BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780403|ref|YP_003064816.1| hypothetical protein
CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62]
(80 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 80
Score = 166 bits (420), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MINGIQEEQVLYLVFGGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNA 60
MINGIQEEQVLYLVFGGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNA
Sbjct: 1 MINGIQEEQVLYLVFGGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNA 60
Query: 61 LMRYFVVDISRFPHYELGKE 80
LMRYFVVDISRFPHYELGKE
Sbjct: 61 LMRYFVVDISRFPHYELGKE 80
>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 205
Score = 25.0 bits (53), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 16 GGELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQM 56
G + ++ Q +N ++VG+FS SNA + K + +++
Sbjct: 14 GTNMLSLIQATKKNDYPAEIVGVFSDNSNAQGLVKARKEKV 54
>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 24.6 bits (52), Expect = 0.32, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 9 QVLYLVFGGELENITQKK 26
+V YL+ GEL N++Q+K
Sbjct: 84 EVCYLLLHGELANVSQQK 101
>gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 157
Score = 22.7 bits (47), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 44 NAYDVWKEKS 53
+YDVWKEKS
Sbjct: 101 KSYDVWKEKS 110
>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 412
Score = 21.9 bits (45), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 34 DVVGIFSSYSNAY 46
DV+GI SSY+ Y
Sbjct: 299 DVIGIISSYTGEY 311
>gi|254780894|ref|YP_003065307.1| hypothetical protein CLIBASIA_03955 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 103
Score = 20.4 bits (41), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 36 VGIFSSYSNAYDVWKEKSQQMVDN 59
VGI+ AY + + ++Q +DN
Sbjct: 50 VGIYDKDHFAYPILAKSARQRIDN 73
>537021.9.peg.472_1
Length = 369
Score = 20.4 bits (41), Expect = 6.8, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 34 DVVGIFSSYSNAYDVWKEKSQQMVDNALMRYFVVDISRFP 73
D++ + +S+ YD S + D A + V I P
Sbjct: 247 DIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIP 286
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 20.0 bits (40), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 18 ELENITQKKMRNPDDIDVVGIFSSYSNAYDVWKEKSQQMVDNALMRY 64
E+ + Q + N + + G+F +SN V + D+A+ RY
Sbjct: 240 EMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRY 286
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,185
Number of Sequences: 1233
Number of extensions: 1932
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 80
length of database: 328,796
effective HSP length: 49
effective length of query: 31
effective length of database: 268,379
effective search space: 8319749
effective search space used: 8319749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)