HHsearch alignment for GI: 254780405 and conserved domain: PRK00517
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed.
Probab=99.61 E-value=5.5e-16 Score=115.73 Aligned_cols=140 Identities=17% Similarity=0.290 Sum_probs=101.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88867785899999998776333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
T Consensus 142 GTG~H~TT~lcl~~l~~~~-------~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~ 214 (298)
T PRK00517 142 GTGTHPTTRLCLEWLEKLV-------LPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRL 214 (298)
T ss_pred CCCCCHHHHHHHHHHHHHC-------CCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCE
T ss_conf 6777747999999998435-------468868871577069999999749984999989899999999999986998426
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEE----CCCCCCCC--CCCCCEEEE
Q ss_conf 223445665421003444431015134310002888988874--4888897499998----17788867--578857999
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIE----EYAGTCIS--VGAAFHFLQ 172 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE----~~~~~~~~--~~~~~~~~~ 172 (189)
T Consensus 215 ~~~~~~~~-----~~~~~~DlvvAN------Ila~vl~~l~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~ 283 (298)
T PRK00517 215 ELYLPEDQ-----PLEGKADVIVAN------ILANPLIELAPDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDE 283 (298)
T ss_pred EEECCCCC-----CCCCCCCEEEEE------CCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 89616643-----446764689973------1589999999999997389979999278488999999999987998978
Q ss_pred EEECCC
Q ss_conf 834185
Q gi|254780405|r 173 ERKYGD 178 (189)
Q Consensus 173 ~k~yG~ 178 (189)
T Consensus 284 ~~~~~~ 289 (298)
T PRK00517 284 VAEREE 289 (298)
T ss_pred EEEECC
T ss_conf 860398