HHsearch alignment for GI: 254780402 and conserved domain: PRK00025
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed.
Probab=99.50 E-value=1.2e-11 Score=96.23 Aligned_cols=332 Identities=18% Similarity=0.172 Sum_probs=199.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCC---CCC----E-------EEEECCCCCCHHHHHHH
Q ss_conf 999817899999999999999861998999962776300121014---774----1-------68850557201344557
Q gi|254780402|r 59 IWFHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYL---GQY----A-------IHQYAPLDIQPAVSRFL 124 (440)
Q Consensus 59 IW~HaaSvGE~~~a~pli~~l~~~~~~iliT~~T~tg~~~~~~~~---~~~----~-------~~~y~P~D~~~~~~~fl 124 (440)
T Consensus 4 ifi~aGE~SGD~~ga~li~~Lk~~~~~~~~~--GiGG~~M~~~G~~~l~d~~~l~vmG~~evl~~~~~~~~~~~~~~~~i 81 (382)
T PRK00025 4 IAIVAGEVSGDLLGAGLIRALKAQAPNLEFV--GIGGPRMEAAGFESLFDMEELAVMGLVEVLPRLPRLLKIRKELKRLL 81 (382)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEE--EECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999068418899999999998319896799--98829999769954477578313019999977999999999999999
Q ss_pred HHHCCEEEEEECCCCHHHH----HHHHHHC--CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf 4420203564047621467----8887422--455058641266542121001111233102644236641577888998
Q gi|254780402|r 125 KYWKPDCMILSESDIWPLT----VFELSKQ--RIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERYFRRYK 198 (440)
Q Consensus 125 ~~~~P~~~i~~e~ElWPnl----i~~~~~~--~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~~~rl~ 198 (440)
T Consensus 82 ~~~~Pd~vi~ID~---pgFnlrlak~lkk~~~~ipvi~yv~------PqvWAWr~~R~k~~~~~~D~ll~ifPFE~~~f~ 152 (382)
T PRK00025 82 LAEPPDVFILIDA---PDFNLRLAKKLKKALPGIPIIHYVS------PSVWAWRPGRAKKIAKATDHVLAILPFEAAFYD 152 (382)
T ss_pred HHCCCCEEEEECC---CHHHHHHHHHHHHHCCCCCEEEEEC------CHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 8649999999778---3065999999997169998899947------156540641899999999876108765689998
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEE-ECCCCCCCCCCCC----CCCCCCCC-CCCCEEEEEEECC
Q ss_conf 6088505872043101234422125689999861798617-5046553321000----00000001-2341248897055
Q gi|254780402|r 199 ELGAQKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTW-AAISTFEGEEDKA----VYVHNFIK-CRTDVLTIIVPRH 272 (440)
Q Consensus 199 ~lG~~~i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~r~v~-vagSth~~EE~~i----l~a~~~l~-~~~~~~lIIvPRh 272 (440)
T Consensus 153 ~~g~~-~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~EI~~~lPi~l~a~~~l~~~~p~~~fvi-p~~ 230 (382)
T PRK00025 153 KLGVP-VTYVGHPLADEIPLEPDRAAARAELGLDPDARVLALLPGSRGSEIKRLLPTFLEAAQLLQQRYPDLRFVV-PLA 230 (382)
T ss_pred HCCCC-CEECCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECC
T ss_conf 65998-1356981564322356879999873998556617870588589999978999999999998789939999-558
Q ss_pred CCHH-HHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCEEEC
Q ss_conf 2114-788877653001011001344444664167506765202554220820661355444545837689619949998
Q gi|254780402|r 273 PRRC-DAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSG 351 (440)
Q Consensus 273 peR~-~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~GGhN~lEpaa~G~pVi~G 351 (440)
T Consensus 231 ~~~~~~~i~~~~~~~~~-------------~~~i~~~--~~~~~~~l~~sd~ai~~S------GTaTLE~al~~~P~Vv~ 289 (382)
T PRK00025 231 NPKRREQFEQLLAEYAP-------------DLSVTLL--DGQAREAMAAADAALAAS------GTVTLEAALLGVPMVVG 289 (382)
T ss_pred CHHHHHHHHHHHHHCCC-------------CCCEEEE--CCCCHHHHHHCCEEEECC------CHHHHHHHHHCCCEEEE
T ss_conf 87789999999984799-------------9838982--684177887388876537------77999999971985899
Q ss_pred CCCCCHHH-HHHHHHHCCCEEEEC----------------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-CCCHHHH
Q ss_conf 98443799-999999789869957----------------98999999999958989999999999999970-4556999
Q gi|254780402|r 352 PNVENFRD-IYRRMVSSGAVRIVE----------------EVGTLADMVYSLLSEPTIRYEMINAAINEVKK-MQGPLKI 413 (440)
Q Consensus 352 P~~~nf~e-~~~~L~~~g~~~~v~----------------d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~-~~ga~~~ 413 (440)
T Consensus 290 Yk~~~lt~~i~k~lvkv~~isL~Nii~~k~ivPEllQ~~~~~~~i~~~~~~ll~d~~~~~~~~~~~~~lr~~L~~gas~r 369 (382)
T PRK00025 290 YKVKPLTFWIAKRLVKVPYISLPNLLAGEELVPELLQEEATPEKLARALLELLADGARRQALLEGFTELHQYLRCGAAER 369 (382)
T ss_pred EECCHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 80789999999996569976524875499766134056699999999999996699999999999999999857899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999975237
Q gi|254780402|r 414 TLRSLDSYVNP 424 (440)
Q Consensus 414 ~~~~i~~~l~~ 424 (440)
T Consensus 370 aA~~Il~~l~~ 380 (382)
T PRK00025 370 AAQAVLELLKQ 380 (382)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999973