RPSBLAST alignment of GI: 254780404 and protein with PDBid: 1vdw

>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1 Length = 254

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 51/244 (20%), Positives = 92/244 (37%), Gaps = 10/244 (4%)

Query: 32  KQDLDIVRSAVQGASTVAMQYF--LRSPNVWWKHEGSSPVCDADIAVNDYLESFLRPLRP 89
           K    I    ++      M  F   ++                D    + + S  + L  
Sbjct: 4   KTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV 63

Query: 90  AYGWLSEETDDDLQRLNYETLFVVDPIDGTRAFIEGRNEWCISVAVVHHGRPVIGVVHAS 149
               +SEE     Q    +   VVDP+DG+  FI G   + +SVA+ H   P+   ++  
Sbjct: 64  --NVVSEEIGRIDQ--GSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEP 119

Query: 150 ALGKEFFVSVGMKSTCNGKNISVSSNQMSDSLAIMASDVSLKGLDSYVRFRRQSSISSLC 209
            + + +    G  S  NG+ I V       S++        K +D   R R    + ++ 
Sbjct: 120 IVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRT---LGAIA 176

Query: 210 LRILMIASGEVDVLIVDRNA-NDWDLAAADLLLECSGGALVDIDRKLLTYNRSQVNHEVL 268
           L +  +A G +D ++  RN     D+AA  ++   +G  + D+D K +    S      +
Sbjct: 177 LELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFSATEKVNI 236

Query: 269 FASA 272
            A+ 
Sbjct: 237 IAAN 240