HHsearch results for GI: 254780404 and protein with PDBid: 1vdw_A
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1
Probab=100.00 E-value=0 Score=369.07 Aligned_cols=249 Identities=18% Similarity=0.227 Sum_probs=206.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
Q ss_conf 110088999999999999999997188420--477258888204899999999999998415631454224556332466
Q gi|254780404|r 29 YEWKQDLDIVRSAVQGASTVAMQYFLRSPN--VWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLN 106 (286)
Q Consensus 29 ~~~~~~l~~a~~aa~~Ag~~~~~~f~~~~~--~~~k~~~~~~VT~aD~~~e~~i~~~L~~~~P~~~iigEE~~~~~~~~~ 106 (286)
+++++..++|.+++++|++.++++|+.... ...++.++|+||++|+++|++|++.|++.+| +|+|||++.. ..+
T Consensus 1 m~~~~~~~ia~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~d~vt~~D~~~e~~i~~~L~~~~~--~ii~EE~~~~--~~~ 76 (254)
T 1vdw_A 1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV--NVVSEEIGRI--DQG 76 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTGGGTTCGGGGCEEEC-----CEEHHHHHHHHHHHHHHHHTTC--EEEETTTEEE--CCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCC--CCC
T ss_conf 987999999999999999999998567333735755599594439999999999999866799--9898166778--899
Q ss_pred CEEEEEEEECCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 30356763213402221002210235554301221021100022333221222331001788633345787650799984
Q gi|254780404|r 107 YETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMAS 186 (286)
Q Consensus 107 ~~~~WiIDPIDGT~nF~~g~p~f~vsIal~~~g~pv~gvi~~P~~~~~~~a~~g~ga~~n~~~i~~~~~~~~~~~~~~~~ 186 (286)
++++|+|||||||+||++|.|.|||+|||+++|+|++|+||+|.++++|+|.+|.|+++|+++++++.........+...
T Consensus 77 ~~~~WvIDPIDGT~nf~~G~~~~~v~ial~~~g~p~~gvi~~P~~~~~~~a~~~~g~~~n~~~i~~~~~~~~~~~~~~~~ 156 (254)
T 1vdw_A 77 SDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTK 156 (254)
T ss_dssp CSEEEEEEEEECHHHHHTTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEEETTTEEEETTEEECCCCCCSSCEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHCCCHHCCEEEEEECCCEEECCCCCCCCCCEEEECCCCEEEECCCEEECCCCCCCCCEEEECC
T ss_conf 88589996251879997128202508789958945676324765331024315825357895611033666764144315
Q ss_pred CCCCCCHHHHHHHCCEEEECHHHHHHHHHHCCCCCEEEECC-CCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 46643101236543701305255788986212236998527-99987821679999868909995899841167755558
Q gi|254780404|r 187 DVSLKGLDSYVRFRRQSSISSLCLRILMIASGEVDVLIVDR-NANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNH 265 (286)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~gs~~~~~~~vA~G~~d~~~~~~-~~~~WD~aAg~~i~~eAGG~vtdl~G~~~~~~~~~~~~ 265 (286)
... ........++|.+||+++++|+||+|++|+|+... ..++||+|||.+|++||||.++|++|+|+.|+....+.
T Consensus 157 ~~~---~~~~~~~~~~r~~gs~~~~~~~va~G~~d~~v~~~~~~~~wD~aAg~~I~~eaGg~vtd~~G~~l~~~~~~~~~ 233 (254)
T 1vdw_A 157 GKG---TKIIDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEK 233 (254)
T ss_dssp SCC---HHHHHTCSEEEBCSCHHHHHHHHHHTSCSEEEEEEEEECHHHHHHHHHHHHHTTCEEECTTSSBCCCCSCSSCC
T ss_pred CCC---CHHHHHHHHEEECCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
T ss_conf 653---02344564164328289987564157635897256899778998999999978997968999864268886667
Q ss_pred -CEEEECCHHHHHHHHHHHH
Q ss_conf -8899874897999999751
Q gi|254780404|r 266 -EVLFASAKWHFPSFKQHLS 284 (286)
Q Consensus 266 -~~l~a~~~~~~~~l~~~~~ 284 (286)
++++|+++..+..|.+.|.
T Consensus 234 ~~~iaa~n~~l~~~iL~~i~ 253 (254)
T 1vdw_A 234 VNIIAANNEELLETILRSIE 253 (254)
T ss_dssp EEEEEESCHHHHHHHHHTCC
T ss_pred CCEEEECCHHHHHHHHHHHC
T ss_conf 88899999999999999856