HHsearch alignment for GI: 254780402 and conserved domain: COG1817

>COG1817 Uncharacterized protein conserved in archaea [Function unknown].
Probab=98.50  E-value=1.9e-05  Score=55.43  Aligned_cols=314  Identities=15%  Similarity=0.173  Sum_probs=180.3

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCC-CCE---EEEECCCC--------CCHHHHHHHH
Q ss_conf             79998178999999999999998619989999627763001210147-741---68850557--------2013445574
Q gi|254780402|r   58 LIWFHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLG-QYA---IHQYAPLD--------IQPAVSRFLK  125 (440)
Q Consensus        58 ~IW~HaaSvGE~~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~~-~~~---~~~y~P~D--------~~~~~~~fl~  125 (440)
T Consensus         2 kVwiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~   81 (346)
T COG1817           2 KVWIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIA   81 (346)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             37997589610238999999998578499999851275889999839970764045774478999999999999999875


Q ss_pred             HHCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCE
Q ss_conf             42020356404762146788874224550586412665421210011112331026442366415778889986088505
Q gi|254780402|r  126 YWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYKELGAQKL  205 (440)
Q Consensus       126 ~~~P~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~~lG~~~i  205 (440)
T Consensus        82 ~~kpdv~i~~~s---~~l~rvafgLg~psIi~~D~e--hA~~-------qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~  149 (346)
T COG1817          82 EFKPDVAIGKHS---PELPRVAFGLGIPSIIFVDNE--HAEA-------QNKLTLPLADVIITPEAIDEEELLDFGADPN  149 (346)
T ss_pred             HCCCCEEEECCC---CCHHHHHHHCCCCEEEECCCH--HHHH-------HHHCCHHHHHHEECCCCCCHHHHHHHCCCCC
T ss_conf             229855752278---105567765288638964875--4777-------8630002442150643443577887088955


Q ss_pred             EEECC--CCCC-CCC-CCCCHHHHHHHHHHCCCCCEEE----CCCCCC-CCCC--CCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             87204--3101-234-4221256899998617986175----046553-3210--0000000001234124889705521
Q gi|254780402|r  206 IVSGN--LKID-TES-LPCDKELLSLYQESIAGRYTWA----AISTFE-GEED--KAVYVHNFIKCRTDVLTIIVPRHPR  274 (440)
Q Consensus       206 ~v~Gn--lK~d-~~~-~~~~~~~~~~~~~~~~~r~v~v----agSth~-~EE~--~il~a~~~l~~~~~~~lIIvPRhpe  274 (440)
T Consensus       150 ~i~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~  226 (346)
T COG1817         150 KISGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKE  226 (346)
T ss_pred             CEECCCCEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCC---EEEECCCHH
T ss_conf             21135662677310267988789987588879866999643445423433222566888999887572---899557556


Q ss_pred             HHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEE-ECCCCCCCCCCHHHHHHHCCCEEEC-C
Q ss_conf             1478887765300101100134444466416750676520255422082066-1355444545837689619949998-9
Q gi|254780402|r  275 RCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFI-GRSFCASGGQNPLEAAMLGCAILSG-P  352 (440)
Q Consensus       275 R~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafV-GGSl~~~GGhN~lEpaa~G~pVi~G-P  352 (440)
T Consensus       227 ~~----eife~~~n-------~i~pk~-----~vD~---l~Lly-ya~lvig~ggTM-------arEaAlLGtpaIs~~p  279 (346)
T COG1817         227 QA----EIFEGYRN-------IIIPKK-----AVDT---LSLLY-YATLVIGAGGTM-------AREAALLGTPAISCYP  279 (346)
T ss_pred             HH----HHHHHHCC-------CCCCCC-----CCCH---HHHHH-HHHEEECCCCHH-------HHHHHHHCCCEEEECC
T ss_conf             89----98741011-------058855-----5227---87886-541564177037-------8888872883478538


Q ss_pred             C-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             8-4437999999997898699579899999999995898999999999999997045569999999997523
Q gi|254780402|r  353 N-VENFRDIYRRMVSSGAVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDSYVN  423 (440)
Q Consensus       353 ~-~~nf~e~~~~L~~~g~~~~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i~~~l~  423 (440)
T Consensus       280 Gkll~vd---k~lie~G~~~~s~~~~~~~~~a~~~l~~~~~kK-------~~~~k~e~~~~~ii~~ve~~~e  341 (346)
T COG1817         280 GKLLAVD---KYLIEKGLLYHSTDEIAIVEYAVRNLKYRRLKK-------TGVLKLEDPTRLIIDVVEEMLE  341 (346)
T ss_pred             CCCCCCC---HHHHHCCCEEECCCHHHHHHHHHHHHHCHHHCC-------CCCCCCCCHHHHHHHHHHHHHH
T ss_conf             8533223---898866843431788899999999842500023-------3442200379999999999864