RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
         (80 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 27.1 bits (59), Expect = 0.87
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 9   QVLYL--VFGGELENITQKKMRNPDDIDV 35
           Q++     F   +E   ++   N ++I +
Sbjct: 293 QIVLFSATFSERVEKYAERFAPNANEIRL 321


>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
          oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
          (A:50-117,A:240-340)
          Length = 169

 Score = 24.7 bits (54), Expect = 4.9
 Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 15/57 (26%)

Query: 38 IFSSYSNAYDVWKEKSQQMVDNAL------------MRY--FVVDISRFPHYELGKE 80
             +   A  +  E +  M   AL             R    +  ISR+    L   
Sbjct: 15 SLKNLGLADKILSE-ANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHMI 70


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 647,461
Number of extensions: 23672
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 5
Length of query: 80
Length of database: 4,956,049
Length adjustment: 44
Effective length of query: 36
Effective length of database: 3,468,629
Effective search space: 124870644
Effective search space used: 124870644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)