RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter asiaticus str. psy62] (286 letters) >gnl|CDD|130398 TIGR01331, bisphos_cysQ, 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle. Length = 249 Score = 116 bits (292), Expect = 7e-27 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 13/236 (5%) Query: 35 LDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWL 94 LD V + A + + + V K +SPV +AD A + ++ LR L P L Sbjct: 2 LDDVIKIARAAGEEILPVYQKELAVAQK-ADNSPVTEADRAAHRFILEGLRALTPDIPVL 60 Query: 95 SEE--TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALG 152 SEE + R ++ ++VDP+DGT+ FI ++ +++A+V HG PV+GVV+A A G Sbjct: 61 SEEDASIPLTPRQTWQRFWLVDPLDGTKEFINRNGDFTVNIALVEHGVPVLGVVYAPATG 120 Query: 153 KEFFVSVGMKSTCNGKNISVSS-----NQMSDSLAIMAS----DVSLKGLDSYVRFRRQS 203 +F + G + G ++ + S L ++ S + + + + ++ Sbjct: 121 VTYFATAGKAAKREGDGQALKAPIHVRPWPSGPLLVVISRSHAEEKTTEYLANLGYDLRT 180 Query: 204 SISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYN 259 S S L+ ++A G D+ +WD AA +L +GGA+ D+D L Y Sbjct: 181 SGGS-SLKFCLVAEGSADIYPRLGPTGEWDTAAGHAVLAAAGGAIFDLDGSPLLYG 235 >gnl|CDD|162680 TIGR02067, his_9_proposed, histidinol-phosphate phosphatase HisN, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes. Length = 251 Score = 90.1 bits (224), Expect = 7e-19 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 13/219 (5%) Query: 45 ASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDLQR 104 A + +F S V K +PV +AD A + + + P +G L EE + + Sbjct: 12 AGETILPFFRASLLVVDKKSDKTPVTEADRAAEEAMRELIAAFFPDHGILGEEFGHN-EE 70 Query: 105 LNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKST 164 + E ++V+DPIDGT++FI G W +A+V G PV+GV+ A G+ ++ + G + Sbjct: 71 GDAERVWVLDPIDGTKSFIRGVPVWGTLIALVEGGMPVLGVIFQPATGERWWAAGGGAAF 130 Query: 165 CNGKNISVSSNQMSDSLAIMASDVSLKGLDS------YVRFRRQSSISSL---CLRILMI 215 G+ + VSS + + L LD + R R + ++ C LM+ Sbjct: 131 LGGRRLRVSSCANLSDAVLFTTSPYL--LDDPENRPAFQRLRDAARLTRYGGDCYAYLMV 188 Query: 216 ASGEVDVLIVDRNANDWDLAAADLLLECSGGALVDIDRK 254 A G VD ++V+ + WD+AA ++E +GG D D K Sbjct: 189 AGGAVD-IVVEPGLSPWDIAALIPVIEEAGGCFTDWDGK 226 >gnl|CDD|178499 PLN02911, PLN02911, inositol-phosphate phosphatase. Length = 296 Score = 77.1 bits (190), Expect = 5e-15 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 10/222 (4%) Query: 36 DIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWLS 95 D+ A V +YF + K E SPV AD A + + S + P++ Sbjct: 38 DVAHKLADAAGEVTRKYFRTKFEIIDK-EDLSPVTIADRAAEEAMRSIILENFPSHAIFG 96 Query: 96 EETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEF 155 EE + + ++V+DPIDGT++FI G+ + +A+++ G+PV+G++ L KE Sbjct: 97 EEHGLRCGEGSSDYVWVLDPIDGTKSFITGKPLFGTLIALLYKGKPVLGIIDQPVL-KER 155 Query: 156 FVSV-GMKSTCNGKNISV-SSNQMSDSLAIMASDVSLKG--LDSYVRFRRQSSISSL--- 208 +V V G +T NG+ IS S + D+ S G D++ R R + + Sbjct: 156 WVGVAGRATTLNGEEISTRSCASLKDAYLYTTSPHMFSGDAEDAFARVRDKVKVPLYGCD 215 Query: 209 CLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVD 250 C ++ASG VD L+V+ +D A ++E +GG + D Sbjct: 216 CYAYGLLASGHVD-LVVESGLKPYDYLALVPVVEGAGGVITD 256 >gnl|CDD|182848 PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional. Length = 246 Score = 66.3 bits (162), Expect = 8e-12 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 8/104 (7%) Query: 66 SSPVCDADIAVNDYLESFLRPLRPAYGWLSEETDDDL-QRLNYETLFVVDPIDGTRAFIE 124 SPV ADIA + ++ LR L P LSEE R +++ ++VDP+DGT+ FI+ Sbjct: 34 DSPVTAADIAAHTVIKDGLRTLTPDIPVLSEEDPPAWEVRQHWQRYWLVDPLDGTKEFIK 93 Query: 125 GRNEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGK 168 E+ +++A++ G+PV+GVV+A + M S GK Sbjct: 94 RNGEFTVNIALIEQGKPVLGVVYAPVMNV-------MYSAAEGK 130 >gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed. Length = 263 Score = 64.9 bits (159), Expect = 3e-11 Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 36/217 (16%) Query: 73 DIAVNDYLESFLRPLRPAYGWLSEE---TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEW 129 DI + L+PL +SEE + E V+DP+DGT I G + Sbjct: 52 DIIL-----EVLKPLGRCVNIISEELGEIVGN----GPEYTVVLDPLDGTYNAINGIPFY 102 Query: 130 CISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVS 189 IS+AV G+PV G V+ A G + G + NGK I VS + S VS Sbjct: 103 AISIAVFKGGKPVYGYVYNLATGDFYEAIPGKGAYLNGKPIKVSKTS-----ELNESAVS 157 Query: 190 LKGLDSYVRFRRQSSISSLC-----LRIL--------MIASGEVDVLIVDRNA-NDWDLA 235 + Y R + L +RIL +ASG +D + RN D+A Sbjct: 158 I-----YGYRRGKERTVKLGRKVRRVRILGAIALELCYVASGRLDAFVDVRNYLRVTDIA 212 Query: 236 AADLLLECSGGALVDIDRKLLTYNRSQVNHEVLFASA 272 A L+ E +GG + D D L + L A+ Sbjct: 213 AGKLICEEAGGIVTDEDGNELKLPLNVTERTNLIAAN 249 >gnl|CDD|178338 PLN02737, PLN02737, inositol monophosphatase family protein. Length = 363 Score = 61.7 bits (150), Expect = 2e-10 Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 52/260 (20%) Query: 35 LDIVRSAVQGASTVAMQYFLRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRPAYGWL 94 L + A + + V M+ + N+ +K + V D D A + +R P + L Sbjct: 80 LAVAELAAKTGAEVVMEAVNKPRNISYK-GLTDLVTDTDKASEAAILEVVRKNFPDHLIL 138 Query: 95 SEE------TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHA 148 EE + D L+ +DP+DGT F G + +SV V+ G P V Sbjct: 139 GEEGGVIGDSSSDY-------LWCIDPLDGTTNFAHGYPSFAVSVGVLFRGTPAAATVVE 191 Query: 149 SALG------KEFFVSVGMKSTCNGKNISVS-SNQMSDSLAIM----------ASDVSLK 191 G + F S G + CNG+ I VS ++++ SL + A+++ L Sbjct: 192 FVGGPMCWNTRTFSASAGGGAFCNGQKIHVSQTDKVERSLLVTGFGYEHDDAWATNIEL- 250 Query: 192 GLDSYVRFRRQSSISSLCLRILMIASGEVDVL-----IVDR----NANDWDLAAADLLLE 242 + + + + + VD+ IV+ WD+AA L++E Sbjct: 251 ----------FKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLIVE 300 Query: 243 CSGGALVDID-RKLLTYNRS 261 +GG + +D K ++RS Sbjct: 301 EAGGTVTRMDGGKFSVFDRS 320 >gnl|CDD|178168 PLN02553, PLN02553, inositol-phosphate phosphatase. Length = 270 Score = 60.9 bits (148), Expect = 4e-10 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 21/199 (10%) Query: 69 VCDADIAVNDYLESFLRPLRPAYGWLSEETD--DDLQRLNYETLFVVDPIDGTRAFIEGR 126 V + D A D + + L+ P++ ++ EET L E ++VDP+DGT F+ G Sbjct: 44 VTETDKACEDLIFNHLKQAFPSHKFIGEETTAASGGTELTDEPTWIVDPLDGTTNFVHGF 103 Query: 127 NEWCISVAVVHHGRPVIGVVHASALGKEFFVSVGMKSTC-NGKNISVSSNQMSDSLAIMA 185 C+S+ + PV+GVV+ L E F +V K NGK I SS Q A++A Sbjct: 104 PFVCVSIGLTIGKVPVVGVVYNPIL-DELFTAVKGKGAFLNGKPIKASS-QSELGKALLA 161 Query: 186 SDVSLK--------------GLDSYVRFRRQSSISSLCLRILMIASGEVDVLIVDRNAND 231 ++V K L VR R S S L + +A G +D+ Sbjct: 162 TEVGTKRDKATVDATTNRINALLYKVRSLRMS--GSCALNLCGVACGRLDIFYEIGFGGP 219 Query: 232 WDLAAADLLLECSGGALVD 250 WD+AA ++++ +GG + D Sbjct: 220 WDVAAGAVIVKEAGGLVFD 238 >gnl|CDD|182704 PRK10757, PRK10757, inositol monophosphatase; Provisional. Length = 267 Score = 52.5 bits (126), Expect = 1e-07 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 36/235 (15%) Query: 38 VRSAVQGASTVAMQYFLRSPN-VWWKHEGSSP-VCDADIAVNDYLESFLRPLRPAYGWLS 95 VR+A + + +A Y +P+ V +GS+ V + D A + +R P + ++ Sbjct: 9 VRAARKAGNLIAKNY--ETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHTIIT 66 Query: 96 EE------TDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHAS 149 EE D D+Q +V+DP+DGT FI+ + +S+AV GR + VV+ Sbjct: 67 EESGELEGEDQDVQ-------WVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDP 119 Query: 150 ALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKG---LDSYVR-------- 198 + F + G + NG + S+ + D I+A+ K +Y+ Sbjct: 120 MRNELFTATRGQGAQLNGYRLRGSTARDLDG-TILATGFPFKAKQHATTYINIVGKLFTE 178 Query: 199 ---FRRQSSISSLCLRILMIASGEVDVLIVDRNANDWDLAAADLLLECSGGALVD 250 FRR S + L + +A+G VD + WD AA +LL+ +GG + D Sbjct: 179 CADFRRTGSAA---LDLAYVAAGRVDGFF-EIGLKPWDFAAGELLVREAGGIVSD 229 >gnl|CDD|184490 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional. Length = 569 Score = 42.0 bits (99), Expect = 2e-04 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 31/187 (16%) Query: 108 ETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPV-----------------IGVVHASA 150 E +FV+DPIDGT ++ + S+A+ +GVV A Sbjct: 81 EYIFVLDPIDGTYNALKDIPIYSASIAIAKIDGFDKKIKEFIGKNLTINDLEVGVVKNIA 140 Query: 151 LGKEFFVSVG----MKSTCNGKNISVS--SNQMSDSLAIMASDVSLKGLD--SYVRFRRQ 202 G ++ G + K I +S SN S+ + A +SL L + RR Sbjct: 141 TGDTYYAEKGEGAYLLKKGEKKKIEISNISNLKDASIGLFAYGLSLDTLKFIKDRKVRRI 200 Query: 203 SSISSLCLRILMIASGEVDVLI-VDRNANDWDLAAADLLLECSGGALVD-----IDRKLL 256 S+ L + +ASG +D I V+ D+AA ++ + +GG + + ++ KL Sbjct: 201 RLFGSIALEMCYVASGALDAFINVNETTRLCDIAAGYVICKEAGGIITNKNGKPLNMKLD 260 Query: 257 TYNRSQV 263 ++ V Sbjct: 261 INEKTSV 267 >gnl|CDD|162304 TIGR01330, bisphos_HAL2, 3'(2'),5'-bisphosphate nucleotidase, HAL2 family. Some members of this family are active also as inositol 1-monophosphatase. Length = 353 Score = 36.8 bits (85), Expect = 0.007 Identities = 14/36 (38%), Positives = 29/36 (80%), Gaps = 1/36 (2%) Query: 111 FVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVV 146 +V+DPIDGT+ F+ G +++ + +A++ +G+ V+GV+ Sbjct: 133 WVLDPIDGTKGFLRG-DQYAVCLALIENGKVVLGVI 167 >gnl|CDD|178436 PLN02843, PLN02843, isoleucyl-tRNA synthetase. Length = 974 Score = 29.0 bits (65), Expect = 1.4 Identities = 8/13 (61%), Positives = 11/13 (84%) Query: 120 RAFIEGRNEWCIS 132 RA + GR++WCIS Sbjct: 460 RAMVSGRSDWCIS 472 >gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase. Length = 335 Score = 27.4 bits (61), Expect = 3.9 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 119 TRAFIEGRNEWCISVAVVHHGRPVIGVVHASALGKEFF 156 TR E EW + +V+HG P + +GKEFF Sbjct: 57 TRLIAEASKEWGM-FQIVNHGIPSEVISKLQKVGKEFF 93 >gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation. Length = 187 Score = 27.4 bits (61), Expect = 4.8 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 139 GRPVI-GVVHASALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLK 191 GRP I +V A G + + + + G ++S +N M+DS +MA+ +L+ Sbjct: 61 GRPAINTIVEAEPFGPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLR 114 >gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. Length = 678 Score = 26.8 bits (60), Expect = 5.8 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 7/31 (22%) Query: 89 PAYG----WLSEETDDDLQRLNYETLFVVDP 115 PA+G W+SE+ ++ +RL Y VVDP Sbjct: 441 PAFGLPAYWISEKNKEEAERLGYT---VVDP 468 >gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain. Length = 206 Score = 27.1 bits (60), Expect = 6.2 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 76 VNDYLESFLRPLRPAYGWLSEETDDDL 102 V LE FL P Y W++ + D L Sbjct: 114 VGRQLEEFLNQSSPFYFWMNGDRIDSL 140 >gnl|CDD|181583 PRK08927, fliI, flagellum-specific ATP synthase; Validated. Length = 442 Score = 26.9 bits (60), Expect = 6.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 65 GSSPVCDADIAVNDYLESFLR 85 GS P D I +N LE+FLR Sbjct: 396 GSDPEVDEAIRLNPALEAFLR 416 >gnl|CDD|178235 PLN02628, PLN02628, fructose-1,6-bisphosphatase family protein. Length = 351 Score = 26.3 bits (58), Expect = 8.9 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 73 DIAVNDYLESFLRPLRPAYGWLSEETDDDLQRLNYETLFVV--DPIDGTRAF 122 DI N+ + S LR SEE DD + + +VV DP+DG+R Sbjct: 83 DIVSNEIILSSLRNSGKVAVMASEE-DDAPIWIGDDGPYVVVFDPLDGSRNI 133 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.136 0.420 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,607,251 Number of extensions: 286015 Number of successful extensions: 585 Number of sequences better than 10.0: 1 Number of HSP's gapped: 573 Number of HSP's successfully gapped: 21 Length of query: 286 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 194 Effective length of database: 4,006,537 Effective search space: 777268178 Effective search space used: 777268178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (25.9 bits)