HHsearch alignment for GI: 254780405 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=98.55 E-value=6.1e-08 Score=68.00 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100122210--01101687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
T Consensus 113 pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~-n~~vt~~d~~~~~~~~-~~~FD~ILvD 190 (471)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL-PEMFDAILLD 190 (471)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHC-CCCCCEEEEC
T ss_conf 9998999577854899999997589966999838899999999999971998-4799935866740323-0106679987
Q ss_pred HHHH-HC-----------CHHHHH-------HHHH--HCCCCCCCEEEEE
Q ss_conf 3431-00-----------028889-------8887--4488889749999
Q gi|254780405|r 126 PPYG-QG-----------LAQQAL-------AIID--KEGWLEPNALVII 154 (189)
Q Consensus 126 PPY~-~~-----------~~~~~l-------~~l~--~~~~L~~~gliii 154 (189)
T Consensus 191 aPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVY 240 (471)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY 240 (471)
T ss_pred CCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88888733555975764189879999999999999999987388968999