RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide
4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
(338 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 5e-07
Identities = 56/313 (17%), Positives = 103/313 (32%), Gaps = 112/313 (35%)
Query: 54 MGGTGKTPTALAIAKAVIDKNLKPGFL--SRGYGRKSRI--SFRVDLEKHS---AYDVGD 106
M P L+ +L+ L + + S++ F L + + A D D
Sbjct: 1 MDAYSTRPLTLS------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--D 52
Query: 107 EP---LLLARRAVTIVTS---DRKIG-----VQMLLQE-------GVDIIIMDDGFHS-- 146
EP L + + V+S K+G + + L E G DI H+
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALA 105
Query: 147 ADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKS 206
A L + +V + + N Y+ A + K+ S
Sbjct: 106 AKLLQENDTTLVKTKELIKN------------------YITARIMAKRP----FDKKSNS 143
Query: 207 VYFAKLKPRLTFDLSGK-KVLA-FSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKK 264
F + G +++A F G +T+ +F +R L Y
Sbjct: 144 ALFRAVG-------EGNAQLVAIFGGQGNTDDYFEELRDL-------YQ----------- 178
Query: 265 IAY--LLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEVDIV--FENPD---D 317
Y L+ ++ +A+ L + AE++F + + +I+ ENP D
Sbjct: 179 -TYHVLVGD------LIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNTPD 227
Query: 318 LTNLVEMTV-VSF 329
L+ ++ +S
Sbjct: 228 KDYLL--SIPISC 238
Score = 39.5 bits (92), Expect = 0.001
Identities = 37/191 (19%), Positives = 57/191 (29%), Gaps = 81/191 (42%)
Query: 52 FVMGGTGKTPTAL---------AIAKAVIDKNLKPGFLSRGYGRKSRISFR---VDLEKH 99
V+ G P +L A A + +D++ P F S RK + S R V H
Sbjct: 377 LVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIP-F-SE---RKLKFSNRFLPVASPFH 428
Query: 100 SAYDVGDEPLL---LARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHS---ADLQA-D 152
S V L+ L + V+ D +I V + + +DL+
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPV----------------YDTFDGSDLRVLS 472
Query: 153 FSLI----------VVN---------SH---------RGLGN---------GL-VFPAGP 174
S+ V +H GLG G+ V AG
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 175 LRVPLSRQLSY 185
L + +
Sbjct: 533 LDINPDDDYGF 543
Score = 36.8 bits (85), Expect = 0.008
Identities = 55/292 (18%), Positives = 89/292 (30%), Gaps = 100/292 (34%)
Query: 9 WKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAP---IPVICVGGFVMGGTGKTPT-AL 64
W++ F+ I+ ++ FI R P +P + + G P+ L
Sbjct: 289 WES--FFVSVRKAITVLF-FIGV----RCYE-AYPNTSLPPSILEDSLENNEG-VPSPML 339
Query: 65 AIA----KAV---IDK-NLKPGFL---SRGY-----GR---------KSRISFRVDLEKH 99
+I+ + V ++K N L + G +S + L K
Sbjct: 340 SISNLTQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 100 SAYDVGDEPLLLARRAVTIVTSDRKIGVQM-LLQEGVDIIIMDDGFHSADLQADFSLIVV 158
A D+ +R I S+RK+ L FHS L LI
Sbjct: 397 KAPSGLDQ----SR----IPFSERKLKFSNRFLPVASP-------FHSHLLVPASDLIN- 440
Query: 159 NSHRGLGNGLVFPAGPLRVP---------LSRQLSYVDAILYVGNKKNVISS----IKNK 205
+ N + F A +++P L R LS ++ I
Sbjct: 441 --KDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLS-----------GSISERIVDCIIRL 486
Query: 206 SVYFAKLKPRLTFDLSGKKVLAF-----SGIAD-TEKFF--TTVR--QLGAL 247
V + F + +L F SG+ T + T VR G L
Sbjct: 487 PVKWETT---TQFKAT--HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 31.5 bits (71), Expect = 0.26
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 271 QAQQKGLILVTTAKDAMRLHKRPGRAEEIFAKSMVIEV-DIVFENPDDLT 319
Q Q G+ L T+K A + R A+ F + + DIV NP +LT
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLT 1673
>1tly_A Nucleoside-specific channel-forming protein TSX; nucleoside
transporter, beta barrel, membrane protein; 3.01A
{Escherichia coli} SCOP: f.4.6.1 PDB: 1tlw_A 1tlz_A*
Length = 278
Score = 31.8 bits (72), Expect = 0.24
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 185 YVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFD-LSGKKVLAFSGIAD 233
Y DA ++ G + + S F +++PR + D L+ L+F +
Sbjct: 53 YADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTD-LSFGPFKE 101
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
sapiens}
Length = 1263
Score = 31.3 bits (70), Expect = 0.28
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 20/167 (11%)
Query: 32 KLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF--------LSRG 83
+ ++ +L + + G M G GK + LA L+ F + +
Sbjct: 141 AIQQKLSKLKGEPGWVTIHG--MAGCGK--SVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 196
Query: 84 YGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDG 143
+ ++ + + R + I + ++ + ML + ++I+DD
Sbjct: 197 DKSG-----LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 251
Query: 144 FHSADLQA--DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDA 188
+ S L+A I++ + R VP+ L
Sbjct: 252 WDSWVLKAFDSQCQILLTT-RDKSVTDSVMGPKYVVPVESSLGKEKG 297
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 29.6 bits (65), Expect = 0.95
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 56 GTGKTPTALAIAKAVIDK---NLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA 112
GTGKT + + K K +++ LE +
Sbjct: 55 GTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAE 114
Query: 113 RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDG 143
+ +++ + +D +
Sbjct: 115 LYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN 145
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.5 bits (65), Expect = 0.99
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 31 SKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90
+ + ++ +L + + G M G GK + LA L+ F +
Sbjct: 134 NAIQQKLSKLKGEPGWVTIHG--MAGCGK--SVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189
Query: 91 SFRVDL---EKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSA 147
+ L ++ + + R + I + ++ + ML + ++I+DD + S
Sbjct: 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW 249
Query: 148 DLQA 151
L+A
Sbjct: 250 VLKA 253
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme structure, ATP-binding, nucleotide-binding; HET:
SAM; 1.70A {Yokose virus}
Length = 282
Score = 29.5 bits (66), Expect = 1.0
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 70 VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG----DEPLLLARRAVTIVTSDRKI 125
V+D G G + +++K A+ +G ++P++ ++ K
Sbjct: 94 VVDLGCGRG------GWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT 147
Query: 126 GVQMLLQEGVDIIIMDDGFHSADLQAD 152
V + D ++ D G S + +
Sbjct: 148 DVFNMEVIPGDTLLCDIGESSPSIAVE 174
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.5 bits (66), Expect = 1.2
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYD 103
IP++ + GTGKT + A+ + ++PG + + VD
Sbjct: 6 IPLLAFAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-----MDVDKP-----G 53
Query: 104 VGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156
L A A TIV S ++ + + ++ + + D L+
Sbjct: 54 KDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILV 106
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 29.4 bits (65), Expect = 1.3
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 28/147 (19%)
Query: 39 RLHAPIPVICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSR 89
+ ++ + G +GKT + +A ID +L+ G+ + +
Sbjct: 99 MMETENNILMITG-ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE 157
Query: 90 ISFRVDLEKHSAYDVGDEPL-----------LLARRAVTIVTSDRKIGVQMLLQEGVDII 138
L + + + ++ DR + + D++
Sbjct: 158 HGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLV 217
Query: 139 IMDD--GFHSADLQ-----ADFSLIVV 158
I+D +D SL+V
Sbjct: 218 IVDTPPMLAVSDAAVVGRSVGTSLLVA 244
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 29.1 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 101 AYDVGD----EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152
Y G EP+L+ IVT + V E D ++ D G S + +
Sbjct: 102 GYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGESSPSAEIE 157
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
binding protein; HET: ADP EPE; 2.05A {Escherichia coli}
PDB: 3ez6_A* 3ez7_A
Length = 398
Score = 29.1 bits (64), Expect = 1.6
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 3 KSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPT 62
K +F + G + I I + + + + ++ VI + GG KT +
Sbjct: 67 KGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNL-KGGVSKTVS 125
Query: 63 ALAIAKA---------------VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDE 107
+++A A VID + + + K I +
Sbjct: 126 TVSLAHAMRAHPHLLMEDLRILVIDLDPQ-SSATMFLSHKHSIGIVNATSAQAMLQNVSR 184
Query: 108 PLLLA 112
LL
Sbjct: 185 EELLE 189
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 28.9 bits (63), Expect = 1.7
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 55 GGTGKTPTALAIAKAVIDKNLKP--------GFLSRGYGRKSRISFRVDLEKHSAYDV 104
GG GK+ + A NLK L++ +F+V+L + + Y+
Sbjct: 46 GGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLA----KTFKVELPRVNFYEG 99
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A* 3evg_A*
Length = 305
Score = 28.7 bits (64), Expect = 1.9
Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 53/175 (30%)
Query: 70 VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVG----DEPLLLARRAVTIVTSDRKI 125
V+D G G ++ + G +EP+ ++ +V +
Sbjct: 86 VVDLGCGRG------GWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGV 139
Query: 126 GVQMLLQEGVDIIIMDDGFHSADLQAD----------------------------FSLIV 157
V + E D ++ D G S + + + V
Sbjct: 140 DVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSV 199
Query: 158 VNS----HRGLGNGLVFPAGPLRVPLSRQLSYVDAILYV--GNKKNVISSIKNKS 206
+ R G LV R PLSR + +Y N++SS+ S
Sbjct: 200 IEKMEALQRKHGGALV------RNPLSRNST---HEMYWVSNASGNIVSSVNMIS 245
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 28.3 bits (62), Expect = 2.7
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 46 VICVGGFVMGGTGKTPTA--LAIAKAVIDKNLKPGF------------LSRGYGRKSRIS 91
VI V GG KT + LA A V L+ + I
Sbjct: 113 VIFVVNL-KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTHSIG 171
Query: 92 FRVDLEKHSAYDVGDEPLLLA 112
++ + + D L
Sbjct: 172 SILETAAQAMLNNLDAETLRK 192
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+
ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP:
a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 28.0 bits (61), Expect = 2.7
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDK 73
+ ++L G L + G G GKT A K V +
Sbjct: 34 LARIYLNRL-LSGAGLSDVNMIYGSIG--RVGIGKTTLAKFTVKRVSEA 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 516
Score = 27.9 bits (61), Expect = 3.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 56 GTGKTPTALAIAKA 69
G GKT A +A+
Sbjct: 87 GIGKTTAAHLVAQE 100
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 28.1 bits (61), Expect = 3.0
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 56 GTGKTPTALAIAKAVIDKN 74
G G A+++ ++ +
Sbjct: 34 GMGDDALIYALSRYLLCQQ 52
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 354
Score = 27.7 bits (60), Expect = 3.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 56 GTGKTPTALAIAKAVIDKNL 75
GTGK +A+ +++ +
Sbjct: 46 GTGKKTRCMALLESIFGPGV 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 27.3 bits (59), Expect = 4.5
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMG--GTGKTPTALAIAKAVIDK 73
+ + + L G ++G GTGKT T + + DK
Sbjct: 29 LDILLGNWLRNPGHHYPRAT--------LLGRPGTGKTVTLRKLWELYKDK 71
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 27.4 bits (60), Expect = 4.6
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 78 GFLSRGYGRKSRISFRVDLEKHSAYDVG---DEPLLLARRAVTIVTSD 122
G + RG G K + + + + + D+G D+ + ++AV+
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMGCQKAVSPAAET 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 27.4 bits (60), Expect = 4.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 56 GTGKTPTALAIAKAV 70
G GKT A +AK +
Sbjct: 48 GVGKTSIARLLAKGL 62
>2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI,
protein structure initiative, joint center for
structural genomics, JCSG; 2.67A {Thermotoga maritima}
SCOP: c.37.1.10
Length = 350
Score = 27.5 bits (61), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83
I V+ V G GK TA+ + + ++K +K GFL+ G
Sbjct: 168 KIKVVGVFGTDCV-VGKRTTAVQLWERALEKGIKAGFLATG 207
>2obn_A Hypothetical protein; protein of unknown function DUF1611,
structural genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis
atcc 29413}
Length = 349
Score = 27.5 bits (61), Expect = 4.8
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 37 GQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83
G P + G M GK T+L + A + + FL+ G
Sbjct: 145 GAARTLPCRRVLTVGTDMA-IGKMSTSLELHWAAKLRGWRSKFLATG 190
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 27.5 bits (60), Expect = 5.1
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 28/148 (18%)
Query: 42 APIPVICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISF 92
+ + I + G GK+ A +A A ++D +++ + +
Sbjct: 80 SAVQSIVITS-EAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGL 138
Query: 93 RVDLEKHSAYD-------VGDEPLLLA----RRAVTIVTSDRKIGVQMLLQEGVDIIIMD 141
L S Y + D +L + ++TS + L + +I+D
Sbjct: 139 SSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIID 198
Query: 142 --DGFHSADLQ-----ADFSLIVVNSHR 162
D Q + VVNS
Sbjct: 199 TPPVNTVTDAQLFSKFTGNVVYVVNSEN 226
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 323
Score = 27.3 bits (59), Expect = 5.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 56 GTGKTPTALAIAKAVIDKNLKPGF 79
G GKT + +A ++ ++ G
Sbjct: 52 GIGKTTSVHCLAHELLGRSYADGV 75
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA; HET: PLP; 1.90A {Sulfolobus tokodaii
str}
Length = 419
Score = 27.2 bits (59), Expect = 5.7
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289
+ VR +G ++KK+ ++ ++ ++GL+L+ + A+R+
Sbjct: 346 QGLADDVRGIGLAW--------GLEYNEKKVRDRIIGESFKRGLLLLPAGRSAIRV 393
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 27.0 bits (58), Expect = 5.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 258 AHLSDKKIAYLLDQAQQKGLILVTTA----KDAMRLHKRPGRAEEI 299
A L + YLLD A +VT A+ L + GR +
Sbjct: 303 AELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGRFTPV 348
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A*
2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A*
3uag_A* 2uag_A*
Length = 439
Score = 27.0 bits (59), Expect = 5.8
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 110 LLARRAVTIVTSDRKIGVQML--LQEGVDIIIMDDGFHSADLQADFSLIVVNS 160
R VT D ++ L L E V+ G + + LIV +
Sbjct: 23 FFLARGVTPRVMDTRMTPPGLDKLPEAVERHT---GSLNDEWLMAADLIVASP 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens}
Length = 456
Score = 27.1 bits (59), Expect = 6.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 56 GTGKTPTALAIAKAVIDKNLKPGFLS 81
GTGKT ALAIA+ + K F
Sbjct: 73 GTGKTALALAIAQEL---GSKVPFCP 95
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A
{Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Length = 177
Score = 27.0 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 13 GFYSFFLYPISWIYSFISSKLMKRGQRLHAPI 44
G +FF+ + YSF+SS L K L +
Sbjct: 130 GVDTFFVAT-APRYSFVSSSLAKEVAMLGGDV 160
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG
NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP:
a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 27.0 bits (59), Expect = 6.3
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 223 KKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT 282
VL F A+ F TT+R LG L+ Y D + +K + L++A G L
Sbjct: 84 NDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLEVGNKTV--YLNKAIDLGDRLALA 140
Query: 283 AKD 285
Sbjct: 141 FLS 143
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 27.1 bits (59), Expect = 6.3
Identities = 35/262 (13%), Positives = 67/262 (25%), Gaps = 22/262 (8%)
Query: 55 GGTGKTPTA--LAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLA 112
GG GKT T+ +A+ A+ N + +S +F K + G L
Sbjct: 27 GGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNLSCM 86
Query: 113 RRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPA 172
SD Q Q D S + + S + +
Sbjct: 87 EIDPEAAMSDL---QQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQK 143
Query: 173 GPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIA 232
S +SY I + + ++ S L +L+ G
Sbjct: 144 VLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGG 203
Query: 233 DTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKR 292
+ F + ++ + + + I V ++
Sbjct: 204 QQQDIFEKLNEVQKNVSEVNE--------------QFTNPELTTFICVCISEFLSLYETE 249
Query: 293 PGRAEEIFAKSMVIEVDIVFEN 314
S ++V+ + N
Sbjct: 250 RMIQ---ELMSYNMDVNSIVVN 268
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 26.9 bits (58), Expect = 6.6
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289
AD R G + +S L+ Q Q+ +I++ D +R
Sbjct: 373 ADFPAVVLDPRGRGLMC--AFSLPT-----TADRDELIRQLWQRAVIVLPAGADTVRF 423
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 26.8 bits (59), Expect = 6.7
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 261 SDKKIAYLLDQAQQKGLILVTTAKDAMRL 289
K+A ++ + Q+ L+L++ ++ +R
Sbjct: 342 KSVKVAKVIQKCQENALLLISCGENDLRF 370
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 26.8 bits (59), Expect = 7.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 107 EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152
P + IV ++ + L E D+I+ D G S +
Sbjct: 113 VPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGESSPKWSVE 158
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4-
aminobutyric acid, antiepileptic drug target; HET: PLP;
2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 26.7 bits (58), Expect = 7.9
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289
A +F + VR G D+ I L+ A+ KG++L ++R
Sbjct: 396 ARYPQFISRVRGRGTFCS--------FDTPDESIRNKLISIARNKGVMLGGCGDKSIRF 446
>3hl1_A Ferritin like protein; NP_419375.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.95A {Caulobacter
vibrioides}
Length = 317
Score = 26.5 bits (58), Expect = 8.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 227 AFSGIADTEKFFTTVRQLGALIEQCYSFG 255
FSG F + +LG I C+ G
Sbjct: 283 MFSGGGAPPAFGVQMAKLGGDILSCWKLG 311
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 26.3 bits (57), Expect = 10.0
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289
VR +G ++ L +K Y+ ++ ++ + +R
Sbjct: 326 SPKIREVRGMGLMV--------GLELKEKAAPYIARLEKEHRVLALQAGPTVIRF 372
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,891,488
Number of extensions: 133647
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 54
Length of query: 338
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 245
Effective length of database: 3,438,538
Effective search space: 842441810
Effective search space used: 842441810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)