HHsearch results for GI: 254780402 and protein with PDBid: 3dzc_A

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae}
Probab=99.27  E-value=1.9e-09  Score=80.30  Aligned_cols=329  Identities=14%  Similarity=0.137  Sum_probs=188.7

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHCC-CCE-EEEECCCCCCHHHHCCC---CCCEEEEECCC----CCC--------HHH
Q ss_conf             79998178999999999999998619-989-99962776300121014---77416885055----720--------134
Q gi|254780402|r   58 LIWFHASSVGETMALIGLIPAIRSRH-VNV-LLTTMTATSAKVARKYL---GQYAIHQYAPL----DIQ--------PAV  120 (440)
Q Consensus        58 ~IW~HaaSvGE~~~a~pli~~l~~~~-~~i-liT~~T~tg~~~~~~~~---~~~~~~~y~P~----D~~--------~~~  120 (440)
                      -|.+=..+-.|+--..||+++|.++. .++ ++-|  -+-+++..+.+   .-... ..+.+    |..        ...
T Consensus        27 KI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~T--GqH~d~~~~~~~~~~i~~d-~~~~~~~~~~s~~~~~~~~i~~~  103 (396)
T 3dzc_A           27 KVLIVFGTRPEAIKMAPLVQQLCQDNRFVAKVCVT--GQHREMLDQVLELFSITPD-FDLNIMEPGQTLNGVTSKILLGM  103 (396)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHHHHCTTEEEEEEEC--CSSSHHHHHHHHHTTCCCS-EECCCCCTTCCHHHHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHHHHHHHHHCCCCCC-EEECCCCCCCCHHHHHHHHHHHH
T ss_conf             18999970370999999999997389987799990--8998899999985498887-32215889998999999999999


Q ss_pred             HHHHHHHCCEEEEEECCCCHHHHHH--HHHHCCCCEEEEEECCCCCCCCCCHHHH-HHHHHCCCCC-CEEEECCHHHHHH
Q ss_conf             4557442020356404762146788--8742245505864126654212100111-1233102644-2366415778889
Q gi|254780402|r  121 SRFLKYWKPDCMILSESDIWPLTVF--ELSKQRIPQVLVNARMSRRSFKNWKTVL-SFSKKIFSQF-SLVIVQSERYFRR  196 (440)
Q Consensus       121 ~~fl~~~~P~~~i~~e~ElWPnli~--~~~~~~ip~~linarls~~S~~~~~~~~-~l~~~~~~~~-~~i~~qs~~~~~r  196 (440)
                      .+++...+||++++. +|-.=-+-.  .|...+||++-+-|-.  +|+..+.-++ -..|.+..++ +..+|.++.+++|
T Consensus       104 ~~~~~~~kpD~VlV~-GDr~e~la~a~aa~~~~ipi~HiegG~--rs~~~~~~~pde~~R~~isklS~lhf~~te~~~~~  180 (396)
T 3dzc_A          104 QQVLSSEQPDVVLVH-GDTATTFAASLAAYYQQIPVGHVEAGL--RTGNIYSPWPEEGNRKLTAALTQYHFAPTDTSRAN  180 (396)
T ss_dssp             HHHHHHHCCSEEEEE-TTSHHHHHHHHHHHTTTCCEEEETCCC--CCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHH
T ss_pred             HHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHCCCEEEEEECC--CCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf             999997199999995-888622548999998299789997126--54688779826776632354204995153568999


Q ss_pred             HHHHCC--CCEEEECCCCCCCCCCCCC-----HHHHHHHHHHC---CCCCEEECCCCCCCCC--C---CCCCCC-CCCCC
Q ss_conf             986088--5058720431012344221-----25689999861---7986175046553321--0---000000-00012
Q gi|254780402|r  197 YKELGA--QKLIVSGNLKIDTESLPCD-----KELLSLYQESI---AGRYTWAAISTFEGEE--D---KAVYVH-NFIKC  260 (440)
Q Consensus       197 l~~lG~--~~i~v~GnlK~d~~~~~~~-----~~~~~~~~~~~---~~r~v~vagSth~~EE--~---~il~a~-~~l~~  260 (440)
                      +.++|.  ++|.++|++-.|.......     ......+....   ....-++....|+.|-  +   ....+. ..+..
T Consensus       181 L~~~G~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvt~Hr~~n~~~~~~~~~~~~~~~~~~  260 (396)
T 3dzc_A          181 LLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQ  260 (396)
T ss_dssp             HHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98707885444011443077899887640342676666765434435678779997362102205899999999999862


Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEEECCCCCCH--HHHHHCCCEEEECCCCCCCCCCH
Q ss_conf             3412488970552114788877653001011001344444664167506765202--55422082066135544454583
Q gi|254780402|r  261 RTDVLTIIVPRHPRRCDAIERRLIAKGLKVARRSRGDVINAEVDIFLGDTIGEMG--FYLRMTEIAFIGRSFCASGGQNP  338 (440)
Q Consensus       261 ~~~~~lIIvPRhpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~V~i~Dt~GeL~--~lY~~AdiafVGGSl~~~GGhN~  338 (440)
                      ..+ ..|+.|-|+....  .......            ......+.+++.+|-+.  .+.+.|+ +.+|-|   .||  .
T Consensus       261 ~~~-~~ii~p~~~~~~~--~~~~~~~------------~~~~~ni~~i~~l~~~~fl~ll~~a~-~vIgnS---ssg--~  319 (396)
T 3dzc_A          261 HPE-CQILYPVHLNPNV--REPVNKL------------LKGVSNIVLIEPQQYLPFVYLMDRAH-IILTDS---GGI--Q  319 (396)
T ss_dssp             CTT-EEEEEECCBCHHH--HHHHHHH------------TTTCTTEEEECCCCHHHHHHHHHHCS-EEEESC---SGG--G
T ss_pred             CCC-CCEEEECCCCCCH--HHHHHHH------------HHCCCCCEECCCCCHHHHHHHHHHCE-EEECCC---HHH--H
T ss_conf             645-6503313678513--5678988------------62465540058876899999985035-887364---557--8


Q ss_pred             HHHHHHCCCEEEC-CCCCCHHHHHHHHHHCCCEEEE-CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             7689619949998-9844379999999978986995-7989999999999589899999999999999704556999999
Q gi|254780402|r  339 LEAAMLGCAILSG-PNVENFRDIYRRMVSSGAVRIV-EEVGTLADMVYSLLSEPTIRYEMINAAINEVKKMQGPLKITLR  416 (440)
Q Consensus       339 lEpaa~G~pVi~G-P~~~nf~e~~~~L~~~g~~~~v-~d~~eL~~~l~~ll~d~~~~~~~~~~a~~~i~~~~ga~~~~~~  416 (440)
                      .||..+|+|+|.- ..+. .++   . .+.|....| .|.+++.+++...++++..+..+.+. .+.. -..+|++|+++
T Consensus       320 ~EA~~lg~P~Inir~~te-r~e---~-v~~~~~ilv~~d~~~I~~ai~~~l~~~~~~~~~~~~-~npY-GdG~as~rIv~  392 (396)
T 3dzc_A          320 EEAPSLGKPVLVMRETTE-RPE---A-VAAGTVKLVGTNQQQICDALSLLLTDPQAYQAMSQA-HNPY-GDGKACQRIAD  392 (396)
T ss_dssp             TTGGGGTCCEEECCSSCS-CHH---H-HHHTSEEECTTCHHHHHHHHHHHHHCHHHHHHHHTS-CCTT-CCSCHHHHHHH
T ss_pred             HHHHHHCCCEEECCCCCC-CCC---C-CCCCCEEECCCCHHHHHHHHHHHHCCHHHHHHCCCC-CCCC-CCCHHHHHHHH
T ss_conf             889872898896577665-710---2-017806977899999999999996398888630547-8989-79859999999


Q ss_pred             HHHH
Q ss_conf             9997
Q gi|254780402|r  417 SLDS  420 (440)
Q Consensus       417 ~i~~  420 (440)
                      .|++
T Consensus       393 iL~k  396 (396)
T 3dzc_A          393 ILAK  396 (396)
T ss_dssp             HHHC
T ss_pred             HHCC
T ss_conf             9639