HHsearch alignment for GI: 254780405 and conserved domain: TIGR00675

>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=97.23  E-value=8.1e-05  Score=49.44  Aligned_cols=71  Identities=20%  Similarity=0.380  Sum_probs=54.8

Q ss_pred             EEECCCCCCC--CHHHHHC----CCCCCHHHHHH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-----CCCC
Q ss_conf             8611001222--1001101----68733011100--01235667642001332210022344566542100-----3444
Q gi|254780405|r   52 MLNIFAGTGS--VGFEALS----RGCHYVLFVDN--NSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG-----NISP  118 (189)
Q Consensus        52 vlDlfaGsG~--lgiEalS----rGA~~v~~vE~--~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~-----~~~~  118 (189)
T Consensus         1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~-----~~~~~~~~DI~~i~~~~~~~~~~~Pd   75 (425)
T TIGR00675         1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFG-----NDEKVPFGDITKISPSDLLRHIAIPD   75 (425)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCC-----CCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             9454255135789999741014111378872016687789999997647-----88420677633366011500124886


Q ss_pred             CCCCCCCHH
Q ss_conf             431015134
Q gi|254780405|r  119 FQLVYLDPP  127 (189)
Q Consensus       119 fDiIf~DPP  127 (189)
T Consensus        76 ~D~L~gGFP   84 (425)
T TIGR00675        76 FDILLGGFP   84 (425)
T ss_pred             EEEEECCCC
T ss_conf             789963899