HHsearch alignment for GI: 254780402 and conserved domain: pfam04413
>pfam04413 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family.
Probab=100.00 E-value=0 Score=375.52 Aligned_cols=179 Identities=42% Similarity=0.752 Sum_probs=168.6
Q ss_pred CHHHHHHHHCCCCC--CCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHCCCCCCEEEEECC
Q ss_conf 00112454056777--788887799981789999999999999986199--89999627763001210147741688505
Q gi|254780402|r 38 RGRKFGERLGYPTA--LRPIGPLIWFHASSVGETMALIGLIPAIRSRHV--NVLLTTMTATSAKVARKYLGQYAIHQYAP 113 (440)
Q Consensus 38 ~~~~~~eR~g~~~~--~~~~~~~IW~HaaSvGE~~~a~pli~~l~~~~~--~iliT~~T~tg~~~~~~~~~~~~~~~y~P 113 (440)
T Consensus 1 ~~~~~~eR~g~~~~~~~~~~~~~IWiHaaSvGE~~~~~~li~~l~~~~p~~~iliT~~T~sg~~~~~~~~~~~~~~~ylP 80 (186)
T pfam04413 1 YRKRLRERFGFASPPPPQGGGPLIWLHAASVGEVLAALPLIEALKARYPGLRILVTTTTPTGAELARKLLPDRVIHQYLP 80 (186)
T ss_pred CCCHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECC
T ss_conf 90224776688888888999988999839889999999999999986899629998358169999998678980799777
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf 57201344557442020356404762146788874224550586412665421210011112331026442366415778
Q gi|254780402|r 114 LDIQPAVSRFLKYWKPDCMILSESDIWPLTVFELSKQRIPQVLVNARMSRRSFKNWKTVLSFSKKIFSQFSLVIVQSERY 193 (440)
Q Consensus 114 ~D~~~~~~~fl~~~~P~~~i~~e~ElWPnli~~~~~~~ip~~linarls~~S~~~~~~~~~l~~~~~~~~~~i~~qs~~~ 193 (440)
T Consensus 81 ~D~~~~~~~fl~~~~P~~~i~~e~EiWPnli~~~~~~~ip~~linar~s~~s~~~~~~~~~~~~~~l~~~~~i~~qs~~~ 160 (186)
T pfam04413 81 LDLPGAVRRFLKHWRPDLLVIVETELWPNLIAAAKKRGIPVVLVNARLSERSARRYRRFPGLFRPLLRRFDLILAQSEED 160 (186)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHH
T ss_conf 67779999999985998899986132099999999879999999777686422268889999999998459999689999
Q ss_pred HHHHHHHCCC--CEEEECCCCCCCC
Q ss_conf 8899860885--0587204310123
Q gi|254780402|r 194 FRRYKELGAQ--KLIVSGNLKIDTE 216 (440)
Q Consensus 194 ~~rl~~lG~~--~i~v~GnlK~d~~ 216 (440)
T Consensus 161 ~~r~~~lG~~~~~v~v~GnlKfd~~ 185 (186)
T pfam04413 161 AERFRALGAPPDRVEVTGNLKFDAA 185 (186)
T ss_pred HHHHHHCCCCHHHEEEECCCCCCCC
T ss_conf 9999984998357899187766789