HHsearch alignment for GI: 254780402 and conserved domain: COG4641
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=97.88 E-value=0.0021 Score=42.10 Aligned_cols=314 Identities=13% Similarity=0.062 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHCCEEEEEECCC-----CH-HH
Q ss_conf 999999999986199899996277630012101477416885055720134-455744202035640476-----21-46
Q gi|254780402|r 70 MALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLGQYAIHQYAPLDIQPAV-SRFLKYWKPDCMILSESD-----IW-PL 142 (440)
Q Consensus 70 ~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~~~~~~~~y~P~D~~~~~-~~fl~~~~P~~~i~~e~E-----lW-Pn 142 (440)
T Consensus 18 ~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~~~~~~~~~~ 97 (373)
T COG4641 18 EYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDDQPDEESTID 97 (373)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCHHHEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEHHH
T ss_conf 64999999998565548998326277540644567656001000574789999989862874799951566644100179
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH-HHHHCCCCCCEEEECCHHH-HHHHH-HHCCCCEEEECCCCCCC-CCC
Q ss_conf 78887422455058641266542121001111-2331026442366415778-88998-60885058720431012-344
Q gi|254780402|r 143 TVFELSKQRIPQVLVNARMSRRSFKNWKTVLS-FSKKIFSQFSLVIVQSERY-FRRYK-ELGAQKLIVSGNLKIDT-ESL 218 (440)
Q Consensus 143 li~~~~~~~ip~~linarls~~S~~~~~~~~~-l~~~~~~~~~~i~~qs~~~-~~rl~-~lG~~~i~v~GnlK~d~-~~~ 218 (440)
T Consensus 98 ~~a~l~~~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l~~~~yyq~~~~~~~~~~~-~a~d~~~~~ 176 (373)
T COG4641 98 LWAWLKRKCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGLVANKYYQEGGARNCYYLP-WAVDDSLFH 176 (373)
T ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCEECCC-CCCCCHHCC
T ss_conf 9998526786269997146002466653017776105551334233126407889998762355113057-567823206
Q ss_pred CCC--HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCC-CE-EEEEEECCCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 221--256899998617986175046553321000000000-01234-12-48897055211478887765300101100
Q gi|254780402|r 219 PCD--KELLSLYQESIAGRYTWAAISTFEGEEDKAVYVHNF-IKCRT-DV-LTIIVPRHPRRCDAIERRLIAKGLKVARR 293 (440)
Q Consensus 219 ~~~--~~~~~~~~~~~~~r~v~vagSth~~EE~~il~a~~~-l~~~~-~~-~lIIvPRhpeR~~~i~~~l~~~gl~~~~~ 293 (440)
T Consensus 177 ~i~~da~~--------~~-dL~~ign~~pDr~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~---~~~~~~~~~~yIg~ 244 (373)
T COG4641 177 PIPPDASY--------DV-DLNLIGNPYPDRVEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDI---WGRTWEPNVQYIGY 244 (373)
T ss_pred CCCCCCCC--------EE-EEEEECCCCCCHHHHHHHHHHCCCHHHHCCCEEEECCCCCCHHH---HCCCCCCHHHHHHC
T ss_conf 69854130--------13-36773588855789999986152011100653455077652344---21133656666332
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHCC---------CEEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHHHHHH
Q ss_conf 13444446641675067652025542208---------206613554445458376896199499989844379999999
Q gi|254780402|r 294 SRGDVINAEVDIFLGDTIGEMGFYLRMTE---------IAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDIYRRM 364 (440)
Q Consensus 294 S~~~~~~~~~~V~i~Dt~GeL~~lY~~Ad---------iafVGGSl~~~GGhN~lEpaa~G~pVi~GP~~~nf~e~~~~L 364 (440)
T Consensus 245 --------------~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~R----vFeiagc~~~li-----T~~~~~~e~~ 301 (373)
T COG4641 245 --------------YNPKDGVPNAFKRDDVTLNINRASIANALFSPTNR----VFEIAGCGGFLI-----TDYWKDLEKF 301 (373)
T ss_pred --------------CCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCHHH----HHHHHHCCCCCC-----CCCHHHHHHH
T ss_conf --------------68500000003554435641378887614785056----888761587501-----5427889872
Q ss_pred HHCC-CEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9789-869957989999999999589899999999999999704556999999999
Q gi|254780402|r 365 VSSG-AVRIVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLD 419 (440)
Q Consensus 365 ~~~g-~~~~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i~ 419 (440)
T Consensus 302 f~pgk~~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~ 357 (373)
T COG4641 302 FKPGKDIIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLN 357 (373)
T ss_pred CCCCHHEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 59860258963789999999998448306899998669999874327888999999