Query gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 80
No_of_seqs 100 out of 110
Neff 3.5
Searched_HMMs 13730
Date Wed Jun 1 05:49:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780403.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1utaa_ d.58.52.1 (A:) Cell di 56.3 2.8 0.0002 20.7 2.0 31 34-64 44-74 (77)
2 d2od4a1 d.58.4.20 (A:1-100) Hy 38.8 11 0.00077 17.4 2.8 35 32-67 55-91 (100)
3 d2fiua1 d.58.4.16 (A:1-95) Hyp 33.7 16 0.0012 16.3 3.1 52 12-67 36-92 (95)
4 d2jfga2 c.59.1.1 (A:298-437) U 15.9 28 0.002 15.0 1.4 26 4-29 35-60 (140)
5 d1em9a_ a.73.1.1 (A:) RSV caps 14.1 43 0.0031 13.9 2.1 13 43-55 134-146 (147)
6 d1hbka_ a.11.1.1 (A:) Acyl-CoA 13.0 18 0.0013 16.0 -0.2 29 37-65 48-77 (89)
7 d1regx_ d.58.27.1 (X:) Transla 11.9 32 0.0024 14.6 0.8 12 62-73 43-54 (122)
8 d2qn6b1 d.58.51.1 (B:176-264) 11.8 50 0.0036 13.5 2.5 21 39-59 58-78 (89)
9 d1hb6a_ a.11.1.1 (A:) Acyl-CoA 11.4 22 0.0016 15.6 -0.2 30 36-65 44-74 (86)
10 d1vpsa_ b.121.6.1 (A:) Polyoma 10.2 1.8 0.00013 21.7 -6.1 11 32-42 140-150 (285)
No 1
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=56.33 E-value=2.8 Score=20.71 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=24.1
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCHHHCCCEE
Q ss_conf 0981488989999999999764873102126
Q gi|254780403|r 34 DVVGIFSSYSNAYDVWKEKSQQMVDNALMRY 64 (80)
Q Consensus 34 eivG~f~~Y~~A~~AWka~Aq~TVDnA~mRY 64 (80)
-++|||++.++|.++=......-++++-.|+
T Consensus 44 V~vGpf~~~~~A~~~~~~L~~~G~~~~i~~~ 74 (77)
T d1utaa_ 44 VVIGPVKGKENADSTLNRLKMAGHTNCIRLA 74 (77)
T ss_dssp EEESSCBTTTHHHHHHHHHHHHCCSCCBCCC
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9977849999999999999986998779981
No 2
>d2od4a1 d.58.4.20 (A:1-100) Hypothetical protein GOS_3280838 {environmental samples}
Probab=38.81 E-value=11 Score=17.36 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=24.4
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCHH--HCCCEEEEE
Q ss_conf 320981488989999999999764873--102126766
Q gi|254780403|r 32 DIDVVGIFSSYSNAYDVWKEKSQQMVD--NALMRYFVV 67 (80)
Q Consensus 32 ~~eivG~f~~Y~~A~~AWka~Aq~TVD--nA~mRYfIv 67 (80)
+.=++..|||.++|.++|...... ++ +...+.-|.
T Consensus 55 ~~~~I~~fpdK~tAdk~~~~~~~~-~~eik~~~Kiei~ 91 (100)
T d2od4a1 55 SGMYIIHYPDKQTAISVFDKIKPE-VDEVRTQNRIQIT 91 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHH-HHHHHHHSEEEEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHH-HHHHHCCCCEEEE
T ss_conf 599999939888999999998899-9997637837996
No 3
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=33.74 E-value=16 Score=16.29 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred EEEEEEEEECCCCCEECCCCCCEEEECCCCHHHHHHHHHHHHHH----CH-HHCCCEEEEE
Q ss_conf 99960288548852001687320981488989999999999764----87-3102126766
Q gi|254780403|r 12 YLVFGGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQ----MV-DNALMRYFVV 67 (80)
Q Consensus 12 hlV~GGel~d~~~~~f~d~~~~eivG~f~~Y~~A~~AWka~Aq~----TV-DnA~mRYfIv 67 (80)
+++.|+.-....+..+ . ..++==|||++.|.+.|.+..-+ -. +.+..+..|+
T Consensus 36 ~l~rg~~~~~~EG~~~---~-~~viieFps~e~A~~~~~SpeYq~~~~~R~~~~~~~~~iv 92 (95)
T d2fiua1 36 FLARGGSVTELEGTAR---A-RNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIV 92 (95)
T ss_dssp EEEESCCEEEEESCCC---S-EEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEECCCEEEECCCCC---C-EEEEEECCCHHHHHHHHCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf 9998792588648997---5-1899984999999989789989999999973767889999
No 4
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=15.86 E-value=28 Score=14.96 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCCCCEEEEEEEEEEEECCCCCEECC
Q ss_conf 77664259999602885488520016
Q gi|254780403|r 4 GIQEEQVLYLVFGGELENITQKKMRN 29 (80)
Q Consensus 4 ~~~~~Q~lhlV~GGel~d~~~~~f~d 29 (80)
++......+|..||..+..++..+.+
T Consensus 35 ~~~~~~~iiLI~GG~~K~~d~~~L~~ 60 (140)
T d2jfga2 35 GLHVDGTLHLLLGGDGKSADFSPLAR 60 (140)
T ss_dssp TCCCSSCEEEEEESBCTTCCCGGGGG
T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 55225733898604543332136665
No 5
>d1em9a_ a.73.1.1 (A:) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=14.11 E-value=43 Score=13.92 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999764
Q gi|254780403|r 43 SNAYDVWKEKSQQ 55 (80)
Q Consensus 43 ~~A~~AWka~Aq~ 55 (80)
+.|..|||+.+++
T Consensus 134 ~aAl~AWr~l~~~ 146 (147)
T d1em9a_ 134 ASALQAFREVARL 146 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999987531
No 6
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}
Probab=12.98 E-value=18 Score=16.02 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred ECCCCHHH-HHHHHHHHHHHCHHHCCCEEE
Q ss_conf 14889899-999999997648731021267
Q gi|254780403|r 37 GIFSSYSN-AYDVWKEKSQQMVDNALMRYF 65 (80)
Q Consensus 37 G~f~~Y~~-A~~AWka~Aq~TVDnA~mRYf 65 (80)
|.|.--+. -.+||++....+.+.|+-+|.
T Consensus 48 ~~~~~~~~~Kw~AW~~l~gms~~eA~~~Yi 77 (89)
T d1hbka_ 48 SAHKYIDRKKYEAWKSVENLNREDAQKRYV 77 (89)
T ss_dssp CTTSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 735799999999999848989999999999
No 7
>d1regx_ d.58.27.1 (X:) Translational regulator protein regA {Bacteriophage T4 [TaxId: 10665]}
Probab=11.88 E-value=32 Score=14.59 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=8.4
Q ss_pred CEEEEEEHHHCC
Q ss_conf 126766723218
Q gi|254780403|r 62 MRYFVVDISRFP 73 (80)
Q Consensus 62 mRYfIvhlhrl~ 73 (80)
-||||||--.|+
T Consensus 43 G~YyIvHFKELF 54 (122)
T d1regx_ 43 GLYYIVHFKEML 54 (122)
T ss_dssp TEEEEEEHHHHH
T ss_pred CEEEEEEHHHHH
T ss_conf 659999989987
No 8
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.85 E-value=50 Score=13.52 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHCHHH
Q ss_conf 889899999999997648731
Q gi|254780403|r 39 FSSYSNAYDVWKEKSQQMVDN 59 (80)
Q Consensus 39 f~~Y~~A~~AWka~Aq~TVDn 59 (80)
=|||.+|.++|+...+.-...
T Consensus 58 a~D~k~ae~~l~~a~~~i~~~ 78 (89)
T d2qn6b1 58 GTNPKEASEALNQIISNLIKI 78 (89)
T ss_dssp ESCHHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHHH
T ss_conf 078999999999999999999
No 9
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.39 E-value=22 Score=15.57 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=22.1
Q ss_pred EECCCCHHHH-HHHHHHHHHHCHHHCCCEEE
Q ss_conf 8148898999-99999997648731021267
Q gi|254780403|r 36 VGIFSSYSNA-YDVWKEKSQQMVDNALMRYF 65 (80)
Q Consensus 36 vG~f~~Y~~A-~~AWka~Aq~TVDnA~mRYf 65 (80)
-|.|.--.-| .+||++....+.+.|+.+|.
T Consensus 44 P~~~~~~~~aKw~AW~~~~gms~~eA~~~YI 74 (86)
T d1hb6a_ 44 PGMLDFKGKAKWDAWNELKGTSKEDAMKAYI 74 (86)
T ss_dssp CCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9842099999999999848989999999999
No 10
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=10.17 E-value=1.8 Score=21.71 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.9
Q ss_pred CCEEEECCCCH
Q ss_conf 32098148898
Q gi|254780403|r 32 DIDVVGIFSSY 42 (80)
Q Consensus 32 ~~eivG~f~~Y 42 (80)
.+|++|+-++|
T Consensus 140 PLdlqg~~~n~ 150 (285)
T d1vpsa_ 140 PLDLQGLVTDA 150 (285)
T ss_dssp CEEEEECCSCT
T ss_pred CEEEEEEECCC
T ss_conf 33666663155
Done!