RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)



>gnl|CDD|36342 KOG1127, KOG1127, KOG1127, TPR repeat-containing protein [RNA
           processing and modification].
          Length = 1238

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 39  FSSYSNAYDVWKEKSQQMVDNALMRYFVVDISRFPHY 75
             +     D+W +K +   +  L +   + ++   HY
Sbjct: 181 LYNQPTNSDLW-DKIRSEAEGLLYQRLGMFLAAKKHY 216


>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
           5/6-kinase.  This family consists of several inositol 1,
           3, 4-trisphosphate 5/6-kinase proteins. Inositol
           1,3,4-trisphosphate is at a branch point in inositol
           phosphate metabolism. It is dephosphorylated by specific
           phosphatases to either inositol 3,4-bisphosphate or
           inositol 1,3-bisphosphate. Alternatively, it is
           phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
           inositol 1,3,4,5-tetrakisphosphate by inositol
           trisphosphate 5/6-kinase.
          Length = 307

 Score = 25.1 bits (55), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 63  RYFVVDISRFPHYE 76
           RY V+DI+ FP Y 
Sbjct: 279 RYLVIDINYFPGYA 292


>gnl|CDD|32849 COG3034, COG3034, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 298

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 24  QKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMV 57
            +K  NPD    + I   Y NAYD    ++   +
Sbjct: 108 TRKQLNPDSYYYLSINIGYPNAYDKALGRTGGGI 141


>gnl|CDD|107262 cd06267, PBP1_LacI_sugar_binding_like, Ligand binding domain of the
           LacI tanscriptional regulator family belonging to the
           type I periplasmic-binding fold protein superfamily.
           Ligand binding domain of the LacI tanscriptional
           regulator family belonging to the type I
           periplasmic-binding fold protein superfamily.  In most
           cases, ligands are monosaccharide including lactose,
           ribose, fructose, xylose, arabinose, galactose/glucose,
           and other sugars. The LacI family of proteins consists
           of transcriptional regulators related to the lac
           repressor. In this case, the domain sugar binding
           changes the DNA binding activity of the repressor
           domain.
          Length = 264

 Score = 24.5 bits (54), Expect = 6.9
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 20/61 (32%)

Query: 22  ITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNALMRYFVVDIS--RFPHYELGK 79
           + +  +R P+D+ VVG        +D          D  L       ++  R P  E+G+
Sbjct: 196 LRELGLRVPEDVSVVG--------FD----------DIPLAELLTPPLTTVRQPIEEMGR 237

Query: 80  E 80
            
Sbjct: 238 A 238


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,020,318
Number of extensions: 43813
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 6
Length of query: 80
Length of database: 6,263,737
Length adjustment: 50
Effective length of query: 30
Effective length of database: 5,183,287
Effective search space: 155498610
Effective search space used: 155498610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)