HHsearch alignment for GI: 254780405 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.66 E-value=8.4e-05 Score=49.36 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCC
Q ss_conf 87763336455896786110012221001101687330111000123566764200133221002234-45665421003
Q gi|254780405|r 37 DILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF-RDVLRLGKIGN 115 (189)
Q Consensus 37 niL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~-~D~~~~~~~~~ 115 (189)
T Consensus 69 ~ale-~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~------rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 69 KALE-EFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP------RVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHH-HCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHCCC------CEEEEECCCHHHCCHHHC
T ss_conf 9999-648688997899826787629999987587479999703774378673598------479985278311898781
Q ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 44443101513431000288898887448888974999
Q gi|254780405|r 116 ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 116 ~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
T Consensus 142 ~~~~d~~v~DvSF--ISL~~iLp~l~--~l~~~~~~~v 175 (245)
T COG1189 142 TEKPDLIVIDVSF--ISLKLILPALL--LLLKDGGDLV 175 (245)
T ss_pred CCCCCEEEEEEEH--HHHHHHHHHHH--HHCCCCCEEE
T ss_conf 7677847996423--31998889999--7427886389