BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide
4'-kinase [Candidatus Liberibacter asiaticus str. psy62]
         (338 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 338

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60
           MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT
Sbjct: 1   MMKSPLFWWKARGFYSFFLYPISWIYSFISSKLMKRGQRLHAPIPVICVGGFVMGGTGKT 60

Query: 61  PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120
           PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT
Sbjct: 61  PTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHSAYDVGDEPLLLARRAVTIVT 120

Query: 121 SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180
           SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS
Sbjct: 121 SDRKIGVQMLLQEGVDIIIMDDGFHSADLQADFSLIVVNSHRGLGNGLVFPAGPLRVPLS 180

Query: 181 RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240
           RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT
Sbjct: 181 RQLSYVDAILYVGNKKNVISSIKNKSVYFAKLKPRLTFDLSGKKVLAFSGIADTEKFFTT 240

Query: 241 VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF 300
           VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF
Sbjct: 241 VRQLGALIEQCYSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHKRPGRAEEIF 300

Query: 301 AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG 338
           AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG
Sbjct: 301 AKSMVIEVDIVFENPDDLTNLVEMTVVSFANSNKKPCG 338


>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score = 26.6 bits (57), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 26/123 (21%)

Query: 55  GGTGKTPTAL-------AIAKAVIDKNLKP-GFLSRGYGRKSRISFRVDL--EKHSAYDV 104
           GG GKT TA+       AI + V+  +L P G  S G G        ++L   K+S+YD+
Sbjct: 16  GGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG--------IELYDRKYSSYDL 67

Query: 105 GDEP----LLLARRAV---TIVTSDRK-IGVQMLLQEGVDIIIMDDGFHSADLQADFSLI 156
             E      +L + A+   +I+ S    +G++M+L    D +   D   S  L +DFS I
Sbjct: 68  LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYI 127

Query: 157 VVN 159
            ++
Sbjct: 128 FLD 130


>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 24.3 bits (51), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 160 SHRGLGNGLVFPAGP---LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLK 213
           S RG    ++   GP   ++V L  Q+  +DA+LY     + I  I     YF K K
Sbjct: 48  SERGSNTTVIVDTGPDFYMQV-LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103


>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 23.5 bits (49), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 41  HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS 100
           H  IP+IC    ++   G      A A A+I + L    + +  G+     + +  +K S
Sbjct: 151 HRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNG--IVKMIGKPHLPIYEMAFKKIS 208

Query: 101 AYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145
           +           ++ +  +       ++  LQ G+D + + DG H
Sbjct: 209 SLCNS-----FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIH 248


>gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 286

 Score = 23.5 bits (49), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 13/53 (24%)

Query: 2   MKSPLFWWKARG-------------FYSFFLYPISWIYSFISSKLMKRGQRLH 41
           ++SP  WWK  G             +   FL P+   Y ++S +     QRL+
Sbjct: 54  LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLN 106


>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 23.5 bits (49), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 237 FFTTVRQLGALIEQC-----YSFGDHAHLSDKKIAYLLDQAQQKGLILVTTAKDAMRLHK 291
           +FTT + + ALI +       +FG+    S+KK A L+    +K  +  T  K+A  LH 
Sbjct: 125 YFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD 184

Query: 292 R 292
           +
Sbjct: 185 K 185


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,897
Number of Sequences: 1233
Number of extensions: 9002
Number of successful extensions: 28
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 338
length of database: 328,796
effective HSP length: 74
effective length of query: 264
effective length of database: 237,554
effective search space: 62714256
effective search space used: 62714256
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)