RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)



>gnl|CDD|179244 PRK01198, PRK01198, V-type ATP synthase subunit C; Provisional.
          Length = 352

 Score = 27.5 bits (62), Expect = 0.85
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 7   EEQVLYLVFGGELENITQKKMRNPDDI-DVVGIFSSY------SNAYDVW-KEKSQQMVD 58
           EE    L+  GEL+    K++     + ++V I            A + + +    Q ++
Sbjct: 122 EEIEELLIPAGELDLEKLKELLEAKSVEEIVKILEGTEYYEVLEEALEDYEETGDLQPIE 181

Query: 59  NALMRYF 65
           NAL +Y+
Sbjct: 182 NALDKYY 188


>gnl|CDD|128434 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
          Microtubule-dependent molecular motors that play
          important roles in intracellular transport of
          organelles and in cell division.
          Length = 335

 Score = 25.6 bits (57), Expect = 2.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 37 GIFSSYSNAYDVWKEKSQQMVDNALMRY 64
           +F + ++  DV++E +  +VD+ L  Y
Sbjct: 52 KVFGATASQEDVFEETAAPLVDSVLEGY 79


>gnl|CDD|178529 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
          Length = 328

 Score = 25.3 bits (56), Expect = 3.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 63  RYFVVDISRFPHY 75
           RY+V+DI+ FP Y
Sbjct: 294 RYYVIDINYFPGY 306


>gnl|CDD|181438 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.
          Length = 613

 Score = 25.0 bits (55), Expect = 4.2
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 32  DIDVVGIFSSYSNAYDVWKEKSQQMVDNA 60
           D+D  GI     + ++ W + +    D+A
Sbjct: 104 DLDDTGILKDLQDYFNAWNDFASNPKDSA 132


>gnl|CDD|182761 PRK10828, PRK10828, putative oxidoreductase; Provisional.
          Length = 183

 Score = 24.6 bits (54), Expect = 6.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 16 GGELENITQKKMRNPD 31
          G +L+NI +  MR PD
Sbjct: 23 GEQLQNILRAGMRAPD 38


>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
          Length = 720

 Score = 24.5 bits (54), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 11  LYLVFGGEL----ENITQKKMRNPDDIDVV 36
           LY  FG +L    E I QK  R  D  D+V
Sbjct: 157 LYGAFGYDLAFQFEPIEQKLPRPDDQRDLV 186


>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
          Provisional.
          Length = 342

 Score = 23.7 bits (52), Expect = 9.6
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 30 PDDIDVVGIFSSYSNAYDVWKEKSQQMVDNA 60
          P  +D   +   ++  +  W+  S+QM DNA
Sbjct: 34 PAQLDAASV-RVHTQQFHHWQVLSRQMGDNA 63


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,359,321
Number of extensions: 69550
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 17
Length of query: 80
Length of database: 5,994,473
Length adjustment: 50
Effective length of query: 30
Effective length of database: 4,914,073
Effective search space: 147422190
Effective search space used: 147422190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)