HHsearch alignment for GI: 254780402 and conserved domain: TIGR03568
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.23 E-value=5.9e-09 Score=78.49 Aligned_cols=324 Identities=15% Similarity=0.169 Sum_probs=179.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCC-CC-EEEEECCC----CCC---HHHHCCCCC-CEEEEECCCCCCH----------
Q ss_conf 9998178999999999999998619-98-99996277----630---012101477-4168850557201----------
Q gi|254780402|r 59 IWFHASSVGETMALIGLIPAIRSRH-VN-VLLTTMTA----TSA---KVARKYLGQ-YAIHQYAPLDIQP---------- 118 (440)
Q Consensus 59 IW~HaaSvGE~~~a~pli~~l~~~~-~~-iliT~~T~----tg~---~~~~~~~~~-~~~~~y~P~D~~~---------- 118 (440)
T Consensus 3 I~~v~GtRpe~iklapli~~l~~~~~~~~~li~TGqH~~~~~g~t~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR03568 3 ICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSMGLTI 82 (365)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99998507729999999999972899888999907778411070899999757987655765456898533999999999
Q ss_pred -HHHHHHHHHCCEEEEEECCCCHHHHH--HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-CEEEECCHHHH
Q ss_conf -34455744202035640476214678--887422455058641266542121001111233102644-23664157788
Q gi|254780402|r 119 -AVSRFLKYWKPDCMILSESDIWPLTV--FELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQF-SLVIVQSERYF 194 (440)
Q Consensus 119 -~~~~fl~~~~P~~~i~~e~ElWPnli--~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~-~~i~~qs~~~~ 194 (440)
T Consensus 83 ~~~~~~l~~~kPD~VlV~-GDt~stla~alaA~~~~Ipv~HveaGl--rs~~~~---dE~~R~~i~~lS~~hf~~t~~a~ 156 (365)
T TIGR03568 83 IGFSDAFERLKPDLVVVL-GDRFEMLAAAIAAALLNIPIAHIHGGE--VTEGAI---DESIRHAITKLSHLHFVATEEYR 156 (365)
T ss_pred HHHHHHHHHCCCCEEEEE-CCCCHHHHHHHHHHHHCCEEEEEECCC--CCCCCC---CHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999854399899994-898607799999998198189996786--458988---65888898998777732335788
Q ss_pred HHHHHHCC--CCEEEECCCCCCCCCCCC--CHHHH-HHHHHHCCCCCEEECCCCCC----CCC--CCCCCCCCCCCCCCC
Q ss_conf 89986088--505872043101234422--12568-99998617986175046553----321--000000000012341
Q gi|254780402|r 195 RRYKELGA--QKLIVSGNLKIDTESLPC--DKELL-SLYQESIAGRYTWAAISTFE----GEE--DKAVYVHNFIKCRTD 263 (440)
Q Consensus 195 ~rl~~lG~--~~i~v~GnlK~d~~~~~~--~~~~~-~~~~~~~~~r~v~vagSth~----~EE--~~il~a~~~l~~~~~ 263 (440)
T Consensus 157 ~nL~~eG~~~~~I~~vGn~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~Lv--T~Hp~~~~~~~~~~~l~~il~al~~~~~ 234 (365)
T TIGR03568 157 QRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALV--TFHPVTLEKESAEEQIKELLKALDELNK 234 (365)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEE--EECCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99986247867089827718999862221378899987412136876999--9535325665689999999999972088
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCC--HHHHHHCCCEEEECCCCCCCCCCHHHH
Q ss_conf 248897055211478887765300101100134444466416750676520--255422082066135544454583768
Q gi|254780402|r 264 VLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEM--GFYLRMTEIAFIGRSFCASGGQNPLEA 341 (440)
Q Consensus 264 ~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL--~~lY~~AdiafVGGSl~~~GGhN~lEp 341 (440)
T Consensus 235 ~~~~i~Pn~d~~~~~i~~~i~~~~~------------~~~ni~~i~pl~y~~fl~ll~~a~-~vitdS---sggi~--Ea 296 (365)
T TIGR03568 235 NYIFTYPNADAGSRIINEAIEEYVN------------EHPNFRLFKSLGQERYLSLLKNAD-AVIGNS---SSGII--EA 296 (365)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHC------------CCCCEEEECCCCHHHHHHHHHHCC-EEEECC---CCCEE--EE
T ss_conf 8179826986027889999999970------------799889966788899999998701-999858---86546--70
Q ss_pred HHHCCCEEE-CCCCCCHHHHHHHHHHCCCEE-EECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 961994999-898443799999999789869-95798999999999958989999999999999970455699999999
Q gi|254780402|r 342 AMLGCAILS-GPNVENFRDIYRRMVSSGAVR-IVEEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSL 418 (440)
Q Consensus 342 aa~G~pVi~-GP~~~nf~e~~~~L~~~g~~~-~v~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i 418 (440)
T Consensus 297 ~~l~~P~i~i~~R----q~~---r~~~~nvi~v~~~~~~I~~ai~~~~-~~~~~~~~~~~-~npyG-DG~as~rIv~iL 365 (365)
T TIGR03568 297 PSFGVPTINIGTR----QKG---RLRADSVIDVDPDKEEIVKAIEKLL-DPAFKKSLKNV-KNPYG-DGNSSERIIEIL 365 (365)
T ss_pred CCCCCCEEEECCC----CCC---CCCCCEEEEECCCHHHHHHHHHHHH-CHHHHHHHHCC-CCCCC-CCHHHHHHHHHC
T ss_conf 1049867883788----555---5247608981799999999999974-87898755308-99896-998999999869