Query gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 80
No_of_seqs 100 out of 110
Neff 3.5
Searched_HMMs 23785
Date Mon May 30 10:16:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780403.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x60_A Sporulation-specific N- 56.9 6.2 0.00026 20.0 2.7 25 34-58 48-72 (79)
2 1uta_A FTSN, MSGA, cell divisi 48.2 8 0.00034 19.4 2.1 29 34-62 48-76 (81)
3 2od4_A Hypothetical protein; J 36.7 21 0.00087 17.1 2.8 35 32-67 56-92 (101)
4 1vps_A Polyomavirus VP1 pentam 30.2 1.2 5.3E-05 24.0 -4.3 31 31-70 250-280 (289)
5 3e02_A Uncharacterized protein 25.7 22 0.00093 16.9 1.4 25 43-79 36-60 (311)
6 2uz9_A Guanine deaminase; zinc 20.2 52 0.0022 14.8 3.1 56 11-66 31-97 (476)
7 2fiu_A Conserved hypothetical 19.4 54 0.0023 14.7 2.6 52 12-67 38-94 (99)
8 1hbk_A ACBP, acyl-COA binding 16.3 23 0.00095 16.8 -0.2 29 37-65 48-77 (89)
9 2kgs_A Uncharacterized protein 15.7 67 0.0028 14.2 2.1 23 28-51 14-36 (132)
10 3epy_A Acyl-COA-binding domain 15.4 20 0.00082 17.2 -0.7 19 46-64 58-76 (89)
No 1
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=56.90 E-value=6.2 Score=20.05 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCHH
Q ss_conf 0981488989999999999764873
Q gi|254780403|r 34 DVVGIFSSYSNAYDVWKEKSQQMVD 58 (80)
Q Consensus 34 eivG~f~~Y~~A~~AWka~Aq~TVD 58 (80)
-++|||.++++|..+.+.......|
T Consensus 48 V~vGpf~~~~~A~~~~~~lk~~g~~ 72 (79)
T 1x60_A 48 VQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9996769999999999999983997
No 2
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=48.17 E-value=8 Score=19.43 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=22.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCHHHCCC
Q ss_conf 09814889899999999997648731021
Q gi|254780403|r 34 DVVGIFSSYSNAYDVWKEKSQQMVDNALM 62 (80)
Q Consensus 34 eivG~f~~Y~~A~~AWka~Aq~TVDnA~m 62 (80)
-++|||++.++|..+=......-+.+|-.
T Consensus 48 V~vGpf~~~~~A~~~~~~L~~~G~~~~i~ 76 (81)
T 1uta_A 48 VVIGPVKGKENADSTLNRLKMAGHTNCIR 76 (81)
T ss_dssp EEESSCBTTTHHHHHHHHHHHHCCSCCBC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99877399999999999999879998699
No 3
>2od4_A Hypothetical protein; JCVI_PEP_1096665735785, metagenomics, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Uncultured marine organism} SCOP: d.58.4.20
Probab=36.74 E-value=21 Score=17.06 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCHH--HCCCEEEEE
Q ss_conf 320981488989999999999764873--102126766
Q gi|254780403|r 32 DIDVVGIFSSYSNAYDVWKEKSQQMVD--NALMRYFVV 67 (80)
Q Consensus 32 ~~eivG~f~~Y~~A~~AWka~Aq~TVD--nA~mRYfIv 67 (80)
+.=++..|||.++|.++|...... ++ +...+.-|.
T Consensus 56 ~~~~I~~fpdK~tAdk~~~~~~~~-~~eik~g~Kiei~ 92 (101)
T 2od4_A 56 SGMYIIHYPDKQTAISVFDKIKPE-VDEVRTQNRIQIT 92 (101)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHH-HHHHHHHSEEEEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHH-HHHHHCCCCEEEE
T ss_conf 599999938878999999998999-9998636828996
No 4
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, sialic acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=30.16 E-value=1.2 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=14.4
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCHHHCCCEEEEEEHH
Q ss_conf 7320981488989999999999764873102126766723
Q gi|254780403|r 31 DDIDVVGIFSSYSNAYDVWKEKSQQMVDNALMRYFVVDIS 70 (80)
Q Consensus 31 ~~~eivG~f~~Y~~A~~AWka~Aq~TVDnA~mRYfIvhlh 70 (80)
+..|++|.|.+..+....|| ..-|||=|||-
T Consensus 250 s~aDi~G~~~~~~~~~~~~r---------GlpRyF~v~lR 280 (289)
T 1vps_A 250 SCVDIMGWRVTRNYDVHHWR---------GLPRYFKITLR 280 (289)
T ss_dssp EEEEEEEEEECSSTTCEEEE---------ECCEEEEEEEE
T ss_pred EHHHHCCCEECCCCCCCCEE---------CCCCEEEEEEE
T ss_conf 80261272120566410000---------77725799987
No 5
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=25.72 E-value=22 Score=16.91 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHCHHHCCCEEEEEEHHHCCCCHHCC
Q ss_conf 9999999999764873102126766723218812048
Q gi|254780403|r 43 SNAYDVWKEKSQQMVDNALMRYFVVDISRFPHYELGK 79 (80)
Q Consensus 43 ~~A~~AWka~Aq~TVDnA~mRYfIvhlhrl~dp~~~k 79 (80)
++|.+||++=|. |||+| -+||+.|+
T Consensus 36 ~~a~~c~~AGAs-----------ivH~H-~Rd~~dG~ 60 (311)
T 3e02_A 36 KEGVAAAEAGAA-----------MLHLH-ARDPLNGR 60 (311)
T ss_dssp HHHHHHHHHTCS-----------EEEEC-EECTTTCC
T ss_pred HHHHHHHHHCCC-----------EEEEE-ECCCCCCC
T ss_conf 999999982673-----------89988-53799989
No 6
>2uz9_A Guanine deaminase; zinc, hydrolase, purine metabolism, guanine aminohydrolase; HET: XAN; 2.3A {Homo sapiens} SCOP: b.92.1.4 c.1.9.9 PDB: 3e0l_A
Probab=20.23 E-value=52 Score=14.79 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.2
Q ss_pred EEEEEEEEEECCCCC-----------EECCCCCCEEEECCCCHHHHHHHHHHHHHHCHHHCCCEEEE
Q ss_conf 999960288548852-----------00168732098148898999999999976487310212676
Q gi|254780403|r 11 LYLVFGGELENITQK-----------KMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNALMRYFV 66 (80)
Q Consensus 11 lhlV~GGel~d~~~~-----------~f~d~~~~eivG~f~~Y~~A~~AWka~Aq~TVDnA~mRYfI 66 (80)
..+||.|.+..+... -++|-..|..|||-.+...-...|...+.+.||++.=+|.+
T Consensus 31 ~~~v~~Gt~i~~~~~~~~evl~d~~v~V~d~GrI~~Vg~~~~~~~~~~~~~~~~~~vv~~~~Gk~vl 97 (476)
T 2uz9_A 31 LAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFM 97 (476)
T ss_dssp CSEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHHTCCGGGEEECCTTCEEE
T ss_pred CCEEEEEEEECCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCHHHHHCCCCCCEEEECCCCCEEE
T ss_conf 6199970398689988607996838998889789999670002112431369996399959998993
No 7
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, PSI, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=19.41 E-value=54 Score=14.69 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=30.0
Q ss_pred EEEEEEEEECCCCCEECCCCCCEEEECCCCHHHHHHHHHHHHHH----C-HHHCCCEEEEE
Q ss_conf 99960288548852001687320981488989999999999764----8-73102126766
Q gi|254780403|r 12 YLVFGGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQ----M-VDNALMRYFVV 67 (80)
Q Consensus 12 hlV~GGel~d~~~~~f~d~~~~eivG~f~~Y~~A~~AWka~Aq~----T-VDnA~mRYfIv 67 (80)
++|.|+.........+ . .-++=-|||.+.|.+.|.+-.=+ - .+++..++.|+
T Consensus 38 ~l~~g~~~~~~eg~~~---~-~~viieFps~e~a~~~~~SpeYq~~~~~R~~~~~~~~~iv 94 (99)
T 2fiu_A 38 FLARGGSVTELEGTAR---A-RNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIV 94 (99)
T ss_dssp EEEESCCEEEEESCCC---S-EEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEECCCEEEECCCCC---C-EEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf 9999995057528887---5-4899984999999988789989999999974756899999
No 8
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=16.29 E-value=23 Score=16.84 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=20.9
Q ss_pred ECCCCHHHH-HHHHHHHHHHCHHHCCCEEE
Q ss_conf 148898999-99999997648731021267
Q gi|254780403|r 37 GIFSSYSNA-YDVWKEKSQQMVDNALMRYF 65 (80)
Q Consensus 37 G~f~~Y~~A-~~AWka~Aq~TVDnA~mRYf 65 (80)
|.|.--..| .+||++....+.+.|+-+|.
T Consensus 48 ~~~~~~~~~Kw~AW~~~~g~s~~eA~~~YI 77 (89)
T 1hbk_A 48 SAHKYIDRKKYEAWKSVENLNREDAQKRYV 77 (89)
T ss_dssp CTTSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 856899999999999838999999999999
No 9
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON domain, cell membrane, membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=15.66 E-value=67 Score=14.16 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.2
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 168732098148898999999999
Q gi|254780403|r 28 RNPDDIDVVGIFSSYSNAYDVWKE 51 (80)
Q Consensus 28 ~d~~~~eivG~f~~Y~~A~~AWka 51 (80)
+.+..+..+|-||+ +.|+.|--.
T Consensus 14 rsgnt~tligdfpd-e~akaalmt 36 (132)
T 2kgs_A 14 RSGNTVTLIGDFPD-EAAKAALMT 36 (132)
T ss_dssp ECSSEEEEEEEESC-HHHHHHHHH
T ss_pred CCCCEEEEECCCCC-HHHHHHHHH
T ss_conf 16987898536886-578999999
No 10
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens}
Probab=15.37 E-value=20 Score=17.21 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCHHHCCCEE
Q ss_conf 9999999764873102126
Q gi|254780403|r 46 YDVWKEKSQQMVDNALMRY 64 (80)
Q Consensus 46 ~~AWka~Aq~TVDnA~mRY 64 (80)
.+||++....+.+.|+.+|
T Consensus 58 w~AW~~l~gms~~eA~~~Y 76 (89)
T 3epy_A 58 WEAWNLKKGLSTEDATSAY 76 (89)
T ss_dssp HHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
T ss_conf 9999984899999999999
Done!