RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780404|ref|YP_003064817.1| inositol monophosphatase
family protein [Candidatus Liberibacter asiaticus str. psy62]
         (286 letters)



>gnl|CDD|130398 TIGR01331, bisphos_cysQ, 3'(2'),5'-bisphosphate nucleotidase,
           bacterial.  Sulfate is incorporated into
           3-phosphoadenylylsulfate, PAPS, for utilization in
           pathways such as methionine biosynthesis. Transfer of
           sulfate from PAPS to an acceptor leaves adenosine
           3'-5'-bisphosphate, APS. This model describes a form
           found in bacteria of the enzyme 3'(2'),5'-bisphosphate
           nucleotidase, which removes the 3'-phosphate from APS to
           regenerate AMP and help drive the cycle.
          Length = 249

 Score =  116 bits (292), Expect = 7e-27
 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 35  LDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWL 94
           LD V    + A    +  + +   V  K   +SPV +AD A + ++   LR L P    L
Sbjct: 2   LDDVIKIARAAGEEILPVYQKELAVAQK-ADNSPVTEADRAAHRFILEGLRALTPDIPVL 60

Query: 95  SEE--TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALG 152
           SEE  +     R  ++  ++VDP+DGT+ FI    ++ +++A+V HG PV+GVV+A A G
Sbjct: 61  SEEDASIPLTPRQTWQRFWLVDPLDGTKEFINRNGDFTVNIALVEHGVPVLGVVYAPATG 120

Query: 153 KEFFVSVGMKSTCNGKNISVSS-----NQMSDSLAIMAS----DVSLKGLDSYVRFRRQS 203
             +F + G  +   G   ++ +        S  L ++ S    +       + + +  ++
Sbjct: 121 VTYFATAGKAAKREGDGQALKAPIHVRPWPSGPLLVVISRSHAEEKTTEYLANLGYDLRT 180

Query: 204 SISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYN 259
           S  S  L+  ++A G  D+        +WD AA   +L  +GGA+ D+D   L Y 
Sbjct: 181 SGGS-SLKFCLVAEGSADIYPRLGPTGEWDTAAGHAVLAAAGGAIFDLDGSPLLYG 235


>gnl|CDD|162680 TIGR02067, his_9_proposed, histidinol-phosphate phosphatase HisN,
           inositol monophosphatase family.  This subfamily belongs
           to the inositol monophosphatase family (pfam00459). The
           members of this family consist of no more than one per
           species and are found only in species in which histidine
           is synthesized de novo but no histidinol phosphatase can
           be found in either of the two described families
           (TIGR01261, TIGR01856). In at least one species, the
           member of this family is found near known histidine
           biosynthesis genes.
          Length = 251

 Score = 90.1 bits (224), Expect = 7e-19
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 13/219 (5%)

Query: 45  ASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQR 104
           A    + +F  S  V  K    +PV +AD A  + +   +    P +G L EE   + + 
Sbjct: 12  AGETILPFFRASLLVVDKKSDKTPVTEADRAAEEAMRELIAAFFPDHGILGEEFGHN-EE 70

Query: 105 LNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKST 164
            + E ++V+DPIDGT++FI G   W   +A+V  G PV+GV+   A G+ ++ + G  + 
Sbjct: 71  GDAERVWVLDPIDGTKSFIRGVPVWGTLIALVEGGMPVLGVIFQPATGERWWAAGGGAAF 130

Query: 165 CNGKNISVSSNQMSDSLAIMASDVSLKGLDS------YVRFRRQSSISSL---CLRILMI 215
             G+ + VSS        +  +   L  LD       + R R  + ++     C   LM+
Sbjct: 131 LGGRRLRVSSCANLSDAVLFTTSPYL--LDDPENRPAFQRLRDAARLTRYGGDCYAYLMV 188

Query: 216 ASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRK 254
           A G VD ++V+   + WD+AA   ++E +GG   D D K
Sbjct: 189 AGGAVD-IVVEPGLSPWDIAALIPVIEEAGGCFTDWDGK 226


>gnl|CDD|178499 PLN02911, PLN02911, inositol-phosphate phosphatase.
          Length = 296

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 36  DIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLS 95
           D+       A  V  +YF     +  K E  SPV  AD A  + + S +    P++    
Sbjct: 38  DVAHKLADAAGEVTRKYFRTKFEIIDK-EDLSPVTIADRAAEEAMRSIILENFPSHAIFG 96

Query: 96  EETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEF 155
           EE        + + ++V+DPIDGT++FI G+  +   +A+++ G+PV+G++    L KE 
Sbjct: 97  EEHGLRCGEGSSDYVWVLDPIDGTKSFITGKPLFGTLIALLYKGKPVLGIIDQPVL-KER 155

Query: 156 FVSV-GMKSTCNGKNISV-SSNQMSDSLAIMASDVSLKG--LDSYVRFRRQSSISSL--- 208
           +V V G  +T NG+ IS  S   + D+     S     G   D++ R R +  +      
Sbjct: 156 WVGVAGRATTLNGEEISTRSCASLKDAYLYTTSPHMFSGDAEDAFARVRDKVKVPLYGCD 215

Query: 209 CLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVD 250
           C    ++ASG VD L+V+     +D  A   ++E +GG + D
Sbjct: 216 CYAYGLLASGHVD-LVVESGLKPYDYLALVPVVEGAGGVITD 256


>gnl|CDD|182848 PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase;
           Provisional.
          Length = 246

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%)

Query: 66  SSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDL-QRLNYETLFVVDPIDGTRAFIE 124
            SPV  ADIA +  ++  LR L P    LSEE       R +++  ++VDP+DGT+ FI+
Sbjct: 34  DSPVTAADIAAHTVIKDGLRTLTPDIPVLSEEDPPAWEVRQHWQRYWLVDPLDGTKEFIK 93

Query: 125 GRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGK 168
              E+ +++A++  G+PV+GVV+A  +         M S   GK
Sbjct: 94  RNGEFTVNIALIEQGKPVLGVVYAPVMNV-------MYSAAEGK 130


>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
           monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
          Length = 263

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 36/217 (16%)

Query: 73  DIAVNDYLESFLRPLRPAYGWLSEE---TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEW 129
           DI +       L+PL      +SEE      +      E   V+DP+DGT   I G   +
Sbjct: 52  DIIL-----EVLKPLGRCVNIISEELGEIVGN----GPEYTVVLDPLDGTYNAINGIPFY 102

Query: 130 CISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVS 189
            IS+AV   G+PV G V+  A G  +    G  +  NGK I VS         +  S VS
Sbjct: 103 AISIAVFKGGKPVYGYVYNLATGDFYEAIPGKGAYLNGKPIKVSKTS-----ELNESAVS 157

Query: 190 LKGLDSYVRFRRQSSISSLC-----LRIL--------MIASGEVDVLIVDRNA-NDWDLA 235
           +     Y   R +     L      +RIL         +ASG +D  +  RN     D+A
Sbjct: 158 I-----YGYRRGKERTVKLGRKVRRVRILGAIALELCYVASGRLDAFVDVRNYLRVTDIA 212

Query: 236 AADLLLECSGGALVDIDRKLLTYNRSQVNHEVLFASA 272
           A  L+ E +GG + D D   L    +      L A+ 
Sbjct: 213 AGKLICEEAGGIVTDEDGNELKLPLNVTERTNLIAAN 249


>gnl|CDD|178338 PLN02737, PLN02737, inositol monophosphatase family protein.
          Length = 363

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%)

Query: 35  LDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWL 94
           L +   A +  + V M+   +  N+ +K   +  V D D A    +   +R   P +  L
Sbjct: 80  LAVAELAAKTGAEVVMEAVNKPRNISYK-GLTDLVTDTDKASEAAILEVVRKNFPDHLIL 138

Query: 95  SEE------TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHA 148
            EE      +  D        L+ +DP+DGT  F  G   + +SV V+  G P    V  
Sbjct: 139 GEEGGVIGDSSSDY-------LWCIDPLDGTTNFAHGYPSFAVSVGVLFRGTPAAATVVE 191

Query: 149 SALG------KEFFVSVGMKSTCNGKNISVS-SNQMSDSLAIM----------ASDVSLK 191
              G      + F  S G  + CNG+ I VS ++++  SL +           A+++ L 
Sbjct: 192 FVGGPMCWNTRTFSASAGGGAFCNGQKIHVSQTDKVERSLLVTGFGYEHDDAWATNIEL- 250

Query: 192 GLDSYVRFRRQSSISSLCLRILMIASGEVDVL-----IVDR----NANDWDLAAADLLLE 242
                         + +   +  + +  VD+      IV+         WD+AA  L++E
Sbjct: 251 ----------FKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLIVE 300

Query: 243 CSGGALVDID-RKLLTYNRS 261
            +GG +  +D  K   ++RS
Sbjct: 301 EAGGTVTRMDGGKFSVFDRS 320


>gnl|CDD|178168 PLN02553, PLN02553, inositol-phosphate phosphatase.
          Length = 270

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 21/199 (10%)

Query: 69  VCDADIAVNDYLESFLRPLRPAYGWLSEETD--DDLQRLNYETLFVVDPIDGTRAFIEGR 126
           V + D A  D + + L+   P++ ++ EET        L  E  ++VDP+DGT  F+ G 
Sbjct: 44  VTETDKACEDLIFNHLKQAFPSHKFIGEETTAASGGTELTDEPTWIVDPLDGTTNFVHGF 103

Query: 127 NEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTC-NGKNISVSSNQMSDSLAIMA 185
              C+S+ +     PV+GVV+   L  E F +V  K    NGK I  SS Q     A++A
Sbjct: 104 PFVCVSIGLTIGKVPVVGVVYNPIL-DELFTAVKGKGAFLNGKPIKASS-QSELGKALLA 161

Query: 186 SDVSLK--------------GLDSYVRFRRQSSISSLCLRILMIASGEVDVLIVDRNAND 231
           ++V  K               L   VR  R S   S  L +  +A G +D+         
Sbjct: 162 TEVGTKRDKATVDATTNRINALLYKVRSLRMS--GSCALNLCGVACGRLDIFYEIGFGGP 219

Query: 232 WDLAAADLLLECSGGALVD 250
           WD+AA  ++++ +GG + D
Sbjct: 220 WDVAAGAVIVKEAGGLVFD 238


>gnl|CDD|182704 PRK10757, PRK10757, inositol monophosphatase; Provisional.
          Length = 267

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 36/235 (15%)

Query: 38  VRSAVQGASTVAMQYFLRSPN-VWWKHEGSSP-VCDADIAVNDYLESFLRPLRPAYGWLS 95
           VR+A +  + +A  Y   +P+ V    +GS+  V + D A    +   +R   P +  ++
Sbjct: 9   VRAARKAGNLIAKNY--ETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIIT 66

Query: 96  EE------TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHAS 149
           EE       D D+Q       +V+DP+DGT  FI+    + +S+AV   GR  + VV+  
Sbjct: 67  EESGELEGEDQDVQ-------WVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDP 119

Query: 150 ALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKG---LDSYVR-------- 198
              + F  + G  +  NG  +  S+ +  D   I+A+    K      +Y+         
Sbjct: 120 MRNELFTATRGQGAQLNGYRLRGSTARDLDG-TILATGFPFKAKQHATTYINIVGKLFTE 178

Query: 199 ---FRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVD 250
              FRR  S +   L +  +A+G VD    +     WD AA +LL+  +GG + D
Sbjct: 179 CADFRRTGSAA---LDLAYVAAGRVDGFF-EIGLKPWDFAAGELLVREAGGIVSD 229


>gnl|CDD|184490 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
          Length = 569

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 31/187 (16%)

Query: 108 ETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPV-----------------IGVVHASA 150
           E +FV+DPIDGT   ++    +  S+A+                        +GVV   A
Sbjct: 81  EYIFVLDPIDGTYNALKDIPIYSASIAIAKIDGFDKKIKEFIGKNLTINDLEVGVVKNIA 140

Query: 151 LGKEFFVSVG----MKSTCNGKNISVS--SNQMSDSLAIMASDVSLKGLD--SYVRFRRQ 202
            G  ++   G    +      K I +S  SN    S+ + A  +SL  L      + RR 
Sbjct: 141 TGDTYYAEKGEGAYLLKKGEKKKIEISNISNLKDASIGLFAYGLSLDTLKFIKDRKVRRI 200

Query: 203 SSISSLCLRILMIASGEVDVLI-VDRNANDWDLAAADLLLECSGGALVD-----IDRKLL 256
               S+ L +  +ASG +D  I V+      D+AA  ++ + +GG + +     ++ KL 
Sbjct: 201 RLFGSIALEMCYVASGALDAFINVNETTRLCDIAAGYVICKEAGGIITNKNGKPLNMKLD 260

Query: 257 TYNRSQV 263
              ++ V
Sbjct: 261 INEKTSV 267


>gnl|CDD|162304 TIGR01330, bisphos_HAL2, 3'(2'),5'-bisphosphate nucleotidase, HAL2
           family.  Some members of this family are active also as
           inositol 1-monophosphatase.
          Length = 353

 Score = 36.8 bits (85), Expect = 0.007
 Identities = 14/36 (38%), Positives = 29/36 (80%), Gaps = 1/36 (2%)

Query: 111 FVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVV 146
           +V+DPIDGT+ F+ G +++ + +A++ +G+ V+GV+
Sbjct: 133 WVLDPIDGTKGFLRG-DQYAVCLALIENGKVVLGVI 167


>gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
          Length = 974

 Score = 29.0 bits (65), Expect = 1.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 120 RAFIEGRNEWCIS 132
           RA + GR++WCIS
Sbjct: 460 RAMVSGRSDWCIS 472


>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
          Length = 335

 Score = 27.4 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 119 TRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFF 156
           TR   E   EW +   +V+HG P   +     +GKEFF
Sbjct: 57  TRLIAEASKEWGM-FQIVNHGIPSEVISKLQKVGKEFF 93


>gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit.
           Members of this family represent the B subunit of
           dipicolinic acid synthetase, an enzyme that synthesizes
           a small molecule that appears to confer heat stability
           to bacterial endospores such as those of Bacillus
           subtilis. The A and B subunits are together in what was
           originally designated the spoVF locus for stage V of
           endospore formation.
          Length = 187

 Score = 27.4 bits (61), Expect = 4.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 139 GRPVI-GVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLK 191
           GRP I  +V A   G +  +   + +   G ++S  +N M+DS  +MA+  +L+
Sbjct: 61  GRPAINTIVEAEPFGPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLR 114


>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA.  This model
           describes flagellar biosynthesis protein FlhA, one of a
           large number of genes associated with the biosynthesis
           of functional bacterial flagella. Homologs of many such
           proteins, including FlhA, function in type III protein
           secretion systems. A separate model describes InvA
           (Salmonella enterica), LcrD (Yersinia enterocolitica),
           HrcV (Xanthomonas), etc., all of which score below the
           noise cutoff for this model.
          Length = 678

 Score = 26.8 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 7/31 (22%)

Query: 89  PAYG----WLSEETDDDLQRLNYETLFVVDP 115
           PA+G    W+SE+  ++ +RL Y    VVDP
Sbjct: 441 PAFGLPAYWISEKNKEEAERLGYT---VVDP 468


>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain. 
          Length = 206

 Score = 27.1 bits (60), Expect = 6.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 76  VNDYLESFLRPLRPAYGWLSEETDDDL 102
           V   LE FL    P Y W++ +  D L
Sbjct: 114 VGRQLEEFLNQSSPFYFWMNGDRIDSL 140


>gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
          Length = 442

 Score = 26.9 bits (60), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 65  GSSPVCDADIAVNDYLESFLR 85
           GS P  D  I +N  LE+FLR
Sbjct: 396 GSDPEVDEAIRLNPALEAFLR 416


>gnl|CDD|178235 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein.
          Length = 351

 Score = 26.3 bits (58), Expect = 8.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 73  DIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLNYETLFVV--DPIDGTRAF 122
           DI  N+ + S LR         SEE DD    +  +  +VV  DP+DG+R  
Sbjct: 83  DIVSNEIILSSLRNSGKVAVMASEE-DDAPIWIGDDGPYVVVFDPLDGSRNI 133


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,607,251
Number of extensions: 286015
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 21
Length of query: 286
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 194
Effective length of database: 4,006,537
Effective search space: 777268178
Effective search space used: 777268178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.9 bits)