HHsearch alignment for GI: 254780405 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=97.00 E-value=0.00032 Score=45.95 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 589999999877633364558967861100122210011016873301110001235667642001332210022
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
T Consensus 62 G~KL~~~----L~~-F~~~vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~ 131 (240)
T TIGR00478 62 GEKLKEA----LEE-FEVDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNI 131 (240)
T ss_pred HHHHHHH----CCC-CCEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCCC
T ss_conf 5899985----354-331337868997056730489999870584677786032133432363662689645787