HHsearch alignment for GI: 254780402 and conserved domain: COG0763
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].
Probab=98.80 E-value=8.4e-07 Score=64.36 Aligned_cols=324 Identities=18% Similarity=0.160 Sum_probs=192.9
Q ss_pred ECCHHHH---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCC-CEEE-----------EECCCCCCHHHHHHHH--
Q ss_conf 1789999---999999999986199899996277630012101477-4168-----------8505572013445574--
Q gi|254780402|r 63 ASSVGET---MALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQ-YAIH-----------QYAPLDIQPAVSRFLK-- 125 (440)
Q Consensus 63 aaSvGE~---~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~~~-~~~~-----------~y~P~D~~~~~~~fl~-- 125 (440)
T Consensus 5 ~i~AGE~SGDllGa~LikaLk~~~~~~ef--vGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp-~llk~~~~~~~~i 81 (381)
T COG0763 5 ALSAGEASGDLLGAGLIKALKARYPDVEF--VGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLP-RLLKIRRELVRYI 81 (381)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCEEE--EEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 99904443114689999999863898389--98176788865576555889987822999999889-9999999999999
Q ss_pred -HHCCEEEEEECCC-CHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHC
Q ss_conf -4202035640476-2146788874224--55058641266542121001111233102644236641577888998608
Q gi|254780402|r 126 -YWKPDCMILSESD-IWPLTVFELSKQR--IPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELG 201 (440)
Q Consensus 126 -~~~P~~~i~~e~E-lWPnli~~~~~~~--ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~lG 201 (440)
T Consensus 82 ~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~------PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~k~g 155 (381)
T COG0763 82 LANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS------PSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYDKFG 155 (381)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEC------CCEEEECHHHHHHHHHHHHHEEEECCCCHHHHHHCC
T ss_conf 85599889996789886499999997089998699978------530565521689999976172143677889998559
Q ss_pred CCCEEEECCCCCCCCCCCCCHHH-HHHHHHHCCCCCEEECCCCCCCCCCCCCC----CCCCCC-CCCCEEEEEEECCCCH
Q ss_conf 85058720431012344221256-89999861798617504655332100000----000001-2341248897055211
Q gi|254780402|r 202 AQKLIVSGNLKIDTESLPCDKEL-LSLYQESIAGRYTWAAISTFEGEEDKAVY----VHNFIK-CRTDVLTIIVPRHPRR 275 (440)
Q Consensus 202 ~~~i~v~GnlK~d~~~~~~~~~~-~~~~~~~~~~r~v~vagSth~~EE~~il~----a~~~l~-~~~~~~lIIvPRhpeR 275 (440)
T Consensus 156 ~~-~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vl-p~~~~~ 233 (381)
T COG0763 156 LP-CTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVL-PLVNAK 233 (381)
T ss_pred CC-EEEECCHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHH
T ss_conf 97-0896780564234434578999982899778769981688588999877899999999986589965999-568478
Q ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCCCC
Q ss_conf 47888776530010110013444446641675067652025542208206613554445458376896199499989844
Q gi|254780402|r 276 CDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVE 355 (440)
Q Consensus 276 ~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~GGhN~lEpaa~G~pVi~GP~~~ 355 (440)
T Consensus 234 ~~~~~~~~~~~-------~-----~~~~~~~~~~--~~~~~a~~~aD~al~aS------GT~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 234 YRRIIEEALKW-------E-----VAGLSLILID--GEKRKAFAAADAALAAS------GTATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred HHHHHHHHHHC-------C-----CCCCEEEEEC--CHHHHHHHHHHHHHHHC------CHHHHHHHHHCCCEEEEEECC
T ss_conf 89999998623-------3-----4576078407--45789999841899844------679999998299979999445
Q ss_pred CHH----------------------HHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-C-HH
Q ss_conf 379----------------------99999997898699579899999999995898999999999999997045-5-69
Q gi|254780402|r 356 NFR----------------------DIYRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQ-G-PL 411 (440)
Q Consensus 356 nf~----------------------e~~~~L~~~g~~~~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~-g-a~ 411 (440)
T Consensus 294 ~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~----~-~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~ 368 (381)
T COG0763 294 PITYFIAKRLVKLPYVSLPNILAGREIVPELIQED----C-TPENLARALEELLLNGDRREALKEKFRELHQYLREDPAS 368 (381)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHH----C-CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 88999999861677244368861873046777531----6-999999999998348676999999999999997589688
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999752
Q gi|254780402|r 412 KITLRSLDSYV 422 (440)
Q Consensus 412 ~~~~~~i~~~l 422 (440)
T Consensus 369 e~aA~~vl~~~ 379 (381)
T COG0763 369 EIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999874