HHsearch alignment for GI: 254780405 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=99.71 E-value=1.3e-17 Score=125.35 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHH
Q ss_conf 867785899999998776333645589678611001222100110168733011100012356676420013322-1002
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCN 101 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ 101 (189)
T Consensus 539 DhR~~R~~i~~~------------a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~ 606 (716)
T PRK11783 539 DHRPTRRMIGQM------------AKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHR 606 (716)
T ss_pred CCHHHHHHHHHH------------HCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 437999999997------------07884643122256102133527961227862708799999999985499963473
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHH-HH-----------CCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 234456654210034444310151343-10-----------00288898887448888974999981778
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLVYLDPPY-GQ-----------GLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiIf~DPPY-~~-----------~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
T Consensus 607 ~v~aD~~~wl~~~-~~~fDli~~DPPtFSnSk~m~~~~dvqrDh~~li~~~--~~~L~~~G~l~FS~N~r 673 (716)
T PRK11783 607 FIQADCLAWLKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKLA--MRLLRPGGTLYFSNNKR 673 (716)
T ss_pred EEECCHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHCCCCCEEEEECCCC
T ss_conf 8964089999857-7766789988999987666788632203099999999--98608996899962887