RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] (338 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 50.7 bits (121), Expect = 5e-07 Identities = 56/313 (17%), Positives = 103/313 (32%), Gaps = 112/313 (35%) Query: 54 MGGTGKTPTALAIAKAVIDKNLKPGFL--SRGYGRKSRI--SFRVDLEKHS---AYDVGD 106 M P L+ +L+ L + + S++ F L + + A D D Sbjct: 1 MDAYSTRPLTLS------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--D 52 Query: 107 EP---LLLARRAVTIVTS---DRKIG-----VQMLLQE-------GVDIIIMDDGFHS-- 146 EP L + + V+S K+G + + L E G DI H+ Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALA 105 Query: 147 ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKS 206 A L + +V + + N Y+ A + K+ S Sbjct: 106 AKLLQENDTTLVKTKELIKN------------------YITARIMAKRP----FDKKSNS 143 Query: 207 VYFAKLKPRLTFDLSGK-KVLA-FSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKK 264 F + G +++A F G +T+ +F +R L Y Sbjct: 144 ALFRAVG-------EGNAQLVAIFGGQGNTDDYFEELRDL-------YQ----------- 178 Query: 265 IAY--LLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIV--FENPD---D 317 Y L+ ++ +A+ L + AE++F + + +I+ ENP D Sbjct: 179 -TYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNTPD 227 Query: 318 LTNLVEMTV-VSF 329 L+ ++ +S Sbjct: 228 KDYLL--SIPISC 238 Score = 39.5 bits (92), Expect = 0.001 Identities = 37/191 (19%), Positives = 57/191 (29%), Gaps = 81/191 (42%) Query: 52 FVMGGTGKTPTAL---------AIAKAVIDKNLKPGFLSRGYGRKSRISFR---VDLEKH 99 V+ G P +L A A + +D++ P F S RK + S R V H Sbjct: 377 LVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIP-F-SE---RKLKFSNRFLPVASPFH 428 Query: 100 SAYDVGDEPLL---LARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHS---ADLQA-D 152 S V L+ L + V+ D +I V + + +DL+ Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPV----------------YDTFDGSDLRVLS 472 Query: 153 FSLI----------VVN---------SH---------RGLGN---------GL-VFPAGP 174 S+ V +H GLG G+ V AG Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532 Query: 175 LRVPLSRQLSY 185 L + + Sbjct: 533 LDINPDDDYGF 543 Score = 36.8 bits (85), Expect = 0.008 Identities = 55/292 (18%), Positives = 89/292 (30%), Gaps = 100/292 (34%) Query: 9 WKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAP---IPVICVGGFVMGGTGKTPT-AL 64 W++ F+ I+ ++ FI R P +P + + G P+ L Sbjct: 289 WES--FFVSVRKAITVLF-FIGV----RCYE-AYPNTSLPPSILEDSLENNEG-VPSPML 339 Query: 65 AIA----KAV---IDK-NLKPGFL---SRGY-----GR---------KSRISFRVDLEKH 99 +I+ + V ++K N L + G +S + L K Sbjct: 340 SISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396 Query: 100 SAYDVGDEPLLLARRAVTIVTSDRKIGVQM-LLQEGVDIIIMDDGFHSADLQADFSLIVV 158 A D+ +R I S+RK+ L FHS L LI Sbjct: 397 KAPSGLDQ----SR----IPFSERKLKFSNRFLPVASP-------FHSHLLVPASDLIN- 440 Query: 159 NSHRGLGNGLVFPAGPLRVP---------LSRQLSYVDAILYVGNKKNVISS----IKNK 205 + N + F A +++P L R LS ++ I Sbjct: 441 --KDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLS-----------GSISERIVDCIIRL 486 Query: 206 SVYFAKLKPRLTFDLSGKKVLAF-----SGIAD-TEKFF--TTVR--QLGAL 247 V + F + +L F SG+ T + T VR G L Sbjct: 487 PVKWETT---TQFKAT--HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533 Score = 31.5 bits (71), Expect = 0.26 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 271 QAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEV-DIVFENPDDLT 319 Q Q G+ L T+K A + R A+ F + + DIV NP +LT Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLT 1673 >1tly_A Nucleoside-specific channel-forming protein TSX; nucleoside transporter, beta barrel, membrane protein; 3.01A {Escherichia coli} SCOP: f.4.6.1 PDB: 1tlw_A 1tlz_A* Length = 278 Score = 31.8 bits (72), Expect = 0.24 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 185 YVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFD-LSGKKVLAFSGIAD 233 Y DA ++ G + + S F +++PR + D L+ L+F + Sbjct: 53 YADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTD-LSFGPFKE 101 >3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens} Length = 1263 Score = 31.3 bits (70), Expect = 0.28 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 20/167 (11%) Query: 32 KLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF--------LSRG 83 + ++ +L + + G M G GK + LA L+ F + + Sbjct: 141 AIQQKLSKLKGEPGWVTIHG--MAGCGK--SVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 196 Query: 84 YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDG 143 + ++ + + R + I + ++ + ML + ++I+DD Sbjct: 197 DKSG-----LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 251 Query: 144 FHSADLQA--DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDA 188 + S L+A I++ + R VP+ L Sbjct: 252 WDSWVLKAFDSQCQILLTT-RDKSVTDSVMGPKYVVPVESSLGKEKG 297 >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 Score = 29.6 bits (65), Expect = 0.95 Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 3/91 (3%) Query: 56 GTGKTPTALAIAKAVIDK---NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA 112 GTGKT + + K K +++ LE + Sbjct: 55 GTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAE 114 Query: 113 RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDG 143 + +++ + +D + Sbjct: 115 LYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN 145 >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Score = 29.5 bits (65), Expect = 0.99 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 7/124 (5%) Query: 31 SKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90 + + ++ +L + + G M G GK + LA L+ F + Sbjct: 134 NAIQQKLSKLKGEPGWVTIHG--MAGCGK--SVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 Query: 91 SFRVDL---EKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147 + L ++ + + R + I + ++ + ML + ++I+DD + S Sbjct: 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW 249 Query: 148 DLQA 151 L+A Sbjct: 250 VLKA 253 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Length = 282 Score = 29.5 bits (66), Expect = 1.0 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%) Query: 70 VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG----DEPLLLARRAVTIVTSDRKI 125 V+D G G + +++K A+ +G ++P++ ++ K Sbjct: 94 VVDLGCGRG------GWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT 147 Query: 126 GVQMLLQEGVDIIIMDDGFHSADLQAD 152 V + D ++ D G S + + Sbjct: 148 DVFNMEVIPGDTLLCDIGESSPSIAVE 174 >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Length = 174 Score = 29.5 bits (66), Expect = 1.2 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 12/113 (10%) Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYD 103 IP++ + GTGKT + A+ + ++PG + + VD Sbjct: 6 IPLLAFAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-----MDVDKP-----G 53 Query: 104 VGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156 L A A TIV S ++ + + ++ + + D L+ Sbjct: 54 KDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILV 106 >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299 Score = 29.4 bits (65), Expect = 1.3 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 28/147 (19%) Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSR 89 + ++ + G +GKT + +A ID +L+ G+ + + Sbjct: 99 MMETENNILMITG-ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE 157 Query: 90 ISFRVDLEKHSAYDVGDEPL-----------LLARRAVTIVTSDRKIGVQMLLQEGVDII 138 L + + + ++ DR + + D++ Sbjct: 158 HGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLV 217 Query: 139 IMDD--GFHSADLQ-----ADFSLIVV 158 I+D +D SL+V Sbjct: 218 IVDTPPMLAVSDAAVVGRSVGTSLLVA 244 >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Length = 269 Score = 29.1 bits (65), Expect = 1.5 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 101 AYDVGD----EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152 Y G EP+L+ IVT + V E D ++ D G S + + Sbjct: 102 GYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGESSPSAEIE 157 >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Length = 398 Score = 29.1 bits (64), Expect = 1.6 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 17/125 (13%) Query: 3 KSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPT 62 K +F + G + I I + + + + ++ VI + GG KT + Sbjct: 67 KGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNL-KGGVSKTVS 125 Query: 63 ALAIAKA---------------VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDE 107 +++A A VID + + + K I + Sbjct: 126 TVSLAHAMRAHPHLLMEDLRILVIDLDPQ-SSATMFLSHKHSIGIVNATSAQAMLQNVSR 184 Query: 108 PLLLA 112 LL Sbjct: 185 EELLE 189 >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298 Score = 28.9 bits (63), Expect = 1.7 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 12/58 (20%) Query: 55 GGTGKTPTALAIAKAVIDKNLKP--------GFLSRGYGRKSRISFRVDLEKHSAYDV 104 GG GK+ + A NLK L++ +F+V+L + + Y+ Sbjct: 46 GGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLA----KTFKVELPRVNFYEG 99 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Length = 305 Score = 28.7 bits (64), Expect = 1.9 Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 53/175 (30%) Query: 70 VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG----DEPLLLARRAVTIVTSDRKI 125 V+D G G ++ + G +EP+ ++ +V + Sbjct: 86 VVDLGCGRG------GWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGV 139 Query: 126 GVQMLLQEGVDIIIMDDGFHSADLQAD----------------------------FSLIV 157 V + E D ++ D G S + + + V Sbjct: 140 DVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSV 199 Query: 158 VNS----HRGLGNGLVFPAGPLRVPLSRQLSYVDAILYV--GNKKNVISSIKNKS 206 + R G LV R PLSR + +Y N++SS+ S Sbjct: 200 IEKMEALQRKHGGALV------RNPLSRNST---HEMYWVSNASGNIVSSVNMIS 245 >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Length = 403 Score = 28.3 bits (62), Expect = 2.7 Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 15/81 (18%) Query: 46 VICVGGFVMGGTGKTPTA--LAIAKAVIDKNLKPGF------------LSRGYGRKSRIS 91 VI V GG KT + LA A V L+ + I Sbjct: 113 VIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIG 171 Query: 92 FRVDLEKHSAYDVGDEPLLLA 112 ++ + + D L Sbjct: 172 SILETAAQAMLNNLDAETLRK 192 >1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Length = 412 Score = 28.0 bits (61), Expect = 2.7 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%) Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73 + ++L G L + G G GKT A K V + Sbjct: 34 LARIYLNRL-LSGAGLSDVNMIYGSIG--RVGIGKTTLAKFTVKRVSEA 79 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 Score = 27.9 bits (61), Expect = 3.0 Identities = 6/14 (42%), Positives = 8/14 (57%) Query: 56 GTGKTPTALAIAKA 69 G GKT A +A+ Sbjct: 87 GIGKTTAAHLVAQE 100 >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 Score = 28.1 bits (61), Expect = 3.0 Identities = 3/19 (15%), Positives = 9/19 (47%) Query: 56 GTGKTPTALAIAKAVIDKN 74 G G A+++ ++ + Sbjct: 34 GMGDDALIYALSRYLLCQQ 52 >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 Score = 27.7 bits (60), Expect = 3.7 Identities = 5/20 (25%), Positives = 11/20 (55%) Query: 56 GTGKTPTALAIAKAVIDKNL 75 GTGK +A+ +++ + Sbjct: 46 GTGKKTRCMALLESIFGPGV 65 >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 Score = 27.3 bits (59), Expect = 4.5 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%) Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMG--GTGKTPTALAIAKAVIDK 73 + + + L G ++G GTGKT T + + DK Sbjct: 29 LDILLGNWLRNPGHHYPRAT--------LLGRPGTGKTVTLRKLWELYKDK 71 >2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 Length = 608 Score = 27.4 bits (60), Expect = 4.6 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 78 GFLSRGYGRKSRISFRVDLEKHSAYDVG---DEPLLLARRAVTIVTSD 122 G + RG G K + + + + + D+G D+ + ++AV+ Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGCQKAVSPAAET 57 >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 Score = 27.4 bits (60), Expect = 4.6 Identities = 7/15 (46%), Positives = 9/15 (60%) Query: 56 GTGKTPTALAIAKAV 70 G GKT A +AK + Sbjct: 48 GVGKTSIARLLAKGL 62 >2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Length = 350 Score = 27.5 bits (61), Expect = 4.7 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 I V+ V G GK TA+ + + ++K +K GFL+ G Sbjct: 168 KIKVVGVFGTDCV-VGKRTTAVQLWERALEKGIKAGFLATG 207 >2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413} Length = 349 Score = 27.5 bits (61), Expect = 4.8 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83 G P + G M GK T+L + A + + FL+ G Sbjct: 145 GAARTLPCRRVLTVGTDMA-IGKMSTSLELHWAAKLRGWRSKFLATG 190 >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Length = 271 Score = 27.5 bits (60), Expect = 5.1 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 28/148 (18%) Query: 42 APIPVICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISF 92 + + I + G GK+ A +A A ++D +++ + + Sbjct: 80 SAVQSIVITS-EAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGL 138 Query: 93 RVDLEKHSAYD-------VGDEPLLLA----RRAVTIVTSDRKIGVQMLLQEGVDIIIMD 141 L S Y + D +L + ++TS + L + +I+D Sbjct: 139 SSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIID 198 Query: 142 --DGFHSADLQ-----ADFSLIVVNSHR 162 D Q + VVNS Sbjct: 199 TPPVNTVTDAQLFSKFTGNVVYVVNSEN 226 >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 Score = 27.3 bits (59), Expect = 5.3 Identities = 6/24 (25%), Positives = 12/24 (50%) Query: 56 GTGKTPTALAIAKAVIDKNLKPGF 79 G GKT + +A ++ ++ G Sbjct: 52 GIGKTTSVHCLAHELLGRSYADGV 75 >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA; HET: PLP; 1.90A {Sulfolobus tokodaii str} Length = 419 Score = 27.2 bits (59), Expect = 5.7 Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289 + VR +G ++KK+ ++ ++ ++GL+L+ + A+R+ Sbjct: 346 QGLADDVRGIGLAW--------GLEYNEKKVRDRIIGESFKRGLLLLPAGRSAIRV 393 >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Length = 359 Score = 27.0 bits (58), Expect = 5.8 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%) Query: 258 AHLSDKKIAYLLDQAQQKGLILVTTA----KDAMRLHKRPGRAEEI 299 A L + YLLD A +VT A+ L + GR + Sbjct: 303 AELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGRFTPV 348 >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 Score = 27.0 bits (59), Expect = 5.8 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 5/53 (9%) Query: 110 LLARRAVTIVTSDRKIGVQML--LQEGVDIIIMDDGFHSADLQADFSLIVVNS 160 R VT D ++ L L E V+ G + + LIV + Sbjct: 23 FFLARGVTPRVMDTRMTPPGLDKLPEAVERHT---GSLNDEWLMAADLIVASP 72 >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} Length = 456 Score = 27.1 bits (59), Expect = 6.0 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81 GTGKT ALAIA+ + K F Sbjct: 73 GTGKTALALAIAQEL---GSKVPFCP 95 >3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A Length = 177 Score = 27.0 bits (59), Expect = 6.1 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Query: 13 GFYSFFLYPISWIYSFISSKLMKRGQRLHAPI 44 G +FF+ + YSF+SS L K L + Sbjct: 130 GVDTFFVAT-APRYSFVSSSLAKEVAMLGGDV 160 >1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Length = 511 Score = 27.0 bits (59), Expect = 6.3 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 223 KKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT 282 VL F A+ F TT+R LG L+ Y D + +K + L++A G L Sbjct: 84 NDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLEVGNKTV--YLNKAIDLGDRLALA 140 Query: 283 AKD 285 Sbjct: 141 FLS 143 >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348 Score = 27.1 bits (59), Expect = 6.3 Identities = 35/262 (13%), Positives = 67/262 (25%), Gaps = 22/262 (8%) Query: 55 GGTGKTPTA--LAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA 112 GG GKT T+ +A+ A+ N + +S +F K + G L Sbjct: 27 GGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNLSCM 86 Query: 113 RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPA 172 SD Q Q D S + + S + + Sbjct: 87 EIDPEAAMSDL---QQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQK 143 Query: 173 GPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIA 232 S +SY I + + ++ S L +L+ G Sbjct: 144 VLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGG 203 Query: 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKR 292 + F + ++ + + + I V ++ Sbjct: 204 QQQDIFEKLNEVQKNVSEVNE--------------QFTNPELTTFICVCISEFLSLYETE 249 Query: 293 PGRAEEIFAKSMVIEVDIVFEN 314 S ++V+ + N Sbjct: 250 RMIQ---ELMSYNMDVNSIVVN 268 >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 Score = 26.9 bits (58), Expect = 6.6 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%) Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289 AD R G + +S L+ Q Q+ +I++ D +R Sbjct: 373 ADFPAVVLDPRGRGLMC--AFSLPT-----TADRDELIRQLWQRAVIVLPAGADTVRF 423 >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 Score = 26.8 bits (59), Expect = 6.7 Identities = 6/29 (20%), Positives = 17/29 (58%) Query: 261 SDKKIAYLLDQAQQKGLILVTTAKDAMRL 289 K+A ++ + Q+ L+L++ ++ +R Sbjct: 342 KSVKVAKVIQKCQENALLLISCGENDLRF 370 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265 Score = 26.8 bits (59), Expect = 7.1 Identities = 10/46 (21%), Positives = 17/46 (36%) Query: 107 EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152 P + IV ++ + L E D+I+ D G S + Sbjct: 113 VPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGESSPKWSVE 158 >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- aminobutyric acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 Score = 26.7 bits (58), Expect = 7.9 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%) Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289 A +F + VR G D+ I L+ A+ KG++L ++R Sbjct: 396 ARYPQFISRVRGRGTFCS--------FDTPDESIRNKLISIARNKGVMLGGCGDKSIRF 446 >3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.95A {Caulobacter vibrioides} Length = 317 Score = 26.5 bits (58), Expect = 8.7 Identities = 9/29 (31%), Positives = 12/29 (41%) Query: 227 AFSGIADTEKFFTTVRQLGALIEQCYSFG 255 FSG F + +LG I C+ G Sbjct: 283 MFSGGGAPPAFGVQMAKLGGDILSCWKLG 311 >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 Score = 26.3 bits (57), Expect = 10.0 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 8/55 (14%) Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289 VR +G ++ L +K Y+ ++ ++ + +R Sbjct: 326 SPKIREVRGMGLMV--------GLELKEKAAPYIARLEKEHRVLALQAGPTVIRF 372 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.409 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,891,488 Number of extensions: 133647 Number of successful extensions: 537 Number of sequences better than 10.0: 1 Number of HSP's gapped: 534 Number of HSP's successfully gapped: 54 Length of query: 338 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 245 Effective length of database: 3,438,538 Effective search space: 842441810 Effective search space used: 842441810 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (26.0 bits)