HHsearch alignment for GI: 254780405 and conserved domain: TIGR01177

>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..

Probab=97.98  E-value=9.5e-06  Score=54.97  Aligned_cols=127  Identities=22%  Similarity=0.240  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCC-CHHHHH
Q ss_conf             858999999987763336455896786110012221001101687330111-000123566764200133221-002234
Q gi|254780405|r   27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFV-DNNSESIRLIRRNSELLGVEK-NCNIFF  104 (189)
Q Consensus        27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~v-E~~~~a~~~lk~N~~~~~~~~-~~~ii~  104 (189)
T Consensus       187 ~~p~~~~~~~~~~~-----~~~g~~~~dp~~g~gg~~~~~gl~g~-~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~  260 (358)
T TIGR01177       187 LDPKLARALVNLAG-----VKEGDRLLDPFCGTGGFLIEAGLLGA-KPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKR  260 (358)
T ss_pred             CCHHHHHHHHHHHH-----CCCCCCEECCCCCCCCHHHHHHHHCC-CCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEE
T ss_conf             55467777765420-----24675100422266603323333211-0002440356764252111333055431567640


Q ss_pred             HHHHHHHHHCCC--CCCCCCCCCHHHHHC----------CHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf             456654210034--444310151343100----------028889888744888897499998177888
Q gi|254780405|r  105 RDVLRLGKIGNI--SPFQLVYLDPPYGQG----------LAQQALAIIDKEGWLEPNALVIIEEYAGTC  161 (189)
Q Consensus       105 ~D~~~~~~~~~~--~~fDiIf~DPPY~~~----------~~~~~l~~l~~~~~L~~~gliiiE~~~~~~  161 (189)
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~~~~~~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~  327 (358)
T TIGR01177       261 GDAKDLPLRLPGLDESVDAIATDPPYGRSTTAAGDGLEELYEKSLEELH--EVLKGGGWLAVAVPTDLD  327 (358)
T ss_pred             CCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCEEEEEECCCC
T ss_conf             3300111003531011222212565453111221036888888888888--864268717997403346