HHsearch alignment for GI: 254780405 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=98.97 E-value=1.3e-09 Score=77.97 Aligned_cols=140 Identities=19% Similarity=0.324 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH-------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 85899999998776333645589678611001222100110-------16873301110001235667642001332210
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEAL-------SRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEal-------SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
T Consensus 217 TNP~VA~~LYATAr-~WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~-~~lTGIEI~~eAIa~A~~SA~~lGl~-~ 293 (386)
T TIGR02085 217 TNPKVAAQLYATAR-QWVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPD-TQLTGIEIESEAIACAKQSAKILGLE-N 293 (386)
T ss_pred CCHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEEEEECHHHHHHHHHHHHHHCHH-H
T ss_conf 78788988768899-999745711032010465412789989876415897-04431343778999999999873533-2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCCEEEEE
Q ss_conf 02234456654210034444310151343100028889888744888897499998177888---675788579998
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC---ISVGAAFHFLQE 173 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~---~~~~~~~~~~~~ 173 (189)
T Consensus 294 ~~F~aLDsa~f~~~~~e~~PeLVlVNPP-RRGiG~eL~~~L~~---~aP~fILYSSCNa~TM~KDi~~L~~Y~~~rv 366 (386)
T TIGR02085 294 LSFAALDSAKFATAQAESVPELVLVNPP-RRGIGKELCDYLSQ---LAPKFILYSSCNAQTMAKDIAELSGYKIERV 366 (386)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 1045445799998623688965776788-88876068999975---0886266216772258999975568835776