RPSBLAST alignment of GI: 254780404 and MMDB domain: 1vdw_A_

>1vdw_A (A:) Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii}Length = 254
 Score =  111 bits (279), Expect = 7e-26
 Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 10/245 (4%)

Query: 31  WKQDLDIVRSAVQGASTVAMQYF--LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLR 88
            K    I    ++      M  F   ++                D    + + S  +   
Sbjct: 3   VKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFK--D 60

Query: 89  PAYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHA 148
                +SEE          +   VVDP+DG+  FI G   + +SVA+ H   P+   ++ 
Sbjct: 61  LGVNVVSEE--IGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYE 118

Query: 149 SALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISSL 208
             + + +    G  S  NG+ I V       S++        K +D   R R   +I   
Sbjct: 119 PIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRTLGAI--- 175

Query: 209 CLRILMIASGEVDV-LIVDRNANDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHEV 267
            L +  +A G +D  + +       D+AA  ++   +G  + D+D K +    S      
Sbjct: 176 ALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVN 235

Query: 268 LFASA 272
           + A+ 
Sbjct: 236 IIAAN 240