HHsearch alignment for GI: 254780405 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=99.30 E-value=1.6e-12 Score=95.19 Aligned_cols=131 Identities=18% Similarity=0.305 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88886778589999999877633364558967861100122210011016873301110001235667642001332210
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
T Consensus 177 E~sFtQPNa~-vn~kMLeWA~~~~-~~~~g~DLLELYCGNGNFsL-aLA~~f~rVLATEiaK~SV~aAq~Ni~~N~i-dN 252 (361)
T TIGR02143 177 ENSFTQPNAA-VNQKMLEWALEVT-QNSKGMDLLELYCGNGNFSL-ALAQNFERVLATEIAKPSVNAAQYNIAANKI-DN 252 (361)
T ss_pred CCCCCCCCHH-HHHHHHHHHHHHH-CCCCCCCCCEEECCCCCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC-CC
T ss_conf 7872475189-9999999999983-58888720100026753104-4565333455430240247999999871798-83
Q ss_pred HHHHHHHHHHHHHHCCC----------------CCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 02234456654210034----------------44431015134310002888988874488889749999817788
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNI----------------SPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~----------------~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
T Consensus 253 v~i~RlSAEEft~A~~~~R~F~RL~d~gIdL~~Y~f~tiFVDPP-RaGlD~~t~~Lv~~y-----~rIlYISCNP~T 323 (361)
T TIGR02143 253 VQIIRLSAEEFTEAMNGVREFRRLKDGGIDLKSYNFNTIFVDPP-RAGLDPDTVKLVQKY-----ERILYISCNPET 323 (361)
T ss_pred EEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCHHHHHHHHHC-----CCEEEEECCHHH
T ss_conf 10102327999998603776546566886334202560267798-888898999999625-----987998469689