HHsearch results for GI: 254780402 and protein with PDBid: 1v4v_A
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.45 E-value=6.9e-11 Score=89.74 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=191.2
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHC-CCCE-EEEECCCCCCHHHHC---CCC-CCEEEEECCCCC----------CHHHH
Q ss_conf 7999817899999999999999861-9989-999627763001210---147-741688505572----------01344
Q gi|254780402|r 58 LIWFHASSVGETMALIGLIPAIRSR-HVNV-LLTTMTATSAKVARK---YLG-QYAIHQYAPLDI----------QPAVS 121 (440)
Q Consensus 58 ~IW~HaaSvGE~~~a~pli~~l~~~-~~~i-liT~~T~tg~~~~~~---~~~-~~~~~~y~P~D~----------~~~~~ 121 (440)
.|-+=..+-.|+--..||+++|++. +.++ ++-|. +-++...+ .+. ..+...-.+.+. .....
T Consensus 7 kI~~v~GtR~e~~k~~pl~~~l~~~~~~~~~li~tG--~H~~~~~~~~~~~gi~~d~~~~~~~~~~~~~~~~~~~~~~~~ 84 (376)
T 1v4v_A 7 RVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTG--QHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQAA 84 (376)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECS--SCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 899999701849999999999972899988999826--885667471134099766567888888889999999999999
Q ss_pred HHHHHHCCEEEEEECCCCHHHHH--HHHHHCCCCEEEEEECCCCCCCCCCHHHH-HHHHHCCCCC-CEEEECCHHHHHHH
Q ss_conf 55744202035640476214678--88742245505864126654212100111-1233102644-23664157788899
Q gi|254780402|r 122 RFLKYWKPDCMILSESDIWPLTV--FELSKQRIPQVLVNARMSRRSFKNWKTVL-SFSKKIFSQF-SLVIVQSERYFRRY 197 (440)
Q Consensus 122 ~fl~~~~P~~~i~~e~ElWPnli--~~~~~~~ip~~linarls~~S~~~~~~~~-~l~~~~~~~~-~~i~~qs~~~~~rl 197 (440)
++++..+||+++.. +|-.=.+. -.+..++||++-+-|-+ +|+.-...++ ...|....++ |..+|.++.+++|+
T Consensus 85 ~il~~~kpD~Vlv~-GDr~~~la~a~aa~~~~ipi~HiegG~--rsg~~~~~~~ee~~R~~i~~ls~~hf~~~~~~~~~L 161 (376)
T 1v4v_A 85 RALKEMGADYVLVH-GDTLTTFAVAWAAFLEGIPVGHVEAGL--RSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANL 161 (376)
T ss_dssp HHHHHTTCSEEEEE-SSCHHHHHHHHHHHHTTCCEEEETCCC--CCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHH
T ss_pred HHHHCCCCCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHH
T ss_conf 99740599989996-897079999999986297479866176--666667663466562221433417762668899999
Q ss_pred HHHCC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCC----CCCCCCCC-CCCCCEEEEEEE
Q ss_conf 86088--505872043101234422125689999861798617504655332100----00000000-123412488970
Q gi|254780402|r 198 KELGA--QKLIVSGNLKIDTESLPCDKELLSLYQESIAGRYTWAAISTFEGEEDK----AVYVHNFI-KCRTDVLTIIVP 270 (440)
Q Consensus 198 ~~lG~--~~i~v~GnlK~d~~~~~~~~~~~~~~~~~~~~r~v~vagSth~~EE~~----il~a~~~l-~~~~~~~lIIvP 270 (440)
.+.|. ++|.++||+-.|........ .........++ ++....|+.|..- +.++.+.+ ...++ ..++.|
T Consensus 162 ~~~G~~~~~I~~vG~p~iD~i~~~~~~---~~~~~~~~~~~-~~lvt~H~~~n~~~~~~~~~~~~~~~~~~~~-~~~i~~ 236 (376)
T 1v4v_A 162 LKEGKREEGILVTGQTGVDAVLLAAKL---GRLPEGLPEGP-YVTVTMHRRENWPLLSDLAQALKRVAEAFPH-LTFVYP 236 (376)
T ss_dssp HTTTCCGGGEEECCCHHHHHHHHHHHH---CCCCTTCCSSC-EEEECCCCGGGGGGHHHHHHHHHHHHHHCTT-SEEEEE
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHH---HHCHHHHCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHCCC-CCEEEC
T ss_conf 860667762998176248889999986---30123304443-1589842555410488999999999864666-622313
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHCCCEEEEC-CCCCCCCCCHHHHHHHCCCEE
Q ss_conf 5521147888776530010110013444446641675067652025542208206613-554445458376896199499
Q gi|254780402|r 271 RHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMGFYLRMTEIAFIGR-SFCASGGQNPLEAAMLGCAIL 349 (440)
Q Consensus 271 RhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~~lY~~AdiafVGG-Sl~~~GGhN~lEpaa~G~pVi 349 (440)
.|+.... .....+. .....++.+++.+|....++-+....+|.| | .|| ..||+++|+|+|
T Consensus 237 ~~~~~~~--~~~~~~~------------~~~~~ni~~i~~l~~~~~l~ll~~s~~vignS---ss~--i~Ea~~lg~P~I 297 (376)
T 1v4v_A 237 VHLNPVV--REAVFPV------------LKGVRNFVLLDPLEYGSMAALMRASLLLVTDS---GGL--QEEGAALGVPVV 297 (376)
T ss_dssp CCSCHHH--HHHHHHH------------HTTCTTEEEECCCCHHHHHHHHHTEEEEEESC---HHH--HHHHHHTTCCEE
T ss_pred CCCCHHH--HHHHHHH------------HHCCCCCEEECCCCHHHHHHHHHHCEEEECCC---CHH--HHHHHHHCCCEE
T ss_conf 5762123--5677776------------51334201314754788999876321897178---219--999998199789
Q ss_pred ECCCCCCHHHHHHHHHHCCCEEEE-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 989844379999999978986995-79899999999995898999999999999997045569999999997523
Q gi|254780402|r 350 SGPNVENFRDIYRRMVSSGAVRIV-EEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLRSLDSYVN 423 (440)
Q Consensus 350 ~GP~~~nf~e~~~~L~~~g~~~~v-~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~~i~~~l~ 423 (440)
.=-....-++. .+.|....| .|++++.+++..+++|+..+..|.+.- +.. -...|++|+++.|..||+
T Consensus 298 ~ir~~~eRqeg----~~~g~~~lv~~d~~~I~~~i~~~l~~~~~~~~~~~~~-npY-GdG~as~rI~~~L~~~l~ 366 (376)
T 1v4v_A 298 VLRNVTERPEG----LKAGILKLAGTDPEGVYRVVKGLLENPEELSRMRKAK-NPY-GDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp ECSSSCSCHHH----HHHTSEEECCSCHHHHHHHHHHHHTCHHHHHHHHHSC-CSS-CCSCHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHH----HHCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCC-CCC-CCCHHHHHHHHHHHHHHC
T ss_conf 81787668889----9739038737999999999999970989887510278-989-898799999999999858