RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide
4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
(338 letters)
>d1tlya_ f.4.6.1 (A:) Nucleoside-specific channel-forming protein
tsx (NupA) {Escherichia coli [TaxId: 562]}
Length = 267
Score = 34.1 bits (78), Expect = 0.019
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 185 YVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFD-LSGKKVLAFSGIAD 233
Y DA ++ G + + S F +++PR + D L+ L+F +
Sbjct: 45 YADAPVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTD-LSFGPFKE 93
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 30.7 bits (69), Expect = 0.18
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 101 AYDVGD----EPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQAD 152
G EP+ ++ +V + V + E D ++ D G S + +
Sbjct: 95 GLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSPNPTVE 150
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 28.1 bits (62), Expect = 1.1
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 223 KKVLAFSGIADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTT 282
VL F A+ F TT+R LG L+ Y D + +K + L++A G L
Sbjct: 84 NDVLDFDIDAEVNVFETTIRMLGGLLS-AYHLSDVLEVGNKTV--YLNKAIDLGDRLALA 140
Query: 283 AKD 285
Sbjct: 141 FLS 143
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 21/120 (17%)
Query: 46 VICVGGFVMGGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISFRVDL 96
+I + GGTGKT ++ A +D +L LS G D+
Sbjct: 4 IISIVSGK-GGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDV 62
Query: 97 -----------EKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145
+V P + V + V L++ D I++D
Sbjct: 63 LAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAG 122
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 27.6 bits (60), Expect = 1.5
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRI 90
PI V + GF+ G GKT I K + +G S
Sbjct: 2 PIAVTLLTGFL--GAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVD 45
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 27.3 bits (59), Expect = 1.8
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 232 ADTEKFFTTVRQLGALIEQCYSFGDHAHLSDKKIA-YLLDQAQQKGLILVTTAKDAMRL 289
A +F + VR G D+ I L+ A+ KG++L ++R
Sbjct: 386 ARYPQFISRVRGRGTFCS--------FDTPDESIRNKLISIARNKGVMLGGCGDKSIRF 436
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 27.3 bits (59), Expect = 2.1
Identities = 23/284 (8%), Positives = 76/284 (26%), Gaps = 29/284 (10%)
Query: 40 LHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLK--------PGFLSRGYGRKSRIS 91
L P + G GG GKT + A A + ++ + + + + + +
Sbjct: 4 LQNIPPYLFFTG--KGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNT 61
Query: 92 FRVDLEKHSAYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADLQA 151
+ + +P A++ + K + + ++ +
Sbjct: 62 IQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFD 121
Query: 152 DFSLIVVNSHRGLGNGLVFPAGPLRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAK 211
+F+ ++ ++ + R L A + +S K
Sbjct: 122 EFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEK 181
Query: 212 LKPRLTFDLSGKKVLAFSG-----------IADTEKFFTTVRQ-----LGALIEQCYSFG 255
+ + + + + + + + + +I
Sbjct: 182 QREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKT 241
Query: 256 DHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEI 299
+ ++ +A + + +Q+ L + + + +
Sbjct: 242 EA---ANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNM 282
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 26.7 bits (57), Expect = 2.7
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 55 GGTGKTPTALAIAKA---------VIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAY 102
GGTGKT + A ++D ++ L G + ++ A
Sbjct: 11 GGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEAR 67
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 26.7 bits (59), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 43 PIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRG 83
I V+ V G GK TA+ + + ++K +K GFL+ G
Sbjct: 156 KIKVVGVFGTDCV-VGKRTTAVQLWERALEKGIKAGFLATG 195
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus
subtilis [TaxId: 1423]}
Length = 333
Score = 26.6 bits (57), Expect = 3.0
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 44 IPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGF 79
I +G + +GGT T + I L G
Sbjct: 13 ASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGI 48
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 26.3 bits (56), Expect = 3.7
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 25 IYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKN 74
+ ++L G L + G G GKT A K V +
Sbjct: 28 LARIYLNRL-LSGAGLSDVNMIYGSIG--RVGIGKTTLAKFTVKRVSEAA 74
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 26.2 bits (57), Expect = 4.2
Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 235 EKFFTTVRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRL 289
VR +G ++ L +K Y+ ++ ++ + +R
Sbjct: 318 SPKIREVRGMGLMV--------GLELKEKAAPYIARLEKEHRVLALQAGPTVIRF 364
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.2 bits (57), Expect = 4.5
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 25 IYSFISSKLMKRGQRLHAPIP--VICVGGFVMGGTGKTPTALAIAKAVIDK 73
+ + + ++ V G G +GKTP A+ +A+ K
Sbjct: 102 LTGELVGCSPVVAEFGGHRYASGMVIVTG--KGNSGKTPLVHALGEALGGK 150
>d1y2ta_ b.97.1.2 (A:) TF antigen-binding lectin {Common mushroom
(Agaricus bisporus) [TaxId: 5341]}
Length = 142
Score = 26.0 bits (57), Expect = 5.0
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 303 SMVIEVDIVFENPDDLTNLVEMTVVSFANSN 333
+ I + + P VE T +AN
Sbjct: 1 TYTISIRVYQTTPKGFFRPVERTNWKYANGG 31
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 25.7 bits (55), Expect = 5.2
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 55 GGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARR 114
GG GKT A AIA + D + D H + + L
Sbjct: 29 GGVGKTTMAAAIAVRLADMGFDVHLTT------------SDPAAHLSMTLNGSLNNLQVS 76
Query: 115 AVTIVTSDRKIGVQMLLQEGVDIIIMDDGFHSADL 149
+ + +L +G ++ DL
Sbjct: 77 RIDPHEETERYRQHVLETKGKELDEAGKRLLEEDL 111
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId:
562]}
Length = 351
Score = 25.1 bits (53), Expect = 8.8
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 55 GGTGK--TPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKH 99
GGTG P LA+A ++ + + +L ++ + + +E
Sbjct: 8 GGTGGHVFP-GLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEID 53
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 25.0 bits (54), Expect = 8.9
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 57 TGKTPTALAIAKAVIDKNLKP 77
TG T I A NLK
Sbjct: 238 TGSTEIGRVIQVAAGSSNLKR 258
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 154
Score = 25.1 bits (55), Expect = 9.3
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 155 LIVVNSHRGLGNGLVF--PAGP 174
+ VV+ G + F G
Sbjct: 47 VAVVSERHGNPARITFLDERGG 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,249,836
Number of extensions: 58033
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 21
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)