HHsearch alignment for GI: 254780402 and conserved domain: TIGR03590
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.65 E-value=6.4e-06 Score=58.54 Aligned_cols=259 Identities=13% Similarity=0.037 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHCCCCCCEEE--EECCCCCCHHHHHHHHHHCCEEEEEECCCCH
Q ss_conf 89999999999999986199899996277630--0121014774168--8505572013445574420203564047621
Q gi|254780402|r 65 SVGETMALIGLIPAIRSRHVNVLLTTMTATSA--KVARKYLGQYAIH--QYAPLDIQPAVSRFLKYWKPDCMILSESDIW 140 (440)
Q Consensus 65 SvGE~~~a~pli~~l~~~~~~iliT~~T~tg~--~~~~~~~~~~~~~--~y~P~D~~~~~~~fl~~~~P~~~i~~e~ElW 140 (440)
T Consensus 14 G~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vIiD~y~~~ 93 (280)
T TIGR03590 14 GLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLILSAGFPVYVLPDTSSWQDDALELINLLEKEKFDILIVDHYALD 93 (280)
T ss_pred EHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 32089999999999998899499999279588999999759817981675652012999999997379799999259999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCH-HHHHHHHHHCCCC-EEEECCCCCCCCCC
Q ss_conf 467888742245505864126654212100111123310264423664157-7888998608850-58720431012344
Q gi|254780402|r 141 PLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSE-RYFRRYKELGAQK-LIVSGNLKIDTESL 218 (440)
Q Consensus 141 Pnli~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~-~~~~rl~~lG~~~-i~v~GnlK~d~~~~ 218 (440)
T Consensus 94 ~~~~~~lk~~~~~~i~iDD~~-~~~---------~~------~d~vin~~~~~~~~~y~~~~~~~~~~l~G-~~Y~~lr~ 156 (280)
T TIGR03590 94 ADWEKLIKHFGRKLLVIDDLA-DRP---------HD------CDLLLDQNPGADALDYQGLVPANCRLLLG-PSYALLRE 156 (280)
T ss_pred HHHHHHHHHHCCEEEEEECCC-CCC---------CC------CCEEECCCCCCCHHHHCCCCCCCCEEEEC-CCCCCCCH
T ss_conf 799999998398399993676-546---------56------14254145444756636448867669865-75343578
Q ss_pred CCCHHHHHHHHHHCCCCCE-EECCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCC
Q ss_conf 2212568999986179861-75046553321-000000000012341248897055211478887765300101100134
Q gi|254780402|r 219 PCDKELLSLYQESIAGRYT-WAAISTFEGEE-DKAVYVHNFIKCRTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRG 296 (440)
Q Consensus 219 ~~~~~~~~~~~~~~~~r~v-~vagSth~~EE-~~il~a~~~l~~~~~~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~ 296 (440)
T Consensus 157 ~F~~-~~~~~~~~~~~~~Ili~~GGsD~~~lt~~il~~l~~~~~~~~i~vvig~~~~~-~~~i~~~~~~~---------- 224 (280)
T TIGR03590 157 EFYQ-LRTANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPN-LDELKKFAKEY---------- 224 (280)
T ss_pred HHHH-HHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-HHHHHHHHHHC----------
T ss_conf 8876-30322103655328999778770008999999998516685679998679876-69999999728----------
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHHHHHH
Q ss_conf 44446641675067652025542208206613554445458376896199499989844379999999
Q gi|254780402|r 297 DVINAEVDIFLGDTIGEMGFYLRMTEIAFIGRSFCASGGQNPLEAAMLGCAILSGPNVENFRDIYRRM 364 (440)
Q Consensus 297 ~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGGSl~~~GGhN~lEpaa~G~pVi~GP~~~nf~e~~~~L 364 (440)
T Consensus 225 ----~--~~~~~~~~~~m~~~m~~aDlaI~agG------~t~~El~~~gvP~i~i~~adNQ~~~a~~l 280 (280)
T TIGR03590 225 ----P--NIILFIDVENMAELMNEADLAIGAAG------STSWERCCLGLPSLSIVLAENQQSNSQQL 280 (280)
T ss_pred ----C--CEEEECCHHHHHHHHHHCCEEEECCC------HHHHHHHHHCCCEEEEEECCCHHHHHHHC
T ss_conf ----9--96996598899999997799998596------58999999499989999702569998509