HHsearch alignment for GI: 254780405 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=99.62 E-value=9.1e-16 Score=114.42 Aligned_cols=140 Identities=17% Similarity=0.303 Sum_probs=104.3
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67443788886778589999999877633364558967861100122210011016873301110001235667642001
Q gi|254780405|r 14 RLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 14 ~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
T Consensus 261 ~~~~~~~~sF~Q~N~~-~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l-~lA~~~~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 261 VSFQISPRSFFQVNPA-VAEKLYETALEWLE-LAGGERVLDLYCGVGTFGL-PLAKRVKKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred EEEEECCCCCEEECHH-HHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHH-HHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 3887579974133999-99999999999974-3699779993558870135-5312465799996489999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 332210022344566542100-34444310151343100028889888744888897499998177888
Q gi|254780405|r 94 LGVEKNCNIFFRDVLRLGKIG-NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 94 ~~~~~~~~ii~~D~~~~~~~~-~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 161 (189)
T Consensus 338 n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-R~G~~~~~lk~l~~---~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 338 NGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP-RAGADREVLKQLAK---LKPKRIVYVSCNPATL 401 (432)
T ss_pred CCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHH---CCCCCEEEEECCHHHH
T ss_conf 39887-79995868888651002579998998999-99999899999985---5898689997687888