HHsearch alignment for GI: 254780402 and conserved domain: COG1519
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=858.60 Aligned_cols=414 Identities=39% Similarity=0.670 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 999999999999999999999997418440011245405-67777888877999817899999999999999861998--
Q gi|254780402|r 9 LLGIYRWGGIFFMPFLSVSLSLYRVFNRERGRKFGERLG-YPTALRPIGPLIWFHASSVGETMALIGLIPAIRSRHVN-- 85 (440)
Q Consensus 9 ~~~lY~~~~~l~~p~~~~~~~~~~~~~k~~~~~~~eR~g-~~~~~~~~~~~IW~HaaSvGE~~~a~pli~~l~~~~~~-- 85 (440)
T Consensus 1 ~~~lY~~l~~~~~p~~~~~l~~R~~~~~~y~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ 80 (419)
T COG1519 1 LRFLYRLLLTLALPFIAPRLLYRSFKGPKYRKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRERFPDLR 80 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 90399999999989999999999740757788999871557877788888079996446678888999999997689987
Q ss_pred EEEEECCCCCCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 99996277630012101477416885055720134455744202035640476214678887422455058641266542
Q gi|254780402|r 86 VLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAVSRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRS 165 (440)
Q Consensus 86 iliT~~T~tg~~~~~~~~~~~~~~~y~P~D~~~~~~~fl~~~~P~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S 165 (440)
T Consensus 81 ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS 160 (419)
T COG1519 81 ILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRS 160 (419)
T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECHHH
T ss_conf 89995276379999987698708996576766889999974289879998001367899999876998999942302325
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEECCCCC
Q ss_conf 121001111233102644236641577888998608850587204310123442212568999986179-8617504655
Q gi|254780402|r 166 FKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAG-RYTWAAISTF 244 (440)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~lG~~~i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~-r~v~vagSth 244 (440)
T Consensus 161 ~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH 240 (419)
T COG1519 161 FARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTH 240 (419)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 77798778999999974233345488889999964986138633324237787324899999998508888559995477
Q ss_pred CCCCCCCCCCCCCC-CCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCC
Q ss_conf 33210000000000-12341248897055211478887765300101100134444466416750676520255422082
Q gi|254780402|r 245 EGEEDKAVYVHNFI-KCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEI 323 (440)
Q Consensus 245 ~~EE~~il~a~~~l-~~~~~~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~Adi 323 (440)
T Consensus 241 ~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi 320 (419)
T COG1519 241 EGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI 320 (419)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCE
T ss_conf 86388999999999963899569991587556799999999759818861378999888868999628689999734327
Q ss_pred EEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 06613554445458376896199499989844379999999978986995798999999999958989999999999999
Q gi|254780402|r 324 AFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDIYRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINE 403 (440)
Q Consensus 324 afVGGSl~~~GGhN~lEpaa~G~pVi~GP~~~nf~e~~~~L~~~g~~~~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~ 403 (440)
T Consensus 321 AFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 321 AFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred EEECCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99877446778988223787089788777513589999999866986997788999999999707889999999989999
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 9704556999999999752
Q gi|254780402|r 404 VKKMQGPLKITLRSLDSYV 422 (440)
Q Consensus 404 i~~~~ga~~~~~~~i~~~l 422 (440)
T Consensus 401 v~~~~gal~r~l~~l~~~~ 419 (419)
T COG1519 401 LAQNRGALARTLEALKPYL 419 (419)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9986779999999755119