HHsearch alignment for GI: 254780405 and conserved domain: COG2265

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=99.62  E-value=9.1e-16  Score=114.42  Aligned_cols=140  Identities=17%  Similarity=0.303  Sum_probs=104.3

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             67443788886778589999999877633364558967861100122210011016873301110001235667642001
Q gi|254780405|r   14 RLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL   93 (189)
Q Consensus        14 ~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~   93 (189)
T Consensus       261 ~~~~~~~~sF~Q~N~~-~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l-~lA~~~~~V~gvEi~~~aV~~A~~NA~~  337 (432)
T COG2265         261 VSFQISPRSFFQVNPA-VAEKLYETALEWLE-LAGGERVLDLYCGVGTFGL-PLAKRVKKVHGVEISPEAVEAAQENAAA  337 (432)
T ss_pred             EEEEECCCCCEEECHH-HHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHH-HHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             3887579974133999-99999999999974-3699779993558870135-5312465799996489999999999997


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf             332210022344566542100-34444310151343100028889888744888897499998177888
Q gi|254780405|r   94 LGVEKNCNIFFRDVLRLGKIG-NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC  161 (189)
Q Consensus        94 ~~~~~~~~ii~~D~~~~~~~~-~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~  161 (189)
T Consensus       338 n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-R~G~~~~~lk~l~~---~~p~~IvYVSCNP~Tl  401 (432)
T COG2265         338 NGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP-RAGADREVLKQLAK---LKPKRIVYVSCNPATL  401 (432)
T ss_pred             CCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHH---CCCCCEEEEECCHHHH
T ss_conf             39887-79995868888651002579998998999-99999899999985---5898689997687888