BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] (338 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 338 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/338 (100%), Positives = 338/338 (100%) Query: 1 MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60 MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT Sbjct: 1 MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60 Query: 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT Sbjct: 61 PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120 Query: 121 SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180 SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS Sbjct: 121 SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180 Query: 181 RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240 RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT Sbjct: 181 RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240 Query: 241 VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF 300 VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF Sbjct: 241 VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF 300 Query: 301 AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG 338 AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG Sbjct: 301 AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG 338 >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 26.6 bits (57), Expect = 0.66, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 26/123 (21%) Query: 55 GGTGKTPTAL-------AIAKAVIDKNLKP-GFLSRGYGRKSRISFRVDL--EKHSAYDV 104 GG GKT TA+ AI + V+ +L P G S G G ++L K+S+YD+ Sbjct: 16 GGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG--------IELYDRKYSSYDL 67 Query: 105 GDEP----LLLARRAV---TIVTSDRK-IGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156 E +L + A+ +I+ S +G++M+L D + D S L +DFS I Sbjct: 68 LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYI 127 Query: 157 VVN 159 ++ Sbjct: 128 FLD 130 >gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 160 SHRGLGNGLVFPAGP---LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLK 213 S RG ++ GP ++V L Q+ +DA+LY + I I YF K K Sbjct: 48 SERGSNTTVIVDTGPDFYMQV-LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103 >gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS 100 H IP+IC ++ G A A A+I + L + + G+ + + +K S Sbjct: 151 HRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNG--IVKMIGKPHLPIYEMAFKKIS 208 Query: 101 AYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 + ++ + + ++ LQ G+D + + DG H Sbjct: 209 SLCNS-----FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIH 248 >gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 286 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 13/53 (24%) Query: 2 MKSPLFWWKARG-------------FYSFFLYPISWIYSFISSKLMKRGQRLH 41 ++SP WWK G + FL P+ Y ++S + QRL+ Sbjct: 54 LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLN 106 >gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 336 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 237 FFTTVRQLGALIEQC-----YSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291 +FTT + + ALI + +FG+ S+KK A L+ +K + T K+A LH Sbjct: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184 Query: 292 R 292 + Sbjct: 185 K 185 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.139 0.409 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 214,897 Number of Sequences: 1233 Number of extensions: 9002 Number of successful extensions: 28 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 7 length of query: 338 length of database: 328,796 effective HSP length: 74 effective length of query: 264 effective length of database: 237,554 effective search space: 62714256 effective search space used: 62714256 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)