HHsearch alignment for GI: 254780402 and conserved domain: COG2327
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis].
Probab=97.72 E-value=0.0048 Score=39.69 Aligned_cols=302 Identities=12% Similarity=0.125 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCH--HHHCCCCCCEEEEECCCCCCHHHHHHHHH-------------
Q ss_conf 789999999999999986199--8999962776300--12101477416885055720134455744-------------
Q gi|254780402|r 64 SSVGETMALIGLIPAIRSRHV--NVLLTTMTATSAK--VARKYLGQYAIHQYAPLDIQPAVSRFLKY------------- 126 (440)
Q Consensus 64 aSvGE~~~a~pli~~l~~~~~--~iliT~~T~tg~~--~~~~~~~~~~~~~y~P~D~~~~~~~fl~~------------- 126 (440)
T Consensus 12 gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~~p~~~~~~p~~~----~~~-l~g~~k~v~R~~~k~~~~~~il~~ 86 (385)
T COG2327 12 GNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIVDPVFLSANPEGS----AAG-LNGRVKSVLRRRLKHPGLVSILSA 86 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCCC----CHH-HHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 876459999999999985386644356504786001313552786667----203-438899999975515308999998
Q ss_pred -HCCEEEEEECCC----------CHHHH--HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf -202035640476----------21467--88874224550586412665421210011112331026442366415778
Q gi|254780402|r 127 -WKPDCMILSESD----------IWPLT--VFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERY 193 (440)
Q Consensus 127 -~~P~~~i~~e~E----------lWPnl--i~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~ 193 (440)
T Consensus 87 l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~---~~s~~~~~~~~~~~s~i~vRD~~S 163 (385)
T COG2327 87 LGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKH---PLSRQLLNYVLGGCSAISVRDPVS 163 (385)
T ss_pred HHHCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 50178899848530157656612110688999999759987999556787667---779999998856774899836875
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCC-CC-CCCC-----CCCCCCCCC-CC-CCCE
Q ss_conf 88998608850587204310123442212568999986179861750465-53-3210-----000000000-12-3412
Q gi|254780402|r 194 FRRYKELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAAIST-FE-GEED-----KAVYVHNFI-KC-RTDV 264 (440)
Q Consensus 194 ~~rl~~lG~~~i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~r~v~vagSt-h~-~EE~-----~il~a~~~l-~~-~~~~ 264 (440)
T Consensus 164 ~~llk~~gi~a~l~~-D~Af~L~~~~~~~~~~---~~~~~~~~~~i~lr~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~ 239 (385)
T COG2327 164 YELLKQLGINARLVT-DPAFLLPASSQNATAS---DVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDLVERQVKALW 239 (385)
T ss_pred HHHHHHCCCCEEEEC-CCCEECCCCCCCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 999998099837605-8402234544465521---100345537999414677515667899989999999998641044
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEE-CCC-CCCHHHHHHCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 48897055211478887765300101100134444466416750-676-5202554220820661355444545837689
Q gi|254780402|r 265 LTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLG-DTI-GEMGFYLRMTEIAFIGRSFCASGGQNPLEAA 342 (440)
Q Consensus 265 ~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~-Dt~-GeL~~lY~~AdiafVGGSl~~~GGhN~lEpa 342 (440)
T Consensus 240 ~i~~~~~~~s~d~~va~~i~~~~~------------~~~~i~~~~d~~~~~~~~~l~~~dl-~Vg~R-----~HsaI~al 301 (385)
T COG2327 240 RITLIDYGASDDLAVADAIAQLVL------------DSAEILVSSDEYAEELGGILAACDL-IVGMR-----LHSAIMAL 301 (385)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCC------------CCCCEEEECCHHHHHHHHHHCCCCE-EEEEH-----HHHHHHHH
T ss_conf 887320455421678999876438------------7200686143278898877515745-98621-----68999998
Q ss_pred HHCCCEEECCCCCCHHHHHHHHHHCCCEEEEC--CHHHHHHHHHHHHC-CHHHHHH
Q ss_conf 61994999898443799999999789869957--98999999999958-9899999
Q gi|254780402|r 343 MLGCAILSGPNVENFRDIYRRMVSSGAVRIVE--EVGTLADMVYSLLS-EPTIRYE 395 (440)
Q Consensus 343 a~G~pVi~GP~~~nf~e~~~~L~~~g~~~~v~--d~~eL~~~l~~ll~-d~~~~~~ 395 (440)
T Consensus 302 ~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 302 AFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred HCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 65997589860577789999729975222477875677899999997345877765