HHsearch alignment for GI: 254780405 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.60 E-value=8.8e-16 Score=114.51 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=104.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 888867785899999998776333645589--678611001222100110168733011100012356676420013322
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDS--TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE 97 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~--~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~ 97 (189)
T Consensus 173 FGTGtH~TT~LCLe~L~~-------~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~ 245 (330)
T TIGR00406 173 FGTGTHPTTSLCLELLED-------LDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS 245 (330)
T ss_pred CCCCCCHHHHHHHHHHHC-------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 688974578999998740-------1477766547871267178999999751231122137728999999768745886
Q ss_pred CCHHHHHHH-HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEE----ECCCCCCCC--CCCCC
Q ss_conf 100223445-665421003444431015134310002888988874--488889749999----817788867--57885
Q gi|254780405|r 98 KNCNIFFRD-VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVII----EEYAGTCIS--VGAAF 168 (189)
Q Consensus 98 ~~~~ii~~D-~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliii----E~~~~~~~~--~~~~~ 168 (189)
T Consensus 246 ~~~~~~~~~~vPe~~~-~~e~~~DViVA------NiLA~vi~~L~p~~~~L~~~~G~lilSGIl~~~~~sV~~ay~q~GF 318 (330)
T TIGR00406 246 DRLQVKLENSVPELEQ-PIEGKADVIVA------NILAEVIKELYPQFSRLVKPGGHLILSGILETQAQSVCEAYEQAGF 318 (330)
T ss_pred HHHHHHHCCCCCCCCC-CCCCCCCEEEE------CCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 4576432057875345-32256675788------0024578764135513106899657413476479999999855794
Q ss_pred EEEE
Q ss_conf 7999
Q gi|254780405|r 169 HFLQ 172 (189)
Q Consensus 169 ~~~~ 172 (189)
T Consensus 319 ~~~~ 322 (330)
T TIGR00406 319 TVVE 322 (330)
T ss_pred EEHH
T ss_conf 6343