGKTsll~~~~   25 (169)
T d1x1ra1           6 KLVVVGD---GGVGKSALTIQFF   25 (169)
T ss_dssp             EEEEECC---TTSSHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHH
T ss_conf             9999998---9959899999997


No 197
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=33.15  E-value=12  Score=14.79  Aligned_cols=19  Identities=21%  Similarity=0.454  Sum_probs=15.9

Q ss_pred             CCCCCHHHHHHHHHHHHCC
Q ss_conf             8887489999999985247
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKN   74 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g   74 (338)
                      |+|||=.++.++..+.+++
T Consensus        89 GlGKT~qaia~l~~l~~~~  107 (298)
T d1z3ix2          89 GLGKTLQCITLIWTLLKQS  107 (298)
T ss_dssp             TSCHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHC
T ss_conf             7889999999999999846


No 198
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=33.03  E-value=12  Score=14.77  Aligned_cols=65  Identities=11%  Similarity=-0.024  Sum_probs=36.8

Q ss_pred             CEEEEEECCCCH----HHHHHHHHHHC------CCCCCCCCCCCCC-CCCHHHHHH-HHHHHHHCCCEEEECHHHHH
Q ss_conf             638987415535----78999887401------0000122143323-489899999-99975647987998546634
Q gi|254780401|r  223 KKVLAFSGIADT----EKFFTTVRQLG------ALIEQCYSFGDHA-HLSDKKIAY-LLDQAQQKGLILVTTAKDAM  287 (338)
Q Consensus       223 k~v~afsGIa~P----~~F~~~L~~~g------~~i~~~~~fpDHh-~ys~~dl~~-i~~~a~~~~~~iiTTEKD~V  287 (338)
                      .++.+..+-|.+    ..|++.+...|      +.++....||.=| ..+..++.. +...+.+.+.+++.+|=-+.
T Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Dvig~syYp~w~~~~~l~~l~~~l~~l~~~y~k~v~I~Et~~~  250 (334)
T d1foba_         174 PKIMIHLDDGWSWDQQNYFYETVLATGELLSTDFDYFGVSYYPFYSASATLASLKTSLANLQSTYDKPVVVVETNWP  250 (334)
T ss_dssp             CEEEEEESCTTCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCSSSCTTCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             31344014678704667999999962787787767688742788888554999999999999970986178873156


No 199
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.86  E-value=9.3  Score=15.68  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=16.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             9889982300078887489999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +.||.+|.   +|+|||-++..+..
T Consensus         3 ~Kiv~lG~---~~vGKTsll~r~~~   24 (200)
T d2bcjq2           3 LKLLLLGT---GESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEES---TTSSHHHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHHHC
T ss_conf             59999999---99988999999967


No 200
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Probab=32.83  E-value=13  Score=14.75  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             3000788874899999999852473159876045
Q gi|254780401|r   51 GFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        51 NitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |+.+-|+|++=.  .+|++|.++|+++.|+-|--
T Consensus         4 ~IliiGaG~~G~--~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTR--PTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHH--HHHHHHHTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHH--HHHHHHHHCCCEEEEEECCH
T ss_conf             799987879999--99999984979799998974


No 201
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.79  E-value=10  Score=15.32  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=15.8

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             8988998230007888748999999
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .+.|+.||+   .|+|||-++..++
T Consensus         2 eiKi~lvG~---~~vGKTsli~r~~   23 (168)
T d2atva1           2 EVKLAIFGR---AGVGKSALVVRFL   23 (168)
T ss_dssp             CEEEEEECC---TTSSHHHHHHHHH
T ss_pred             CEEEEEECC---CCCCHHHHHHHHH
T ss_conf             679999998---9978999999997


No 202
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.78  E-value=13  Score=14.75  Aligned_cols=48  Identities=8%  Similarity=0.093  Sum_probs=27.1

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             63898741553578999887401000012214332348989999999975647987
Q gi|254780401|r  223 KKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLI  278 (338)
Q Consensus       223 k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~  278 (338)
                      ...+-+||   |..+.+.+++.=.+     .+-.|-.++..+.+...+..++.+-.
T Consensus       111 ~~~~yiCG---p~~M~~~v~~~L~~-----i~~~~~~~~~~~a~~~~~~l~~~~r~  158 (165)
T d1f20a2         111 GGHIYVCG---DVTMAADVLKAIQR-----IMTQQGKLSEEDAGVFISRLRDDNRY  158 (165)
T ss_dssp             CCEEEEEE---CHHHHHHHHHHHHH-----HHHHHTTCCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEEC---CCCHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHCCCE
T ss_conf             95899978---83048999999999-----99985599999999999999987988


No 203
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=32.70  E-value=13  Score=14.74  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=22.5

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      -.++-||.-   |+|||-+|..||+.+.+.
T Consensus        40 ~n~lLVG~~---GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          40 NNPLLVGES---GVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             CEEEEECCT---TSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEECCC---CCCHHHHHHHHHHHHHHC
T ss_conf             896798889---886779999999999817


No 204
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=32.57  E-value=6.3  Score=16.86  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=15.1

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             788874899999999852473159876
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      =|||||-++..|++.+   |.....++
T Consensus        13 ~GsGKSTia~~La~~l---g~~~~~~~   36 (176)
T d1zp6a1          13 PGSGKSTIAEALANLP---GVPKVHFH   36 (176)
T ss_dssp             TTSCHHHHHHHHHTCS---SSCEEEEC
T ss_pred             CCCCHHHHHHHHHHHH---CCCEEEEC
T ss_conf             9998899999999995---99979906


No 205
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=32.03  E-value=9.6  Score=15.57  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             988998230007888748999999998524
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDK   73 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~   73 (338)
                      -.+|-||.-   |+|||-+|.-||+.+.+.
T Consensus        44 ~n~lLvG~p---GVGKTalv~~LA~ri~~~   70 (195)
T d1jbka_          44 NNPVLIGEP---GVGKTAIVEGLAQRIING   70 (195)
T ss_dssp             CEEEEECCT---TSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECC---CCCCHHHHHHHHHHHHHC
T ss_conf             873998358---754479999999999808


No 206
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.92  E-value=1.8  Score=20.71  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             EECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             982300078887489999999985247315987
Q gi|254780401|r   48 CVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        48 ~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      .-|+.   |+|||-++..|++.|.+.++.+...
T Consensus         7 ieG~d---GsGKST~~~~L~~~l~~~~~~~e~~   36 (241)
T d1p5zb_           7 IEGNI---AAGKSTFVNILKQLCEDWEVVPEPV   36 (241)
T ss_dssp             EECST---TSSHHHHHTTTGGGCTTEEEECCCH
T ss_pred             EECCC---CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             98788---8779999999999973589836663


No 207
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.61  E-value=11  Score=15.24  Aligned_cols=20  Identities=35%  Similarity=0.619  Sum_probs=14.5

Q ss_pred             CEEEECCEEECCCCCCHHHHHHH
Q ss_conf             88998230007888748999999
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .|+.||+   .|+|||-++..++
T Consensus         4 Ki~viG~---~~vGKTsLi~r~~   23 (171)
T d2erxa1           4 RVAVFGA---GGVGKSSLVLRFV   23 (171)
T ss_dssp             EEEEECC---TTSSHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHH
T ss_conf             8999998---9979899999997


No 208
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=31.55  E-value=13  Score=14.61  Aligned_cols=39  Identities=13%  Similarity=0.197  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             578999887401000012214332348989999999975
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQA  272 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a  272 (338)
                      ++-..+++.+.|---+....-.-+|.|+..|++.|++++
T Consensus        18 ~~el~~~~~e~g~iev~C~fC~~~Y~f~~~dl~~l~~~~   56 (57)
T d1vzya2          18 KKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQT   56 (57)
T ss_dssp             HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHCC
T ss_conf             999999997399789980187998878999999998643


No 209
>d1vjpa2 d.81.1.3 (A:210-316) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}
Probab=31.19  E-value=12  Score=14.95  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCC
Q ss_conf             88874899999999852473159-8760457877
Q gi|254780401|r   56 GTGKTPTALAIAKAVIDKNLKPG-FLSRGYGRKS   88 (338)
Q Consensus        56 GtGKTP~v~~l~~~l~~~g~~~~-ilsRGYg~~~   88 (338)
                      .||-|.+--.|+.+|.++|.+|- +.|---+|..
T Consensus         1 ~tG~T~~~~~La~~~~~Rg~kv~~~~q~N~~GN~   34 (107)
T d1vjpa2           1 ATGATPFTADVLSHLAQRNRYVKDVAQFNIGGNM   34 (107)
T ss_dssp             SCSHHHHHHHHHHHHHHTTCEEEEEEEEEEECCG
T ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCH
T ss_conf             9872248999999999869950479988515761


No 210
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=31.14  E-value=12  Score=14.93  Aligned_cols=11  Identities=18%  Similarity=0.746  Sum_probs=5.3

Q ss_pred             EEECCEEECCC
Q ss_conf             99823000788
Q gi|254780401|r   47 ICVGGFVMGGT   57 (338)
Q Consensus        47 I~VGNitvGGt   57 (338)
                      |.+||--+=||
T Consensus         5 iIigNWKMN~~   15 (255)
T d1trea_           5 LVMGNWKLNGS   15 (255)
T ss_dssp             EEEEECCBCCC
T ss_pred             EEEEECCCCCC
T ss_conf             89998131799


No 211
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=31.06  E-value=13  Score=14.55  Aligned_cols=25  Identities=16%  Similarity=-0.067  Sum_probs=18.1

Q ss_pred             CCCCH--HHHHHHHHHHHCCCCEEEEE
Q ss_conf             88748--99999999852473159876
Q gi|254780401|r   57 TGKTP--TALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        57 tGKTP--~v~~l~~~l~~~g~~~~ils   81 (338)
                      +|.+|  +..++.+.++++|++.-+..
T Consensus        57 ~~~~~~GL~~~i~~f~~~~~~~~~~~~   83 (282)
T d1rifa_          57 NRLLPFGLVGQIKKFCDNFGYKAWIDP   83 (282)
T ss_dssp             TCEEEGGGGGGHHHHHHHTTCCEEECG
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             333026899999999986377314302


No 212
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.91  E-value=9.7  Score=15.54  Aligned_cols=16  Identities=38%  Similarity=0.389  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      =|+|||-.+..|++.+
T Consensus         9 pGSGKsT~a~~La~~~   24 (182)
T d1zina1           9 PGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9999899999999987


No 213
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=30.71  E-value=5.5  Score=17.32  Aligned_cols=36  Identities=11%  Similarity=-0.077  Sum_probs=25.7

Q ss_pred             EEECCEEE----CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99823000----7888748999999998524731598760
Q gi|254780401|r   47 ICVGGFVM----GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        47 I~VGNitv----GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +.-|.+++    .|+|||-++..+|-.+...+..+...+-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~   70 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA   70 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTT
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             6288599999179999899999999999853797437753


No 214
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}
Probab=30.64  E-value=14  Score=14.51  Aligned_cols=29  Identities=14%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||||  -+=-+|++.|.++|++|.++-|
T Consensus         4 LVTGatG--fIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           4 LITGGCG--FLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9989872--8999999999978398999979


No 215
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.61  E-value=11  Score=15.18  Aligned_cols=21  Identities=33%  Similarity=0.543  Sum_probs=16.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             988998230007888748999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      +.|+.||.   .|+|||-++..+.
T Consensus         6 iKivviG~---~~vGKTsli~~~~   26 (183)
T d1mh1a_           6 IKCVVVGD---GAVGKTCLLISYT   26 (183)
T ss_dssp             EEEEEECS---TTSSHHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHHH
T ss_conf             99999999---9979999999997


No 216
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.60  E-value=14  Score=14.50  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=18.9

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8899823000788874899999999852
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      |||.+|=-   |+|||.+...|++.+-.
T Consensus         2 pIvl~GPs---GsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPS---GAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCT---TSSHHHHHHHHHHHHTT
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHCCC
T ss_conf             19999999---99999999999974887


No 217
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=30.43  E-value=5.6  Score=17.23  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=16.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf             00788874899999999852473159
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPG   78 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~   78 (338)
                      =+||+|-.+    ||++|+++|+.|.
T Consensus         8 GIgG~GMs~----LA~~L~~~G~~Vs   29 (89)
T d1j6ua1           8 GIGGIGMSA----VALHEFSNGNDVY   29 (89)
T ss_dssp             TTTSHHHHH----HHHHHHHTTCEEE
T ss_pred             EECHHHHHH----HHHHHHHCCCEEE
T ss_conf             577899999----9999996899699


No 218
>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas putida [TaxId: 303]}
Probab=30.41  E-value=14  Score=14.48  Aligned_cols=40  Identities=15%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             8998230007888748999999998524731598760457
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      ++=+=++..|+||=.|-++-....+.++|..|+|=++|==
T Consensus       101 ~~Rln~l~~G~SGV~~~~~~~L~~~lN~~v~P~VP~~GSv  140 (509)
T d1gkma_         101 VLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSV  140 (509)
T ss_dssp             HHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEECCC
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999985468887577899999999958972336687887


No 219
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}
Probab=30.12  E-value=14  Score=14.45  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=22.6

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +.+||||  -+=.+|++.|.++|+.+..+.|
T Consensus         4 lItG~tG--fIG~~l~~~L~~~g~~v~~~~~   32 (322)
T d1r6da_           4 LVTGGAG--FIGSHFVRQLLAGAYPDVPADE   32 (322)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTSCTTSCCSE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCCCCCCE
T ss_conf             9988877--8999999999977997667765


No 220
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Probab=29.89  E-value=14  Score=14.42  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=9.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78887489999999985247315987
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      |.+...|+..-|++.+   |..+-||
T Consensus        26 G~~a~~Pvis~l~r~~---~v~vnIL   48 (95)
T d3ceda1          26 GSTTTEPIVSSLSTAY---DIKINIL   48 (95)
T ss_dssp             EESCHHHHHHHHHHHH---TCCCEEE
T ss_pred             CCCCCCHHHHHHHHHH---CCCEEEE
T ss_conf             8865851999999985---9963899


No 221
>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}
Probab=29.80  E-value=14  Score=14.41  Aligned_cols=29  Identities=10%  Similarity=-0.047  Sum_probs=23.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||++  -+=..+|+.|.+.|++|.+++|
T Consensus         5 lITGas~--GIG~aiA~~la~~Ga~V~~~~~   33 (257)
T d1fjha_           5 VISGCAT--GIGAATRKVLEAAGHQIVGIDI   33 (257)
T ss_dssp             EEETTTS--HHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9908888--9999999999987998999979


No 222
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}
Probab=29.78  E-value=14  Score=14.41  Aligned_cols=103  Identities=20%  Similarity=0.321  Sum_probs=54.9

Q ss_pred             ECCEEECCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCH---
Q ss_conf             823000788--874899999999852473159876045787777558714567887704212332205763465201---
Q gi|254780401|r   49 VGGFVMGGT--GKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDR---  123 (338)
Q Consensus        49 VGNitvGGt--GKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R---  123 (338)
                      ||=+|.||-  |=-..+..+++...+.|+++--+-.||.|-..+.+...+.    .++.+    +.+..-.+.+..|   
T Consensus         5 IgIltsGG~~pg~Na~i~~~v~~~~~~~~~v~g~~~G~~Gl~~~~~~~l~~----~~v~~----~~~~gGs~lgt~R~~~   76 (320)
T d1pfka_           5 IGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDR----YSVSD----MINRGGTFLGSARFPE   76 (320)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECS----GGGTT----CTTCCSCTTCCCCCGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCH----HHHHH----HHHCCCCCCCCCCCCC
T ss_conf             999866888668899999999999878998999946688872798572999----99988----9846998523147887


Q ss_pred             -------HHHHHHHCCCCCCEEEE---CCCCCCCCCCC--EEEEEEEC
Q ss_conf             -------22566410245747997---18322344123--06999961
Q gi|254780401|r  124 -------KIGVQMLLQEGVDIIIM---DDGFHSADLQA--DFSLIVVN  159 (338)
Q Consensus       124 -------~~~~~~~~~~~~diiIl---DDGfQh~~l~r--dl~Ivl~d  159 (338)
                             .+.+..+.+.+.|.++.   ||.++.-..-.  .+.++.+.
T Consensus        77 ~~~~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~l~~~~~~vigiP  124 (320)
T d1pfka_          77 FRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIGLP  124 (320)
T ss_dssp             GGSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             766555503888998769988999679658999999875166522230


No 223
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=29.76  E-value=10  Score=15.32  Aligned_cols=17  Identities=29%  Similarity=0.370  Sum_probs=14.6

Q ss_pred             ECCCCCCHHHHHHHHHH
Q ss_conf             07888748999999998
Q gi|254780401|r   54 MGGTGKTPTALAIAKAV   70 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l   70 (338)
                      .-|+|||-.+..|++.|
T Consensus         8 ~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           8 LPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             99998799999999987


No 224
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.72  E-value=10  Score=15.31  Aligned_cols=16  Identities=31%  Similarity=0.542  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      =|||||-.+..|++.+
T Consensus         9 pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           9 PGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9999799999999998


No 225
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.58  E-value=14  Score=14.38  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=11.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |.++.+-.+|...+.+..+|+||+|
T Consensus        30 v~~a~~~~~a~~~l~~~~~dlii~D   54 (123)
T d1krwa_          30 CTTFENGNEVLAALASKTPDVLLSD   54 (123)
T ss_dssp             EEEESSSHHHHHHHTTCCCSEEEEC
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEEH
T ss_conf             9995888999999982788799865


No 226
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}
Probab=29.47  E-value=14  Score=14.37  Aligned_cols=28  Identities=18%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             ECCC-C-CCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0788-8-748999999998524731598760
Q gi|254780401|r   54 MGGT-G-KTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        54 vGGt-G-KTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      ++|| | =+|++ .||+.|.++|+.|.+++-
T Consensus         7 ~~gt~Ghv~P~l-~lA~~L~~rGh~V~~~t~   36 (401)
T d1rrva_           7 VCGTRGDVEIGV-ALADRLKALGVQTRMCAP   36 (401)
T ss_dssp             EESCHHHHHHHH-HHHHHHHHTTCEEEEEEC
T ss_pred             CCCCHHHHHHHH-HHHHHHHHCCCEEEEEEC
T ss_conf             898756899999-999999987998999978


No 227
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=29.28  E-value=12  Score=14.80  Aligned_cols=25  Identities=28%  Similarity=0.127  Sum_probs=11.9

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.+-.+|...+.+..+|+||+|
T Consensus        27 v~~a~~g~eal~~l~~~~~dliilD   51 (119)
T d2pl1a1          27 VDDAEDAKEADYYLNEHIPDIAIVD   51 (119)
T ss_dssp             EEEESSHHHHHHHHHHSCCSEEEEC
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEHH
T ss_conf             9997887999999983464555342


No 228
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.26  E-value=14  Score=14.35  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEEEC
Q ss_conf             88998230007888748999999998524-7315987604
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDK-NLKPGFLSRG   83 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~-g~~~~ilsRG   83 (338)
                      |||.+|=-   |+|||-+...|++.+... .+-+..-+|.
T Consensus         3 pIvl~Gps---G~GK~tl~~~L~~~~~~~~~~~~~~TTR~   39 (186)
T d1gkya_           3 PIVISGPS---GTGKSTLLKKLFAEYPDSFGFSVSSTTRT   39 (186)
T ss_dssp             CEEEECCT---TSSHHHHHHHHHHHCTTTEEECCEEECSC
T ss_pred             EEEEECCC---CCCHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             69998999---99989999999974886624777642689


No 229
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=29.04  E-value=14  Score=14.32  Aligned_cols=19  Identities=11%  Similarity=-0.066  Sum_probs=7.4

Q ss_pred             HHHHHCCCCCCEEEECCCC
Q ss_conf             5664102457479971832
Q gi|254780401|r  126 GVQMLLQEGVDIIIMDDGF  144 (338)
Q Consensus       126 ~~~~~~~~~~diiIlDDGf  144 (338)
                      ..+...+-..+|++.=|.|
T Consensus        73 ~l~~F~~G~~~vLVaT~v~   91 (174)
T d1c4oa2          73 LIRDLRLGHYDCLVGINLL   91 (174)
T ss_dssp             HHHHHHTTSCSEEEESCCC
T ss_pred             HHHHHHCCCEEEEEEEEEE
T ss_conf             9999977986999963564


No 230
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.89  E-value=15  Score=14.30  Aligned_cols=29  Identities=14%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +.+||||-  +=.+|++.|.++|+.+-|+++
T Consensus         6 lItGatG~--iG~~lv~~L~~~~~~~~v~~~   34 (212)
T d2a35a1           6 LLAGATGL--TGEHLLDRILSEPTLAKVIAP   34 (212)
T ss_dssp             EEECTTSH--HHHHHHHHHHHCTTCCEEECC
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEEE
T ss_conf             99889848--999999999968895799997


No 231
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
Probab=28.87  E-value=15  Score=14.30  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             CCEEEEEECCCCH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8638987415535-------789998874010000122143323489899999999756
Q gi|254780401|r  222 GKKVLAFSGIADT-------EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQ  273 (338)
Q Consensus       222 ~k~v~afsGIa~P-------~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~  273 (338)
                      ...+..+.|-.||       +.+.+.|++.|+++ ....||.-|.++..+++.+.+-.+
T Consensus       142 ~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~-~~~~~~ggH~~~~~~~~~~~~wl~  199 (202)
T d2h1ia1         142 GKSVFIAAGTNDPICSSAESEELKVLLENANANV-TMHWENRGHQLTMGEVEKAKEWYD  199 (202)
T ss_dssp             TCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEE-EEEEESSTTSCCHHHHHHHHHHHH
T ss_pred             CCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             2011124436888549999999999999789987-999989999689999999999999


No 232
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}
Probab=28.82  E-value=15  Score=14.30  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||||  =+=-+|++.|.++|+.+.++.+
T Consensus         6 lITG~tG--fiG~~l~~~L~~~g~~vi~~~~   34 (315)
T d1e6ua_           6 FIAGHRG--MVGSAIRRQLEQRGDVELVLRT   34 (315)
T ss_dssp             EEETTTS--HHHHHHHHHHTTCTTEEEECCC
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEECC
T ss_conf             9985872--8999999999978498999657


No 233
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=28.37  E-value=12  Score=14.91  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=13.4

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      -|.++.+-.+|...+.+..+|+||+|
T Consensus        28 ~v~~a~~~~~al~~l~~~~~dlillD   53 (121)
T d1mvoa_          28 DVITASDGEEALKKAETEKPDLIVLD   53 (121)
T ss_dssp             EEEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf             99998788999998743566589731


No 234
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}
Probab=28.18  E-value=10  Score=15.33  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=20.2

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             898899823000788874899999999852
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVID   72 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~   72 (338)
                      ..|+|.|    .||||=||+.-.|-..+..
T Consensus         3 ~~plllI----a~GtGIaP~~s~l~~~~~~   28 (154)
T d1jb9a2           3 NATHIMI----ATGTGVAPFRGYLRRMFME   28 (154)
T ss_dssp             TCEEEEE----EEGGGGHHHHHHHHHHHTE
T ss_pred             CCCEEEE----ECCEEHHHHHHHHHHHHHH
T ss_conf             9989999----8233499999999999985


No 235
>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}
Probab=28.15  E-value=15  Score=14.22  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=22.6

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             007888748999999998524731598760
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .+||||  =+=..+|+.|.+.|.+|.+++|
T Consensus        30 ITGas~--GIG~aiA~~la~~Ga~Vii~~r   57 (294)
T d1w6ua_          30 ITGGGT--GLGKGMTTLLSSLGAQCVIASR   57 (294)
T ss_dssp             EETTTS--HHHHHHHHHHHHTTCEEEEEES
T ss_pred             EECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             928888--8999999999986998999979


No 236
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}
Probab=28.14  E-value=7.5  Score=16.35  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             889982300078887489999999985247315987
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ++|+|    +||||=||+.-.+-..+.....+...+
T Consensus         9 ~lvlI----agGtGIaP~~sil~~~~~~~~~~~~~l   40 (158)
T d1a8pa2           9 HLYML----STGTGLAPFMSLIQDPEVYERFEKVVL   40 (158)
T ss_dssp             EEEEE----EEGGGGHHHHHHTTCHHHHHHCSEEEE
T ss_pred             CEEEE----ECHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             79999----855529999999999998099883466


No 237
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=27.81  E-value=12  Score=14.93  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=18.0

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             988998230007888748999999998
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      +.||-+|   .-|+|||-.+..||+.+
T Consensus         4 ~riil~G---~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAVLLG---PPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEEEEC---CTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEC---CCCCCHHHHHHHHHHHH
T ss_conf             3899989---99998899999999986


No 238
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]}
Probab=27.76  E-value=15  Score=14.17  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             98899823000788874899999999852473159876045
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      |-.||.||.     +-+||+.++++.+...  ++-+-|-|-
T Consensus         5 vlFvC~~N~-----cRS~mAEa~~~~~~~~--~~~v~SAG~   38 (130)
T d1jf8a_           5 IYFISTGNS-----ARSQMAEGWGKEILGE--GWNVYSAGI   38 (130)
T ss_dssp             EEEEESSSS-----SHHHHHHHHHHHHSTT--TEEEEEEES
T ss_pred             EEEEECCCC-----HHHHHHHHHHHHCCCC--CCEECCCCC
T ss_conf             999929981-----7989999999960776--605504342


No 239
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=27.76  E-value=12  Score=14.92  Aligned_cols=17  Identities=24%  Similarity=0.343  Sum_probs=13.9

Q ss_pred             ECCCCCCHHHHHHHHHH
Q ss_conf             07888748999999998
Q gi|254780401|r   54 MGGTGKTPTALAIAKAV   70 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l   70 (338)
                      .-|+|||-.+..|++.+
T Consensus        14 ~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_          14 GPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             STTSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             99998899999999997


No 240
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.73  E-value=11  Score=15.08  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             1553578999887401000012214332348989999999975
Q gi|254780401|r  230 GIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQA  272 (338)
Q Consensus       230 GIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a  272 (338)
                      +++ ++-..+++.+.|---+....-..+|.|+..|++.|++.|
T Consensus        20 ~l~-~~El~~~~~e~g~iev~C~fC~~~Y~f~~~dl~~l~~~a   61 (62)
T d1xjha_          20 TLP-DEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEIRNNA   61 (62)
T ss_dssp             TSC-HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHTTTC
T ss_pred             HCC-HHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHC
T ss_conf             369-999999996289789982387998888999999999845


No 241
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=27.71  E-value=10  Score=15.41  Aligned_cols=25  Identities=12%  Similarity=0.290  Sum_probs=17.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.|-.+|...+.+..+|+||+|
T Consensus        32 v~~a~~g~~al~~~~~~~pDlvllD   56 (140)
T d1a2oa1          32 VATAPDPLVARDLIKKFNPDVLTLD   56 (140)
T ss_dssp             EEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf             9997999999999984598999975


No 242
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=27.69  E-value=15  Score=14.16  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4899999999852473159876
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~ils   81 (338)
                      -|-++.+++.|+++|++++++|
T Consensus        38 ~p~v~~~l~~l~~~G~~Iii~T   59 (149)
T d1ltqa1          38 NPMVVELSKMYALMGYQIVVVS   59 (149)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8789999999984448089992


No 243
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.62  E-value=15  Score=14.15  Aligned_cols=19  Identities=5%  Similarity=0.090  Sum_probs=11.8

Q ss_pred             CHHHHHHHHCCCCCCEEEE
Q ss_conf             0122566410245747997
Q gi|254780401|r  122 DRKIGVQMLLQEGVDIIIM  140 (338)
Q Consensus       122 ~R~~~~~~~~~~~~diiIl  140 (338)
                      +=..+++++.+.+..+|.+
T Consensus       125 nvi~a~~~Ak~~g~~~i~l  143 (194)
T d1x92a_         125 NVIQAIQAAHDREMLVVAL  143 (194)
T ss_dssp             HHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEE
T ss_conf             3579999987538469999


No 244
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=27.55  E-value=15  Score=14.14  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             86389874155357899988740100001221433234898999999997564
Q gi|254780401|r  222 GKKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQ  274 (338)
Q Consensus       222 ~k~v~afsGIa~P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~  274 (338)
                      ..+++++||-++++...+.++. |+.  ..+.    -+|+..++....++|.+
T Consensus        75 ~~~iI~lt~~~~~~~~~~a~~~-Ga~--~yl~----KP~~~~~L~~~i~~a~e  120 (123)
T d1dbwa_          75 NIPSIVITGHGDVPMAVEAMKA-GAV--DFIE----KPFEDTVIIEAIERASE  120 (123)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHT-TCS--EEEE----SSCCHHHHHHHHHHHHT
T ss_pred             CCEEEEEEEECCHHHHHHHHHC-CCC--EEEE----CCCCHHHHHHHHHHHHH
T ss_conf             8759999836899999999987-998--8998----97999999999999998


No 245
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.48  E-value=15  Score=14.14  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=22.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             8988998230007888748999999998524731598760
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      .+.||..++...|.        +..+.|-+.|-.|.=|-+
T Consensus         6 girVld~~~~~agp--------~~~~~lad~GA~VikvE~   37 (359)
T d1x74a1           6 GLRVVELAGIGPGP--------HAAMILGDLGADVVRIDR   37 (359)
T ss_dssp             TCEEEEECCSTHHH--------HHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEECCCCHHHH--------HHHHHHHHHCCEEEEECC
T ss_conf             98999827830899--------999999983997999899


No 246
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=27.38  E-value=12  Score=14.85  Aligned_cols=16  Identities=25%  Similarity=0.127  Sum_probs=13.6

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      =|+|||-.+..|++.+
T Consensus         9 pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           9 PVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9999899999999986


No 247
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=27.09  E-value=12  Score=15.00  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=16.7

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHH
Q ss_conf             89982300078887489999999985
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~   71 (338)
                      |+-+|-   =|||||-++..+++.|-
T Consensus        31 vLl~G~---pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          31 VLVFGD---RGTGKSTAVRALAALLP   53 (333)
T ss_dssp             EEEECC---GGGCTTHHHHHHHHHSC
T ss_pred             EEEECC---CCCCHHHHHHHHHHHCC
T ss_conf             899889---98529999999987379


No 248
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.86  E-value=13  Score=14.74  Aligned_cols=16  Identities=25%  Similarity=0.353  Sum_probs=14.3

Q ss_pred             CCCCCCHHHHHHHHHH
Q ss_conf             7888748999999998
Q gi|254780401|r   55 GGTGKTPTALAIAKAV   70 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l   70 (338)
                      -|+|||-.+..|++.+
T Consensus        10 pGSGKsT~a~~La~~~   25 (194)
T d1teva_          10 PGAGKGTQCARIVEKY   25 (194)
T ss_dssp             TTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             9999899999999986


No 249
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=26.68  E-value=13  Score=14.54  Aligned_cols=18  Identities=17%  Similarity=0.099  Sum_probs=14.2

Q ss_pred             ECCCCCCHHHHHHHHHHH
Q ss_conf             078887489999999985
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVI   71 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~   71 (338)
                      -.|+|||-++..+++.+.
T Consensus        37 ~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          37 LRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             STTSSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             999829999999999779


No 250
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}
Probab=26.60  E-value=16  Score=14.03  Aligned_cols=20  Identities=45%  Similarity=0.742  Sum_probs=14.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHH
Q ss_conf             88998230007888748999999
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .|+.||+   .|+|||-++..++
T Consensus         6 KivlvG~---~~vGKTsli~~~~   25 (168)
T d1u8za_           6 KVIMVGS---GGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECS---TTSSHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHH
T ss_conf             9999998---9958899999997


No 251
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=26.36  E-value=16  Score=14.00  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+||||  -+=-+|++.|.+.|+.+.+..+
T Consensus         4 LItG~tG--fIGs~l~~~L~~~g~~vv~~~d   32 (361)
T d1kewa_           4 LITGGAG--FIGSAVVRHIIKNTQDTVVNID   32 (361)
T ss_dssp             EEESTTS--HHHHHHHHHHHHHCSCEEEEEE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9988876--7999999999977997899984


No 252
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.05  E-value=9.9  Score=15.49  Aligned_cols=28  Identities=11%  Similarity=0.223  Sum_probs=17.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             7888748999999998524731598760
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      -|+|||.+...|++.+....+.+...+|
T Consensus        11 sG~GK~tl~~~L~~~~~~~~~~~~~tTR   38 (182)
T d1znwa1          11 SAVGKSTVVRCLRERIPNLHFSVSATTR   38 (182)
T ss_dssp             TTSSHHHHHHHHHHHSTTCEECCCEESS
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9999999999998458997179886046


No 253
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=26.03  E-value=9.7  Score=15.54  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=11.9

Q ss_pred             CCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             5201225664102457479971
Q gi|254780401|r  120 TSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       120 ~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      +.+-.++.+.+.+..+|++|+|
T Consensus        34 a~~~~~al~~~~~~~~DlvllD   55 (138)
T d1a04a2          34 ASNGEQGIELAESLDPDLILLD   55 (138)
T ss_dssp             ESSHHHHHHHHHHHCCSEEEEE
T ss_pred             ECCHHHHHHHHHHCCCCEEEEE
T ss_conf             7999999999985699799986


No 254
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.81  E-value=15  Score=14.12  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=11.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |.++.+-.+|...+.+..+|+||+|
T Consensus        28 v~~a~~~~~al~~l~~~~~dlillD   52 (122)
T d1kgsa2          28 VDVCYDGEEGMYMALNEPFDVVILD   52 (122)
T ss_dssp             EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCC
T ss_conf             9997566999999986276522001


No 255
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Probab=25.73  E-value=13  Score=14.66  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=23.0

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             8998230007888748999999998524731598760457
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYG   85 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg   85 (338)
                      ||.||.=+.        =.-+|..|.+.|++|.+|=+|..
T Consensus         7 viIVGsG~a--------G~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           7 VVIVGSGPI--------GCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEECCSHH--------HHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEECCCHH--------HHHHHHHHHHCCCEEEEEECCCC
T ss_conf             899896889--------99999999658893999936899


No 256
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.66  E-value=14  Score=14.49  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=17.0

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             78887489999999985247315987604
Q gi|254780401|r   55 GGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        55 GGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      -|+|||-.+..||+.|     ...-+|=|
T Consensus        12 ~GsGKgT~ak~La~~l-----g~~~istG   35 (223)
T d1q3ta_          12 ASSGKSTVAKIIAKDF-----GFTYLDTG   35 (223)
T ss_dssp             SCSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred             CCCCHHHHHHHHHHHH-----CCCEECHH
T ss_conf             9879899999999996-----99478779


No 257
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}
Probab=25.65  E-value=5.1  Score=17.51  Aligned_cols=36  Identities=17%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             3889889982300078887489999999985247315987604
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      +-.|-.||.||+     .-.||+.++.+.+...  +.-+.|.|
T Consensus         4 k~~VLFVC~gN~-----cRSpmAEai~~~~~~~--~~~v~SAg   39 (146)
T d1p8aa_           4 KKAVLFVCLGNI-----CRSPACEGICRDMVGD--KLIIDSAA   39 (146)
T ss_dssp             CCCEEEESSSSC-----SSSTTHHHHHHHHHSS--CSSCEEEC
T ss_pred             CCEEEEEECCCH-----HHHHHHHHHHHHHCCC--CCEEEEEE
T ss_conf             998999979768-----9999999999986668--71377677


No 258
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.59  E-value=17  Score=13.90  Aligned_cols=50  Identities=20%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHC
Q ss_conf             0788874899999999852473159876045787777558714567887704212332205
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR  114 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~  114 (338)
                      -=|||||-.  |+.-.++....         .......+.+.+...-+.++-++-..+...
T Consensus        57 ~TGsGKTla--yllp~l~~i~~---------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~  106 (218)
T d2g9na1          57 QSGTGKTAT--FAISILQQIEL---------DLKATQALVLAPTRELAQQIQKVVMALGDY  106 (218)
T ss_dssp             CTTSSHHHH--HHHHHHHHCCT---------TCCSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHH--HHHHHHHEECC---------CCCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             562544554--33102220003---------666751899824511235677777651244


No 259
>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}
Probab=25.18  E-value=17  Score=13.85  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=26.4

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      ||=.|+|-+.|-+|     .+||+.+..+|..|.+++
T Consensus        22 ~VR~ItN~SSGk~G-----~aiA~~~~~~Ga~V~li~   53 (223)
T d1u7za_          22 PVRYISDHSSGKMG-----FAIAAAAARRGANVTLVS   53 (223)
T ss_dssp             SSEEEEECCCSHHH-----HHHHHHHHHTTCEEEEEE
T ss_pred             CCCEECCCCCHHHH-----HHHHHHHHHCCCCHHHHH
T ss_conf             82352627937999-----999999998698243241


No 260
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.00  E-value=14  Score=14.35  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=16.8

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             88998230007888748999999998
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      .||.+|-   =|+|||-.+..|++.+
T Consensus         4 rIvl~G~---pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGP---PGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECC---TTSSHHHHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHHHHH
T ss_conf             9999899---9999899999999996


No 261
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.79  E-value=17  Score=13.80  Aligned_cols=24  Identities=21%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             887489999999985247315987
Q gi|254780401|r   57 TGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        57 tGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ||-|.+--.||..|..+|.+|--.
T Consensus         1 tG~T~~k~~La~~~~~Rgl~v~~~   24 (105)
T d1u1ia2           1 TGETLVKTTLAPMFAYRNMEVVGW   24 (105)
T ss_dssp             CSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             984209999999999859960489


No 262
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=24.48  E-value=17  Score=13.76  Aligned_cols=18  Identities=0%  Similarity=-0.232  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHCCCCEEEE
Q ss_conf             999999985247315987
Q gi|254780401|r   63 ALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        63 v~~l~~~l~~~g~~~~il   80 (338)
                      +....+.++++|.+..=+
T Consensus        44 ~~~~l~~~~~~G~N~vRv   61 (350)
T d2c0ha1          44 FESTLSDMQSHGGNSVRV   61 (350)
T ss_dssp             HHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEE
T ss_conf             999999999769988998


No 263
>d1vkoa2 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=24.45  E-value=17  Score=13.76  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             887489999999985247315987
Q gi|254780401|r   57 TGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        57 tGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ||-|.+--.||..|..+|.+|--.
T Consensus         1 tGqT~~k~~La~~~~~Rglkv~~~   24 (114)
T d1vkoa2           1 SGQTKFKSAFVDFLVSSGMKPESI   24 (114)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             985128999999999769960379


No 264
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate isomerase Ypr118W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.22  E-value=13  Score=14.57  Aligned_cols=64  Identities=16%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             CCCCCCCCCH--HHHH----HHHCCCCCCEEEECCCCCCCCCCC---EEEEEEECCCCCCCCCCCC-CCHHHHH
Q ss_conf             5763465201--2256----641024574799718322344123---0699996184335665537-6136521
Q gi|254780401|r  114 RAVTIVTSDR--KIGV----QMLLQEGVDIIIMDDGFHSADLQA---DFSLIVVNSHRGLGNGLVF-PAGPLRV  177 (338)
Q Consensus       114 ~~pv~V~~~R--~~~~----~~~~~~~~diiIlDDGfQh~~l~r---dl~Ivl~d~~~~~gn~~ll-PaGpLRE  177 (338)
                      ++-|+|...|  .+|+    +.+.+.+.++.+.-|..=-+-+.+   |++-|++-+.+-.-||.++ ..|..--
T Consensus       215 ~f~V~v~EsRP~~qG~rl~a~~L~~~gI~~t~i~dsa~~~~m~~~~~~vd~V~vGAd~i~~nG~v~nkiGT~~~  288 (402)
T g1w2w.1         215 MGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQL  288 (402)
T ss_dssp             EEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHH
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECCCEECCCCCEEEHHHHHHH
T ss_conf             47999957887442178888999865877089740568999863475643699713233068877666878889


No 265
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=24.09  E-value=15  Score=14.13  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=12.3

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             63465201225664102457479971
Q gi|254780401|r  116 VTIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       116 pv~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      -|.++.+-.+|...+.+..+|+|++|
T Consensus        27 ~v~~a~~~~eal~~~~~~~~dlil~D   52 (139)
T d1w25a1          27 EVSTAMDGPTALAMAARDLPDIILLD   52 (139)
T ss_dssp             EEEEESSHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEEECCCHHHHHHHHCCCCEEEEEE
T ss_conf             99997463254554313541022110


No 266
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=24.04  E-value=12  Score=14.86  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=16.0

Q ss_pred             EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf             8998230007888748999999998
Q gi|254780401|r   46 VICVGGFVMGGTGKTPTALAIAKAV   70 (338)
Q Consensus        46 VI~VGNitvGGtGKTP~v~~l~~~l   70 (338)
                      ||.+|-   =|+|||-.+..|++.+
T Consensus         9 IiliG~---PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           9 AAIMGA---PGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEECC---TTSSHHHHHHHHHHHB
T ss_pred             EEEECC---CCCCHHHHHHHHHHHH
T ss_conf             999889---9998799999999997


No 267
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.04  E-value=18  Score=13.71  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=27.4

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHH-CC--CCEEEEEECC
Q ss_conf             898899823000788874899999999852-47--3159876045
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVID-KN--LKPGFLSRGY   84 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~-~g--~~~~ilsRGY   84 (338)
                      .|-.+|.||+     .-.||+.++.+.+.. +|  -...+-|.|=
T Consensus         7 ~ILFVCtgN~-----cRSpmAEal~~~~~~~~~l~~~~~v~SaG~   46 (157)
T d1dg9a_           7 SVLFVCLGNI-----CRSPIAEAVFRKLVTDQNISDNWVIDSGAV   46 (157)
T ss_dssp             EEEEEESSSS-----SHHHHHHHHHHHHHHHTTCGGGEEEEEEES
T ss_pred             EEEEEECCCH-----HHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             6999959828-----799999999999998668886634740133


No 268
>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}
Probab=24.00  E-value=18  Score=13.70  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+|++|-.=+=..+|+.|.+.|.+|++..|
T Consensus        12 lITGas~~~GIG~aiA~~la~~Ga~V~i~~~   42 (256)
T d1ulua_          12 LVMGVTNQRSLGFAIAAKLKEAGAEVALSYQ   42 (256)
T ss_dssp             EEESCCCSSSHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9979999866999999999987999999817


No 269
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}
Probab=23.92  E-value=9.3  Score=15.70  Aligned_cols=11  Identities=18%  Similarity=0.456  Sum_probs=5.0

Q ss_pred             EEECCEEECCC
Q ss_conf             99823000788
Q gi|254780401|r   47 ICVGGFVMGGT   57 (338)
Q Consensus        47 I~VGNitvGGt   57 (338)
                      |.+||--+=|+
T Consensus         6 iIaaNWKMN~s   16 (249)
T d1kv5a_           6 IAAANWKCNGS   16 (249)
T ss_dssp             EEEEECCBCCC
T ss_pred             EEEEECCCCCC
T ss_conf             89986021879


No 270
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.70  E-value=16  Score=13.95  Aligned_cols=20  Identities=20%  Similarity=0.426  Sum_probs=14.3

Q ss_pred             CEEEECCEEECCCCCCHHHHHHH
Q ss_conf             88998230007888748999999
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .|+.||   -.|+|||-++..++
T Consensus         4 Ki~vvG---~~~vGKTSli~~l~   23 (166)
T d1g16a_           4 KILLIG---DSGVGKSCLLVRFV   23 (166)
T ss_dssp             EEEEEE---STTSSHHHHHHHHH
T ss_pred             EEEEEC---CCCCCHHHHHHHHH
T ss_conf             999999---99967899999998


No 271
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.46  E-value=17  Score=13.90  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=15.7

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             9889982300078887489999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      +.|+.||+-   |+|||-++..+.+
T Consensus         4 iKvvllG~~---~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDG---AVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEST---TSSHHHHHHHHHH
T ss_pred             EEEEEECCC---CCCHHHHHHHHHH
T ss_conf             699999999---9699999999971


No 272
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=23.45  E-value=18  Score=13.63  Aligned_cols=39  Identities=5%  Similarity=0.089  Sum_probs=30.1

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8898899823000788874899999999852473159876045787
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .|.|.+-|       .|+.|+..+..+.|.+.|.+-.++--||...
T Consensus        32 ~PK~llpv-------~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~   70 (307)
T d1yp2a2          32 RAKPAVPL-------GANYRLIDIPVSNCLNSNISKIYVLTQFNSA   70 (307)
T ss_dssp             SCGGGCEE-------TTTEETTHHHHHHHHHTTCCEEEEEESCCCH
T ss_pred             CCCCEEEE-------CCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             97444797-------9998799999999998699889999035520


No 273
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=23.37  E-value=16  Score=14.11  Aligned_cols=25  Identities=12%  Similarity=0.298  Sum_probs=11.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |.++.+-.+|...+.+..+|+||+|
T Consensus        27 v~~a~~~~eAl~~l~~~~~dlvilD   51 (137)
T d1ny5a1          27 VESAERGKEAYKLLSEKHFNVVLLD   51 (137)
T ss_dssp             EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHCCCCCCCHHH
T ss_conf             9998889999987302555530177


No 274
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.18  E-value=17  Score=13.76  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=15.2

Q ss_pred             CCEEEECCEEECCCCCCHHHHHHH
Q ss_conf             988998230007888748999999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      +.|+.||   -.|+|||-++-.+.
T Consensus         8 iKi~vvG---~~~vGKTsli~~l~   28 (177)
T d1x3sa1           8 LKILIIG---ESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEEEEC---STTSSHHHHHHHHH
T ss_pred             EEEEEEC---CCCCCHHHHHHHHH
T ss_conf             2899999---89908899999997


No 275
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=22.97  E-value=14  Score=14.33  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=15.5

Q ss_pred             ECCEEE---CCCCCCHHHHHHHHHH
Q ss_conf             823000---7888748999999998
Q gi|254780401|r   49 VGGFVM---GGTGKTPTALAIAKAV   70 (338)
Q Consensus        49 VGNitv---GGtGKTP~v~~l~~~l   70 (338)
                      .+|+-.   -|+|||=++..||+.+
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             7532441899863789999998644


No 276
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.95  E-value=18  Score=13.57  Aligned_cols=13  Identities=31%  Similarity=0.521  Sum_probs=7.7

Q ss_pred             CCCEEEECCCCCC
Q ss_conf             5747997183223
Q gi|254780401|r  134 GVDIIIMDDGFHS  146 (338)
Q Consensus       134 ~~diiIlDDGfQh  146 (338)
                      +.+.|++|||.|-
T Consensus        54 G~~~v~iDDGW~~   66 (293)
T d1ktba2          54 GYKYINIDDCWAA   66 (293)
T ss_dssp             TCCEEECCSSCBC
T ss_pred             CCEEEEECCCCCC
T ss_conf             9779998289768


No 277
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=22.89  E-value=19  Score=13.56  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf             0007888748999999998524731-5987
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLK-PGFL   80 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~-~~il   80 (338)
                      |.+||||  -+=.+|++.|.++|+. +.++
T Consensus         3 LITGgsG--fIGs~lv~~L~~~g~~~V~~~   30 (307)
T d1eq2a_           3 IVTGGAG--FIGSNIVKALNDKGITDILVV   30 (307)
T ss_dssp             EEETTTS--HHHHHHHHHHHTTTCCCEEEE
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEE
T ss_conf             9954853--999999999996799759999


No 278
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=22.66  E-value=19  Score=13.53  Aligned_cols=32  Identities=34%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      |--|+.||-=   |+|||=++..||+.+   + -|-+.+
T Consensus        49 ksNILliGPT---GvGKTlLAr~LAk~l---~-VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPT---GVGKTEIARRLAKLA---N-APFIKV   80 (443)
T ss_dssp             CCCEEEECCT---TSSHHHHHHHHHHHT---T-CCEEEE
T ss_pred             CCCEEEECCC---CCCHHHHHHHHHHHH---C-CCEEEE
T ss_conf             5647998999---988999999999873---8-988986


No 279
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.32  E-value=19  Score=13.48  Aligned_cols=42  Identities=19%  Similarity=0.457  Sum_probs=26.9

Q ss_pred             CCCCCEEEEC--------CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             3889889982--------300078887489999999985247315987604
Q gi|254780401|r   41 HAPIPVICVG--------GFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        41 ~~~~pVI~VG--------NitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .+++-+|.|-        ..++- +.|=|=-..++++++++|.++++-.-.
T Consensus        34 ~~g~~~i~iDdgW~~~~gd~~~d-~~~FPglk~l~~~~h~~G~k~gl~~~p   83 (348)
T d1zy9a2          34 NFPFEVFQIDDAYEKDIGDWLVT-RGDFPSVEEMAKVIAENGFIPGIWTAP   83 (348)
T ss_dssp             GTTCSEEEECTTSEEETTEEEEE-CTTCCCHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCCCCEEEECCCCCCCCCCCEEC-CCCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf             48985899895633589871279-000869899999998669878998630


No 280
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.15  E-value=19  Score=13.46  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=12.9

Q ss_pred             CHHHHHHHHHHHHCCCCEEEE
Q ss_conf             489999999985247315987
Q gi|254780401|r   60 TPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        60 TP~v~~l~~~l~~~g~~~~il   80 (338)
                      .-.+.+|+..|...|+++..+
T Consensus        42 ~~~~~~l~~~L~~~g~~~~~~   62 (171)
T d1s2ma2          42 TNRVELLAKKITDLGYSCYYS   62 (171)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEHHHHHHHHHHCCCCCCCCC
T ss_conf             413567677650133443334


No 281
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.15  E-value=15  Score=14.18  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=14.3

Q ss_pred             CCEEEECCEEECCCCCCHHHHHH
Q ss_conf             98899823000788874899999
Q gi|254780401|r   44 IPVICVGGFVMGGTGKTPTALAI   66 (338)
Q Consensus        44 ~pVI~VGNitvGGtGKTP~v~~l   66 (338)
                      +.|+.||+   .|+|||-+.-.+
T Consensus         6 ~Ki~ivG~---~~vGKTsLi~~l   25 (186)
T d2f7sa1           6 IKLLALGD---SGVGKTTFLYRY   25 (186)
T ss_dssp             EEEEEESC---TTSSHHHHHHHH
T ss_pred             EEEEEECC---CCCCHHHHHHHH
T ss_conf             89999999---991989999999


No 282
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=22.03  E-value=19  Score=13.44  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=20.3

Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             07888748999999998524731598760
Q gi|254780401|r   54 MGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        54 vGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      +||+|.  +=.++++.|++.|+.+.+..|
T Consensus        15 IGg~G~--mG~~la~~L~~~G~~V~~~d~   41 (152)
T d2pv7a2          15 VGGYGK--LGGLFARYLRASGYPISILDR   41 (152)
T ss_dssp             ETTTSH--HHHHHHHHHHTTTCCEEEECT
T ss_pred             ECCCCH--HHHHHHHHHHHCCCCCEECCC
T ss_conf             968897--899999999976997385133


No 283
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=21.96  E-value=19  Score=13.43  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=26.3

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             898899823000788874899999999852473159876
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .+-+||.|+.       ++.++..++.|++.|+++.++.
T Consensus        17 dvtiis~G~~-------~~~al~aa~~L~~~gi~~~vid   48 (137)
T d1umdb2          17 DLTLICYGTV-------MPEVLQAAAELAKAGVSAEVLD   48 (137)
T ss_dssp             SEEEEECGGG-------HHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCHH-------HHHHHHHHHCCCCCCCCEEEEE
T ss_conf             7999974633-------3201233200123685158875


No 284
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=21.95  E-value=17  Score=13.79  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEECC
Q ss_conf             9999999852473159876045
Q gi|254780401|r   63 ALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        63 v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      =..+|..|.+.|++|.+|=||-
T Consensus        14 G~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1          14 GIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             HHHHHHHHHHTTCCEEEECSSC
T ss_pred             HHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999999801879699998168


No 285
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=21.82  E-value=19  Score=13.41  Aligned_cols=29  Identities=31%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCC-EEEEEE
Q ss_conf             0007888748999999998524731-598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLK-PGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~-~~ilsR   82 (338)
                      |.+||+|  =+-..+++.|.++|.+ +++++|
T Consensus        13 lVTGgs~--GIG~a~a~~la~~Ga~~vvl~~R   42 (259)
T d2fr1a1          13 LVTGGTG--GVGGQIARWLARRGAPHLLLVSR   42 (259)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHTCSEEEEEES
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9989876--89999999999879988999708


No 286
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.71  E-value=18  Score=13.69  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=15.9

Q ss_pred             CCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf             89889982300078887489999999
Q gi|254780401|r   43 PIPVICVGGFVMGGTGKTPTALAIAK   68 (338)
Q Consensus        43 ~~pVI~VGNitvGGtGKTP~v~~l~~   68 (338)
                      .+.|+.||+   .|.|||-++..+.+
T Consensus         2 ~~KivliG~---~~vGKTsli~r~~~   24 (179)
T d1m7ba_           2 KCKIVVVGD---SQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEEES---TTSSHHHHHHHHHH
T ss_pred             CEEEEEECC---CCCCHHHHHHHHHH
T ss_conf             669999999---99598999999972


No 287
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.23  E-value=20  Score=13.33  Aligned_cols=20  Identities=10%  Similarity=0.087  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899999999852473159876
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ils   81 (338)
                      +.-.+|++ |.++|+...|++
T Consensus        78 ~~H~~L~~-L~~~g~~~~iiT   97 (249)
T d1m2ka_          78 KAHQAFAE-LERLGVLKCLIT   97 (249)
T ss_dssp             HHHHHHHH-HHHTTCEEEEEE
T ss_pred             CHHHHHHH-HHHCCCCEEEEE
T ss_conf             16699999-987298617886


No 288
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.21  E-value=20  Score=13.33  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=14.8

Q ss_pred             CEEEECCEEECCCCCCHHHHHHH
Q ss_conf             88998230007888748999999
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIA   67 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~   67 (338)
                      .|+.||.   .|+|||-++..+.
T Consensus         4 Ki~~vG~---~~vGKSsLi~~~~   23 (175)
T d1ky3a_           4 KVIILGD---SGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEEECC---TTSSHHHHHHHHH
T ss_pred             EEEEECC---CCCCHHHHHHHHH
T ss_conf             9999999---9969899999997


No 289
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=21.20  E-value=20  Score=13.33  Aligned_cols=50  Identities=10%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             57899988740100001221433234898999999997564798799854
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTA  283 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTE  283 (338)
                      ...|-...+.+|++..........-.-|.+++.++.+.+++.+...|-+|
T Consensus       182 H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e  231 (286)
T d1psza_         182 EGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVE  231 (286)
T ss_dssp             ECCCHHHHHHHTCCEEEEESSTTSCSSCHHHHHHHHHHHHTSCCCCEEEE
T ss_pred             CCHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             44036677744874201021056334571689999999883782599990


No 290
>d1p1ja2 d.81.1.3 (A:323-437) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.13  E-value=20  Score=13.32  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             887489999999985247315987
Q gi|254780401|r   57 TGKTPTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        57 tGKTP~v~~l~~~l~~~g~~~~il   80 (338)
                      ||-|.+--.||..|..+|.+|--.
T Consensus         1 tGqT~~ks~La~~l~~Rglkv~~~   24 (115)
T d1p1ja2           1 SGQTKLKSVLAQFLVDAGIKPVSI   24 (115)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             995118999999999769960379


No 291
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=20.99  E-value=19  Score=13.42  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=11.2

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.+=.+|...+.+..+|+||+|
T Consensus        28 v~~a~~~~~al~~~~~~~~dlil~D   52 (123)
T d1mb3a_          28 TLQTREGLSALSIARENKPDLILMD   52 (123)
T ss_dssp             EEEESCHHHHHHHHHHHCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             9997888999999981798889987


No 292
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=20.95  E-value=20  Score=13.29  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0007888748999999998524731598760
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFLSR   82 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~ilsR   82 (338)
                      |.+|||+  -+=..+|+.|.++|.+|.+.+|
T Consensus         5 lITGas~--GIG~aiA~~la~~Ga~V~i~~~   33 (241)
T d1uaya_           5 LVTGGAS--GLGRAAALALKARGYRVVVLDL   33 (241)
T ss_dssp             EEETTTS--HHHHHHHHHHHHHTCEEEEEES
T ss_pred             EEECCCC--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9928988--8999999999987998999978


No 293
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.92  E-value=20  Score=13.29  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=15.5

Q ss_pred             CCEEEECCEEECC--CCCCHHHHHHHHH
Q ss_conf             9889982300078--8874899999999
Q gi|254780401|r   44 IPVICVGGFVMGG--TGKTPTALAIAKA   69 (338)
Q Consensus        44 ~pVI~VGNitvGG--tGKTP~v~~l~~~   69 (338)
                      -|||||    +|.  +|||-++-.|...
T Consensus         5 ~p~IaI----iGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SPIVSV----LGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCEEEE----ECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEE----EECCCCCHHHHHHHHHHH
T ss_conf             987999----969985499999999823


No 294
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=20.90  E-value=20  Score=13.28  Aligned_cols=20  Identities=10%  Similarity=0.137  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEE
Q ss_conf             89999999985247315987
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFL   80 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~il   80 (338)
                      +++.+++..|...|+.+..+
T Consensus        50 ~~a~~~~~~l~~lg~~~~~~   69 (186)
T d1m3sa_          50 LMAKSFAMRLMHMGFNAHIV   69 (186)
T ss_dssp             HHHHHHHHHHHHTTCCEEET
T ss_pred             HHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999987356777767


No 295
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=20.88  E-value=20  Score=13.28  Aligned_cols=93  Identities=12%  Similarity=0.045  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf             89999999985247315987604578777755871456788770421233220576346520122566410245747997
Q gi|254780401|r   61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIM  140 (338)
Q Consensus        61 P~v~~l~~~l~~~g~~~~ilsRGYg~~~~~~~~v~~~~~~~~~vGDEp~lla~~~pv~V~~~R~~~~~~~~~~~~diiIl  140 (338)
                      +.+.+++..|...|+....++...-...              +-||=-..++..+   -.++=.+.++.+.+.++.+|..
T Consensus        50 ~~a~~~~~~l~~lg~~~~~~~~~~~~~~--------------~~~Dl~I~iS~sG---~t~~~i~~~~~ak~~g~~vI~I  112 (177)
T d1jeoa_          50 YIGRCFAMRLMHLGFKSYFVGETTTPSY--------------EKDDLLILISGSG---RTESVLTVAKKAKNINNNIIAI  112 (177)
T ss_dssp             HHHHHHHHHHHHTTCCEEETTSTTCCCC--------------CTTCEEEEEESSS---CCHHHHHHHHHHHTTCSCEEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCC--------------CCCCEEEEECCCC---CHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999965974201333234556--------------7777688713330---2689999999998759943677


Q ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHH
Q ss_conf             18322344123069999618433566553761365
Q gi|254780401|r  141 DDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPL  175 (338)
Q Consensus       141 DDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpL  175 (338)
                      =. ..+ .+.+--|+++.-   +.+.....|.|+.
T Consensus       113 T~-~~~-~l~~~aD~~l~~---~~~~~~~~~~~~~  142 (177)
T d1jeoa_         113 VC-ECG-NVVEFADLTIPL---EVKKSKYLPMGTT  142 (177)
T ss_dssp             ES-SCC-GGGGGCSEEEEC---CCCCBTTBCTTHH
T ss_pred             EC-CCC-CHHHHCCCEEEE---EECCCCCCCCCHH
T ss_conf             36-888-679856836998---6435435657469


No 296
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.72  E-value=20  Score=13.26  Aligned_cols=43  Identities=16%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             HHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHH
Q ss_conf             5664102457479971832234412306999961843356655376136521002556
Q gi|254780401|r  126 GVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQL  183 (338)
Q Consensus       126 ~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d~~~~~gn~~llPaGpLREp~~~~l  183 (338)
                      -|..+.+.+.|.||-|+           +|+++|..    .|+++|-=.+.+.+..++
T Consensus        71 ~A~~lf~~d~dYiV~d~-----------~v~ivDe~----TGR~~~grr~s~GLHQai  113 (124)
T d1nkta1          71 KAKELFSRDKDYIVRDG-----------EVLIVDEF----TGRVLIGRRYNEGMHQAI  113 (124)
T ss_dssp             HHHHHCCBTTTEEECSS-----------CEEEBCSS----SCCBCTTCCCSTTHHHHH
T ss_pred             HHHHHHHCCCEEEEECC-----------EEEEEECC----CCCCCCCCCCCHHHHHHH
T ss_conf             87775206953897448-----------69997345----887515878371789999


No 297
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.54  E-value=21  Score=13.23  Aligned_cols=31  Identities=29%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEE---EECC
Q ss_conf             00078887489999999985247315987---6045
Q gi|254780401|r   52 FVMGGTGKTPTALAIAKAVIDKNLKPGFL---SRGY   84 (338)
Q Consensus        52 itvGGtGKTP~v~~l~~~l~~~g~~~~il---sRGY   84 (338)
                      +.+||||=  +=.+|++.|.++|++|.++   ||++
T Consensus         5 LVTGatGf--iG~~lv~~Ll~~g~~V~~iDnl~~~~   38 (393)
T d1i24a_           5 MVIGGDGY--CGWATALHLSKKNYEVCIVDNLVRRL   38 (393)
T ss_dssp             EEETTTSH--HHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             EEECCCCH--HHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             99899848--99999999997859899994677542


No 298
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=20.47  E-value=21  Score=13.22  Aligned_cols=51  Identities=8%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             578999887401000012214332348989999999975647987998546
Q gi|254780401|r  234 TEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAK  284 (338)
Q Consensus       234 P~~F~~~L~~~g~~i~~~~~fpDHh~ys~~dl~~i~~~a~~~~~~iiTTEK  284 (338)
                      ...|-...+.+|++.+..+.-.....-|.+++.++.+.+++.+...|.+|.
T Consensus       172 H~a~~Yf~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e~  222 (279)
T d1xvla1         172 EGAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCES  222 (279)
T ss_dssp             ESTTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEET
T ss_pred             CCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             453013566369626630256885668988999999998754861898247


No 299
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.35  E-value=21  Score=13.21  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=27.4

Q ss_pred             CCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             38898899823000788874899999999852473159876045
Q gi|254780401|r   41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGY   84 (338)
Q Consensus        41 ~~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGY   84 (338)
                      +.|-.|+.||.     .   +.-..+|..|.+.|.+|.++.|+=
T Consensus        20 ~~p~~v~IiGg-----G---~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGG-----G---YIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECC-----S---HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             HCCCEEEEECC-----C---CCCEEEEEEECCCCCEEEEEEECC
T ss_conf             16986999999-----8---652164430012551799997313


No 300
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.33  E-value=15  Score=14.13  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=15.7

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHH
Q ss_conf             8898899823000788874899999
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAI   66 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l   66 (338)
                      ....|+.+|.   +|+|||-++..+
T Consensus         5 ~~~KilllG~---~~vGKTsll~~~   26 (221)
T d1azta2           5 ATHRLLLLGA---GESGKSTIVKQM   26 (221)
T ss_dssp             HSEEEEEECS---TTSSHHHHHHHH
T ss_pred             HCCEEEEECC---CCCCHHHHHHHH
T ss_conf             3477999989---999889999989


No 301
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.32  E-value=21  Score=13.20  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8899823000788874899999999852473159876
Q gi|254780401|r   45 PVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLS   81 (338)
Q Consensus        45 pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ils   81 (338)
                      .|..+|.   |+++  +++.+++..|...|+.+..++
T Consensus        42 ~I~i~G~---G~S~--~~a~~~~~~l~~lg~~~~~~~   73 (192)
T d1vima_          42 SIFVIGA---GRSG--YIAKAFAMRLMHLGYTVYVVG   73 (192)
T ss_dssp             CEEEECS---HHHH--HHHHHHHHHHHHTTCCEEETT
T ss_pred             CEEEEEC---CCCH--HHHHHHHHHHCCCCCCCCCCC
T ss_conf             6899966---7310--025666653024465521011


No 302
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}
Probab=20.26  E-value=21  Score=13.19  Aligned_cols=20  Identities=25%  Similarity=0.474  Sum_probs=10.8

Q ss_pred             CCCCCEEEEEE-CCCCHHHHH
Q ss_conf             11686389874-155357899
Q gi|254780401|r  219 DLSGKKVLAFS-GIADTEKFF  238 (338)
Q Consensus       219 ~l~~k~v~afs-GIa~P~~F~  238 (338)
                      .+.|+++.+|| |=|--..||
T Consensus       127 ~~~G~rIglfSYGSG~~ae~f  147 (221)
T d1xpma2         127 LQAGETIGLFSYGSGSVGEFY  147 (221)
T ss_dssp             CCTTCEEEEEEEETTTEEEEE
T ss_pred             CCCCCEEEEEEECCCCCEEEE
T ss_conf             789898999975688403688


No 303
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}
Probab=20.21  E-value=21  Score=13.19  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=22.3

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             0078887489999999985247315987604
Q gi|254780401|r   53 VMGGTGKTPTALAIAKAVIDKNLKPGFLSRG   83 (338)
Q Consensus        53 tvGGtGKTP~v~~l~~~l~~~g~~~~ilsRG   83 (338)
                      .+||||=  +=-+|++.|.++|++|..+.|-
T Consensus        16 VTG~sGf--IGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          16 VTGANGF--VASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             EETTTSH--HHHHHHHHHHHTTCEEEEEESS
T ss_pred             EECCCCH--HHHHHHHHHHHCCCEEEEEECC
T ss_conf             9799889--9999999999785989999688


No 304
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.19  E-value=21  Score=13.18  Aligned_cols=25  Identities=16%  Similarity=0.237  Sum_probs=11.3

Q ss_pred             CCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf             3465201225664102457479971
Q gi|254780401|r  117 TIVTSDRKIGVQMLLQEGVDIIIMD  141 (338)
Q Consensus       117 v~V~~~R~~~~~~~~~~~~diiIlD  141 (338)
                      |..+.+-.+|.+.+.+..+|+||+|
T Consensus        28 v~~a~~~~eal~~~~~~~~dlvl~D   52 (121)
T d1ys7a2          28 VATAVDGAEALRSATENRPDAIVLD   52 (121)
T ss_dssp             EEEESSHHHHHHHHHHSCCSEEEEE
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEEE
T ss_conf             9998788999999982798789977


No 305
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
Probab=20.19  E-value=21  Score=13.18  Aligned_cols=47  Identities=21%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             HHHHHHHCC-CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEE
Q ss_conf             123322057-6346520122566410245747997183223441230699996
Q gi|254780401|r  107 EPLLLARRA-VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVV  158 (338)
Q Consensus       107 Ep~lla~~~-pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~  158 (338)
                      +|+.+++++ +-..-+|-..|.+.+.+.|+|.|=+|     -++-+|-.+|+.
T Consensus         2 ~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~D-----V~lTkDg~~Vv~   49 (328)
T d1ydya1           2 EKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQD-----LVMTKDDNLVVL   49 (328)
T ss_dssp             CCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEE-----EEECTTSCEEEC
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEE-----EEECCCCCEEEE
T ss_conf             978995899888997447999999998697999985-----428459968997


No 306
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=20.16  E-value=21  Score=13.20  Aligned_cols=47  Identities=21%  Similarity=0.230  Sum_probs=29.5

Q ss_pred             HHHHHHCC-CCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf             23322057-63465201225664102457479971832234412306999961
Q gi|254780401|r  108 PLLLARRA-VTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVN  159 (338)
Q Consensus       108 p~lla~~~-pv~V~~~R~~~~~~~~~~~~diiIlDDGfQh~~l~rdl~Ivl~d  159 (338)
                      |+.+|+++ +.-.-+|-..|.+.+.+.|+|.|=+|     -++-+|=.+|+..
T Consensus         1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~~iE~D-----V~~TkDg~~vv~H   48 (217)
T d1vd6a1           1 PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELD-----VWPTRDGVFAVRH   48 (217)
T ss_dssp             CEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEE-----EEECTTSCEEECS
T ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEE-----EEEECCCCEEEEC
T ss_conf             95997799999998305999999998598989998-----8895599878854


No 307
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.01  E-value=21  Score=13.16  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             CCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8898899823000788874899999999852473159876045787
Q gi|254780401|r   42 APIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRK   87 (338)
Q Consensus        42 ~~~pVI~VGNitvGGtGKTP~v~~l~~~l~~~g~~~~ilsRGYg~~   87 (338)
                      .|-|.|.||+       | |+..+..+.|++.|..-.++.-||+..
T Consensus        20 ~PKpli~i~g-------k-piie~~i~~l~~~~~~~iiiv~~~~~~   57 (248)
T d2oi6a2          20 LPKVLHTLAG-------K-AMVQHVIDAANELGAAHVHLVYGHGGD   57 (248)
T ss_dssp             SCGGGSEETT-------E-EHHHHHHHHHHHHTCSCEEEEESSCHH
T ss_pred             CCEEEEEECC-------H-HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             8922079998-------1-299999999997699679850576644


Done!