Query gi|254780405|ref|YP_003064818.1| hypothetical protein CLIBASIA_01450 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs 177 out of 4330
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 19:58:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780405.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10909 rsmD 16S rRNA m(2)G96 100.0 0 0 393.5 13.7 180 2-187 10-190 (198)
2 pfam03602 Cons_hypoth95 Conser 100.0 0 0 380.4 13.6 179 4-185 1-181 (181)
3 COG0742 N6-adenine-specific me 100.0 0 0 378.5 13.1 183 3-188 1-187 (187)
4 TIGR00095 TIGR00095 putative m 100.0 0 0 358.0 7.5 182 1-186 10-209 (210)
5 COG1092 Predicted SAM-dependen 99.8 2E-20 5E-25 142.1 5.7 107 47-155 216-335 (393)
6 TIGR03533 L3_gln_methyl protei 99.8 1.4E-19 3.6E-24 137.0 7.4 143 11-161 87-256 (284)
7 PRK11805 N5-glutamine S-adenos 99.8 3.4E-19 8.6E-24 134.8 7.3 164 11-185 99-295 (307)
8 TIGR03534 RF_mod_HemK protein- 99.8 5.1E-19 1.3E-23 133.7 4.5 139 11-161 55-222 (251)
9 PRK09328 N5-glutamine S-adenos 99.7 5.8E-18 1.5E-22 127.4 7.5 166 11-186 77-275 (277)
10 PRK09329 N5-glutamine S-adenos 99.7 3.6E-17 9.3E-22 122.7 8.3 167 11-187 75-274 (285)
11 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.3E-17 3.3E-22 125.3 5.7 122 23-159 539-673 (716)
12 PRK01544 bifunctional N5-gluta 99.7 4.6E-17 1.2E-21 122.1 7.3 172 11-185 81-302 (503)
13 pfam10672 Methyltrans_SAM S-ad 99.7 2E-17 5.1E-22 124.2 4.7 107 47-155 122-237 (286)
14 COG4123 Predicted O-methyltran 99.7 1.6E-16 4E-21 118.9 7.8 140 10-159 14-173 (248)
15 PRK03522 rumB 23S rRNA methylu 99.6 3E-16 7.7E-21 117.3 6.8 136 30-173 216-354 (375)
16 TIGR00479 rumA 23S rRNA (uraci 99.6 4.5E-16 1.2E-20 116.2 5.5 123 22-160 277-402 (434)
17 COG2890 HemK Methylase of poly 99.6 1E-15 2.6E-20 114.1 7.3 165 10-185 77-275 (280)
18 COG2265 TrmA SAM-dependent met 99.6 9.1E-16 2.3E-20 114.4 6.6 140 14-161 261-401 (432)
19 PRK00517 prmA ribosomal protei 99.6 5.5E-16 1.4E-20 115.7 5.0 140 21-178 142-289 (298)
20 PRK05031 tRNA (uracil-5-)-meth 99.6 6E-16 1.5E-20 115.5 5.2 105 48-160 207-325 (363)
21 pfam06325 PrmA Ribosomal prote 99.6 8.1E-16 2.1E-20 114.7 5.2 139 21-178 140-285 (294)
22 TIGR00406 prmA ribosomal prote 99.6 8.8E-16 2.2E-20 114.5 4.9 139 20-172 173-322 (330)
23 pfam05175 MTS Methyltransferas 99.6 4.4E-16 1.1E-20 116.3 3.3 110 48-161 31-145 (170)
24 pfam05958 tRNA_U5-meth_tr tRNA 99.6 1.2E-15 3.1E-20 113.7 5.1 105 48-160 197-315 (353)
25 COG2263 Predicted RNA methylas 99.6 5.2E-16 1.3E-20 115.9 3.2 98 24-131 24-121 (198)
26 pfam09445 Methyltransf_15 RNA 99.6 2.8E-16 7E-21 117.5 1.5 79 50-129 2-82 (165)
27 PRK13168 rumA 23S rRNA 5-methy 99.6 1.4E-15 3.5E-20 113.3 5.0 120 48-174 294-420 (440)
28 COG2264 PrmA Ribosomal protein 99.6 5.3E-15 1.4E-19 109.8 6.2 139 21-175 142-288 (300)
29 pfam02475 Met_10 Met-10+ like- 99.6 1.8E-15 4.7E-20 112.6 3.3 111 25-153 86-198 (199)
30 pfam01170 UPF0020 Putative RNA 99.5 1.9E-14 5E-19 106.5 6.0 103 48-154 28-140 (171)
31 PRK00377 cbiT cobalt-precorrin 99.5 1.1E-13 2.8E-18 102.1 7.2 120 26-155 23-144 (198)
32 KOG2187 consensus 99.4 6.1E-13 1.6E-17 97.6 8.2 147 6-159 343-493 (534)
33 PRK07402 precorrin-6B methylas 99.4 4.5E-13 1.2E-17 98.4 6.3 118 26-155 23-141 (196)
34 COG1041 Predicted DNA modifica 99.4 2.8E-12 7.1E-17 93.7 10.3 155 22-187 174-345 (347)
35 COG2242 CobL Precorrin-6B meth 99.4 5.7E-13 1.5E-17 97.8 6.0 118 25-155 16-134 (187)
36 TIGR00537 hemK_rel_arch methyl 99.4 3.9E-13 1E-17 98.8 3.3 107 46-159 18-148 (183)
37 KOG2904 consensus 99.4 1.8E-12 4.6E-17 94.8 6.5 144 11-157 112-286 (328)
38 PRK08287 cobalt-precorrin-6Y C 99.3 1.3E-12 3.4E-17 95.6 5.6 115 26-155 13-129 (186)
39 COG2520 Predicted methyltransf 99.3 1.2E-12 3E-17 96.0 4.8 115 25-156 174-289 (341)
40 TIGR02469 CbiT precorrin-6Y C5 99.3 2.4E-12 6.1E-17 94.1 5.9 119 26-155 2-132 (135)
41 TIGR02143 trmA_only tRNA (urac 99.3 1.6E-12 4E-17 95.2 4.0 131 20-160 177-323 (361)
42 cd02440 AdoMet_MTases S-adenos 99.3 2.2E-12 5.5E-17 94.4 3.9 101 51-155 1-103 (107)
43 COG2813 RsmC 16S RNA G1207 met 99.3 4.3E-12 1.1E-16 92.6 5.1 129 15-155 130-265 (300)
44 PRK07580 Mg-protoporphyrin IX 99.3 8E-12 2E-16 91.0 5.8 112 23-142 40-154 (230)
45 PRK09489 rsmC 16S ribosomal RN 99.3 2.7E-12 7E-17 93.8 2.9 108 46-160 195-307 (342)
46 KOG3420 consensus 99.2 3.9E-12 1E-16 92.8 2.6 156 25-188 26-184 (185)
47 TIGR01983 UbiG ubiquinone bios 99.2 1.2E-11 3.2E-16 89.9 5.1 100 48-155 84-195 (275)
48 COG0116 Predicted N6-adenine-s 99.2 1.2E-11 3.1E-16 89.9 4.8 124 27-155 171-343 (381)
49 TIGR02021 BchM-ChlM magnesium 99.2 2.6E-11 6.6E-16 88.0 6.2 113 23-142 31-147 (224)
50 KOG1499 consensus 99.2 2E-11 5E-16 88.7 3.4 105 44-153 56-164 (346)
51 COG2521 Predicted archaeal met 99.1 1.2E-11 3E-16 90.0 1.9 119 22-153 115-242 (287)
52 PRK05134 3-demethylubiquinone- 99.1 1.2E-10 3E-15 84.1 5.6 106 46-157 46-152 (233)
53 pfam01596 Methyltransf_3 O-met 99.1 1.6E-10 4E-15 83.3 5.2 117 30-155 30-153 (204)
54 PRK00216 ubiE ubiquinone/menaq 99.0 1.7E-10 4.4E-15 83.1 3.6 118 30-158 38-161 (239)
55 PRK08317 hypothetical protein; 99.0 5.3E-10 1.4E-14 80.2 4.5 121 25-156 1-124 (241)
56 COG4122 Predicted O-methyltran 99.0 9.3E-10 2.4E-14 78.8 5.6 120 27-155 42-165 (219)
57 TIGR02085 meth_trns_rumB 23S r 99.0 1.3E-09 3.2E-14 78.0 6.1 140 27-173 217-366 (386)
58 pfam02384 N6_Mtase N-6 DNA Met 99.0 9.3E-10 2.4E-14 78.8 5.3 100 26-130 29-137 (312)
59 PRK04338 N(2),N(2)-dimethylgua 99.0 5.7E-10 1.5E-14 80.0 3.9 164 4-181 3-176 (376)
60 pfam01209 Ubie_methyltran ubiE 98.9 5.2E-10 1.3E-14 80.2 3.5 106 47-157 46-155 (233)
61 PRK11036 putative metallothion 98.9 2.7E-09 6.9E-14 76.0 7.0 120 28-154 27-147 (256)
62 KOG2730 consensus 98.9 3.3E-10 8.5E-15 81.4 2.3 100 26-130 76-177 (263)
63 KOG1500 consensus 98.9 5.8E-10 1.5E-14 80.0 3.2 106 44-154 173-280 (517)
64 pfam02005 TRM N2,N2-dimethylgu 98.9 1.4E-09 3.4E-14 77.8 4.7 147 24-180 22-175 (375)
65 COG2226 UbiE Methylase involve 98.9 1.5E-09 3.9E-14 77.5 4.4 122 29-160 37-161 (238)
66 pfam10294 Methyltransf_16 Puta 98.9 1.6E-09 4E-14 77.4 3.9 113 45-160 41-158 (171)
67 PRK01683 trans-aconitate 2-met 98.9 2.9E-09 7.5E-14 75.8 4.8 101 48-160 31-134 (252)
68 KOG3191 consensus 98.9 7.5E-09 1.9E-13 73.4 6.7 134 49-187 44-207 (209)
69 smart00828 PKS_MT Methyltransf 98.9 2.3E-09 5.9E-14 76.4 4.1 101 50-155 1-103 (224)
70 COG2519 GCD14 tRNA(1-methylade 98.8 1.5E-09 3.8E-14 77.5 3.0 100 47-156 93-195 (256)
71 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 2.8E-09 7.2E-14 75.9 2.9 109 48-161 43-167 (242)
72 PRK10901 16S rRNA methyltransf 98.7 6.2E-09 1.6E-13 73.9 3.3 106 47-155 244-372 (428)
73 pfam03848 TehB Tellurite resis 98.7 2.8E-08 7.1E-13 70.0 6.1 120 20-160 11-137 (192)
74 PRK10258 biotin biosynthesis p 98.7 2.1E-08 5.2E-13 70.8 5.1 111 30-156 29-140 (251)
75 pfam08704 GCD14 tRNA methyltra 98.7 2.6E-08 6.6E-13 70.2 5.5 136 10-153 51-205 (309)
76 COG2227 UbiG 2-polyprenyl-3-me 98.7 2.9E-08 7.5E-13 69.9 5.7 103 46-155 57-160 (243)
77 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.3E-09 8.3E-14 75.5 0.7 105 28-132 170-321 (716)
78 pfam02353 CMAS Cyclopropane-fa 98.7 2E-08 5.2E-13 70.8 4.7 101 48-156 62-166 (273)
79 PRK11873 arsM arsenite S-adeno 98.7 7.3E-09 1.9E-13 73.5 2.1 101 48-155 73-178 (258)
80 TIGR02072 BioC biotin biosynth 98.7 8.8E-08 2.2E-12 67.0 7.4 121 31-156 19-147 (272)
81 PRK11207 tellurite resistance 98.7 8.4E-08 2.1E-12 67.2 7.0 113 23-155 14-133 (198)
82 COG1867 TRM1 N2,N2-dimethylgua 98.6 2.2E-08 5.6E-13 70.6 3.4 140 1-154 1-152 (380)
83 pfam08241 Methyltransf_11 Meth 98.6 2.2E-08 5.6E-13 70.6 2.5 94 53-154 1-95 (95)
84 PRK00312 pcm protein-L-isoaspa 98.6 2.5E-08 6.5E-13 70.2 2.7 96 48-154 78-173 (213)
85 PTZ00338 dimethyladenosine tra 98.6 4.5E-08 1.1E-12 68.8 3.5 101 48-155 38-138 (296)
86 pfam01189 Nol1_Nop2_Fmu NOL1/N 98.6 4.5E-08 1.2E-12 68.7 3.5 108 47-155 83-213 (277)
87 PRK11933 yebU rRNA (cytosine-C 98.6 6.1E-08 1.5E-12 68.0 3.8 105 48-154 113-240 (471)
88 TIGR00755 ksgA dimethyladenosi 98.6 7.8E-08 2E-12 67.3 4.4 119 28-155 14-139 (277)
89 COG0030 KsgA Dimethyladenosine 98.6 5.2E-08 1.3E-12 68.4 3.5 101 48-155 30-130 (259)
90 pfam01135 PCMT Protein-L-isoas 98.5 2.4E-08 6.1E-13 70.4 1.3 97 48-155 73-172 (205)
91 PRK13944 protein-L-isoaspartat 98.5 3.4E-08 8.6E-13 69.5 2.1 99 48-155 72-172 (205)
92 pfam01564 Spermine_synth Sperm 98.5 9.2E-08 2.4E-12 66.9 4.3 108 48-158 75-191 (240)
93 PRK03612 spermidine synthase; 98.5 1.3E-07 3.3E-12 66.0 4.6 108 48-158 293-413 (516)
94 COG0144 Sun tRNA and rRNA cyto 98.5 1.3E-07 3.3E-12 66.0 4.3 108 47-155 155-287 (355)
95 PTZ00098 phosphoethanolamine N 98.5 1.8E-07 4.7E-12 65.2 4.8 105 45-157 48-157 (263)
96 PRK13942 protein-L-isoaspartat 98.4 6E-08 1.5E-12 68.0 1.6 97 48-155 76-175 (214)
97 TIGR00536 hemK_fam methyltrans 98.4 7.3E-07 1.9E-11 61.6 6.9 146 11-160 87-267 (311)
98 COG2518 Pcm Protein-L-isoaspar 98.4 6.4E-08 1.6E-12 67.9 1.0 97 48-155 72-168 (209)
99 KOG2671 consensus 98.4 5.8E-08 1.5E-12 68.1 0.5 81 47-129 207-295 (421)
100 pfam08242 Methyltransf_12 Meth 98.3 2.1E-07 5.4E-12 64.7 2.1 96 53-152 1-98 (98)
101 COG4076 Predicted RNA methylas 98.3 3.5E-07 8.9E-12 63.5 2.9 88 27-124 15-102 (252)
102 PRK12335 tellurite resistance 98.3 1.8E-06 4.5E-11 59.3 6.5 112 22-154 105-223 (289)
103 TIGR00308 TRM1 N2,N2-dimethylg 98.3 1.5E-07 3.7E-12 65.7 0.6 98 50-154 96-202 (462)
104 pfam04445 DUF548 Protein of un 98.3 2.2E-07 5.5E-12 64.7 1.4 78 50-129 77-162 (235)
105 PRK00811 spermidine synthase; 98.3 8.4E-07 2.1E-11 61.2 4.2 108 48-158 78-195 (283)
106 KOG1227 consensus 98.3 6.7E-07 1.7E-11 61.8 3.5 91 48-141 194-286 (351)
107 COG3897 Predicted methyltransf 98.3 8.4E-07 2.2E-11 61.2 3.7 91 44-141 75-166 (218)
108 smart00650 rADc Ribosomal RNA 98.3 3.2E-07 8.1E-12 63.7 1.5 87 48-142 13-99 (169)
109 cd00315 Cyt_C5_DNA_methylase C 98.2 3.5E-07 8.9E-12 63.5 1.5 71 51-128 2-72 (275)
110 KOG1663 consensus 98.2 1.3E-06 3.2E-11 60.2 4.3 105 46-155 71-182 (237)
111 pfam00398 RrnaAD Ribosomal RNA 98.2 1E-06 2.6E-11 60.7 3.7 101 48-156 30-131 (258)
112 COG2230 Cfa Cyclopropane fatty 98.2 1.1E-06 2.8E-11 60.5 3.8 116 33-156 55-176 (283)
113 TIGR02081 metW methionine bios 98.2 6.6E-07 1.7E-11 61.8 2.3 77 33-125 5-90 (205)
114 PRK13943 protein-L-isoaspartat 98.2 4.6E-07 1.2E-11 62.8 1.2 97 48-155 75-174 (317)
115 pfam08003 Methyltransf_9 Prote 98.2 3.6E-06 9.3E-11 57.4 5.2 103 46-156 113-219 (315)
116 pfam07021 MetW Methionine bios 98.1 1.3E-06 3.3E-11 60.1 2.8 68 48-124 13-81 (193)
117 PRK04457 spermidine synthase; 98.1 1.8E-06 4.6E-11 59.2 3.1 156 25-188 48-219 (262)
118 PRK00274 ksgA dimethyladenosin 98.1 1.1E-06 2.9E-11 60.5 2.1 74 48-129 39-113 (267)
119 KOG1270 consensus 98.1 3.7E-06 9.4E-11 57.4 4.6 106 47-160 88-199 (282)
120 COG0421 SpeE Spermidine syntha 98.1 4.4E-06 1.1E-10 57.0 4.9 105 49-156 77-190 (282)
121 KOG1253 consensus 98.1 1.1E-06 2.9E-11 60.5 1.4 103 47-156 108-216 (525)
122 PRK10742 putative methyltransf 98.1 1.2E-05 3E-10 54.4 6.3 134 50-189 90-250 (250)
123 PHA02056 putative methyltransf 98.0 1.4E-06 3.7E-11 59.8 0.9 78 43-130 58-138 (279)
124 PRK06202 hypothetical protein; 98.0 3.2E-06 8.1E-11 57.8 2.3 101 48-154 61-166 (233)
125 KOG1271 consensus 98.0 9.3E-06 2.4E-10 55.0 4.7 139 31-174 47-204 (227)
126 TIGR01177 TIGR01177 conserved 98.0 9.5E-06 2.4E-10 55.0 4.5 127 27-161 187-327 (358)
127 pfam05971 Methyltransf_10 Prot 98.0 4.9E-06 1.2E-10 56.7 3.0 112 17-131 32-153 (254)
128 pfam00145 DNA_methylase C-5 cy 98.0 2.1E-06 5.5E-11 58.8 1.0 93 51-156 2-109 (319)
129 KOG2078 consensus 98.0 2.2E-06 5.5E-11 58.8 0.9 64 48-112 249-313 (495)
130 PRK00107 gidB glucose-inhibite 97.9 4.9E-05 1.2E-09 50.8 7.5 123 28-159 48-172 (216)
131 pfam01861 DUF43 Protein of unk 97.9 5.4E-06 1.4E-10 56.4 2.4 101 23-131 24-125 (243)
132 KOG1661 consensus 97.9 1.4E-05 3.7E-10 53.9 4.6 111 28-154 69-191 (237)
133 KOG2915 consensus 97.9 7.1E-06 1.8E-10 55.7 3.0 119 7-127 51-186 (314)
134 pfam02527 GidB rRNA small subu 97.9 4E-05 1E-09 51.3 6.6 123 28-159 28-151 (184)
135 COG3963 Phospholipid N-methylt 97.9 1.6E-05 4E-10 53.7 4.3 123 22-157 27-158 (194)
136 COG4976 Predicted methyltransf 97.9 2.4E-05 6.1E-10 52.6 4.9 98 49-156 126-225 (287)
137 PRK01581 speE spermidine synth 97.9 1.5E-05 3.9E-10 53.8 3.8 109 48-158 139-259 (363)
138 COG0270 Dcm Site-specific DNA 97.8 8.8E-06 2.2E-10 55.2 2.4 98 49-156 3-116 (328)
139 KOG2899 consensus 97.8 1.7E-05 4.4E-10 53.4 3.8 110 45-157 55-210 (288)
140 TIGR00446 nop2p NOL1/NOP2/sun 97.8 1.5E-05 3.8E-10 53.8 3.4 80 48-128 77-160 (284)
141 pfam08123 DOT1 Histone methyla 97.8 1.3E-05 3.3E-10 54.2 2.4 104 48-154 42-156 (205)
142 PRK11705 cyclopropane fatty ac 97.8 2.8E-05 7.2E-10 52.2 4.1 97 48-156 167-267 (383)
143 COG3392 Adenine-specific DNA m 97.8 4.7E-05 1.2E-09 50.8 5.2 24 44-67 23-46 (330)
144 KOG1540 consensus 97.8 2.1E-05 5.3E-10 52.9 3.2 109 48-160 100-219 (296)
145 PRK11727 putative SAM-dependen 97.7 2.7E-05 6.9E-10 52.3 3.6 81 48-131 117-205 (326)
146 pfam04378 DUF519 Protein of un 97.7 2.1E-05 5.4E-10 52.9 2.7 101 50-154 59-162 (245)
147 TIGR00138 gidB methyltransfera 97.7 0.00012 3.1E-09 48.4 6.1 130 24-159 18-156 (197)
148 TIGR00417 speE spermidine synt 97.7 5.1E-05 1.3E-09 50.6 4.1 108 48-157 75-196 (284)
149 COG1189 Predicted rRNA methyla 97.7 8.4E-05 2.1E-09 49.4 5.0 106 37-153 69-175 (245)
150 KOG0820 consensus 97.6 1.8E-05 4.5E-10 53.4 1.2 78 48-130 58-135 (315)
151 COG4106 Tam Trans-aconitate me 97.6 0.00017 4.4E-09 47.5 6.0 117 21-159 13-132 (257)
152 KOG4300 consensus 97.6 0.00011 2.8E-09 48.6 5.0 127 28-160 57-187 (252)
153 KOG1122 consensus 97.6 6E-05 1.5E-09 50.2 3.6 145 9-155 196-370 (460)
154 TIGR00080 pimt protein-L-isoas 97.6 2.4E-05 6.2E-10 52.5 1.5 106 35-154 72-185 (228)
155 COG0357 GidB Predicted S-adeno 97.6 0.00019 4.9E-09 47.2 6.0 118 28-153 47-165 (215)
156 PRK00121 trmB tRNA (guanine-N( 97.6 0.00024 6.1E-09 46.7 6.5 139 15-156 9-170 (229)
157 pfam05891 Hydroxy-O-Methy Puta 97.5 0.0001 2.6E-09 48.8 3.5 103 48-155 55-160 (217)
158 PRK05785 hypothetical protein; 97.5 9E-05 2.3E-09 49.2 3.1 64 48-124 51-114 (225)
159 TIGR00477 tehB tellurite resis 97.4 0.00012 3E-09 48.5 2.7 114 21-151 55-172 (239)
160 TIGR02752 MenG_heptapren 2-hep 97.4 7.5E-05 1.9E-09 49.6 1.8 103 47-155 44-150 (231)
161 PRK11524 putative methyltransf 97.4 7.3E-05 1.9E-09 49.7 1.7 44 48-92 208-251 (284)
162 TIGR02987 met_A_Alw26 type II 97.4 7.9E-05 2E-09 49.5 1.6 84 46-129 31-150 (603)
163 PRK11524 putative methyltransf 97.3 7.8E-05 2E-09 49.6 1.5 60 98-157 7-81 (284)
164 pfam03291 Pox_MCEL mRNA cappin 97.3 0.0004 1E-08 45.4 5.0 134 23-158 38-189 (327)
165 COG0286 HsdM Type I restrictio 97.3 0.00012 3.1E-09 48.4 2.3 98 27-129 170-275 (489)
166 pfam01555 N6_N4_Mtase DNA meth 97.3 8.3E-05 2.1E-09 49.4 1.2 42 47-89 180-221 (221)
167 COG1568 Predicted methyltransf 97.3 6.6E-05 1.7E-09 50.0 0.5 101 22-129 131-232 (354)
168 COG2961 ComJ Protein involved 97.3 0.00014 3.6E-09 48.0 2.1 88 52-143 92-182 (279)
169 TIGR00675 dcm DNA-cytosine met 97.2 8.1E-05 2.1E-09 49.4 0.6 71 52-127 1-84 (425)
170 PRK13699 putative methylase; P 97.2 0.00019 5E-09 47.2 2.4 46 47-93 162-207 (227)
171 TIGR00563 rsmB ribosomal RNA s 97.2 0.00028 7.1E-09 46.3 2.9 110 36-154 264-406 (487)
172 pfam05401 NodS Nodulation prot 97.2 0.00025 6.5E-09 46.5 2.6 125 22-160 21-150 (201)
173 TIGR00740 TIGR00740 methyltran 97.2 0.00046 1.2E-08 45.0 3.8 102 46-155 59-168 (247)
174 PRK13699 putative methylase; P 97.1 0.00014 3.6E-09 48.0 0.7 56 101-156 3-72 (227)
175 pfam01728 FtsJ FtsJ-like methy 97.1 0.00073 1.9E-08 43.8 4.2 101 43-155 16-132 (176)
176 KOG2920 consensus 97.1 0.00031 7.8E-09 46.0 2.2 116 34-153 100-231 (282)
177 TIGR00478 tly hemolysin A; Int 97.0 0.00032 8E-09 45.9 1.8 70 28-102 62-131 (240)
178 COG0220 Predicted S-adenosylme 97.0 0.00092 2.4E-08 43.2 4.1 104 49-155 49-163 (227)
179 TIGR00452 TIGR00452 methyltran 97.0 0.0016 4.1E-08 41.7 5.1 109 45-156 118-227 (316)
180 PRK00536 speE spermidine synth 96.9 0.0015 3.8E-08 41.9 4.5 129 13-158 40-173 (262)
181 COG4262 Predicted spermidine s 96.9 0.0013 3.2E-08 42.4 3.9 108 49-158 290-409 (508)
182 KOG2198 consensus 96.9 0.0011 2.9E-08 42.6 3.6 107 48-155 155-295 (375)
183 pfam05185 PRMT5 PRMT5 arginine 96.8 0.0013 3.4E-08 42.2 3.7 98 50-154 188-295 (447)
184 KOG3010 consensus 96.8 0.0032 8.1E-08 40.0 5.7 124 23-158 14-139 (261)
185 PRK06922 hypothetical protein; 96.8 0.0015 3.7E-08 42.0 3.9 109 46-157 418-540 (679)
186 TIGR00091 TIGR00091 tRNA (guan 96.8 0.0026 6.6E-08 40.5 5.0 109 47-157 18-148 (216)
187 KOG4058 consensus 96.8 0.0075 1.9E-07 37.8 7.4 144 26-188 55-198 (199)
188 KOG1501 consensus 96.7 0.00073 1.9E-08 43.8 1.7 64 47-110 65-128 (636)
189 pfam02390 Methyltransf_4 Putat 96.7 0.0025 6.3E-08 40.6 4.3 106 48-156 20-137 (199)
190 COG1743 Adenine-specific DNA m 96.7 0.0007 1.8E-08 43.9 1.4 48 46-94 88-135 (875)
191 pfam09243 Rsm22 Mitochondrial 96.5 0.0082 2.1E-07 37.6 6.1 90 34-129 21-112 (275)
192 KOG0822 consensus 96.3 0.0041 1E-07 39.4 3.5 117 32-154 349-476 (649)
193 KOG2361 consensus 96.2 0.0067 1.7E-07 38.1 4.2 99 51-156 74-183 (264)
194 pfam05219 DREV DREV methyltran 96.1 0.0066 1.7E-07 38.1 3.8 89 48-154 94-186 (265)
195 PRK11188 rrmJ 23S rRNA methylt 96.1 0.0069 1.8E-07 38.0 3.8 99 43-155 46-164 (209)
196 PRK11088 rrmA 23S rRNA methylt 96.1 0.0042 1.1E-07 39.3 2.5 90 48-154 85-179 (272)
197 KOG2912 consensus 96.0 0.0016 4.2E-08 41.7 0.3 75 53-130 107-190 (419)
198 KOG2793 consensus 96.0 0.0049 1.3E-07 38.9 2.7 108 48-160 86-203 (248)
199 PRK10458 DNA cytosine methylas 95.8 0.0046 1.2E-07 39.0 1.9 58 31-91 72-133 (470)
200 pfam11599 AviRa RRNA methyltra 95.8 0.062 1.6E-06 32.3 7.6 165 12-185 18-242 (249)
201 pfam03059 NAS Nicotianamine sy 95.7 0.013 3.2E-07 36.4 3.7 128 55-186 126-272 (277)
202 pfam06080 DUF938 Protein of un 95.7 0.016 4E-07 35.9 4.1 123 25-155 4-137 (201)
203 PRK04266 fibrillarin; Provisio 95.4 0.024 6.1E-07 34.8 4.4 121 25-154 51-174 (226)
204 pfam04816 DUF633 Family of unk 95.3 0.015 3.9E-07 36.0 3.0 116 52-174 1-123 (204)
205 KOG1709 consensus 95.2 0.037 9.4E-07 33.7 4.8 115 25-154 88-204 (271)
206 KOG1975 consensus 95.2 0.015 3.8E-07 36.0 2.7 106 48-155 117-236 (389)
207 pfam05724 TPMT Thiopurine S-me 95.1 0.043 1.1E-06 33.3 4.8 104 47-157 21-144 (203)
208 pfam01269 Fibrillarin Fibrilla 94.6 0.053 1.3E-06 32.8 4.2 122 25-155 52-177 (229)
209 pfam03269 DUF268 Caenorhabditi 94.6 0.037 9.4E-07 33.7 3.4 110 49-180 2-130 (177)
210 TIGR01444 fkbM_fam methyltrans 94.5 0.013 3.2E-07 36.4 0.9 57 51-107 1-61 (142)
211 COG0338 Dam Site-specific DNA 94.5 0.031 7.9E-07 34.1 2.8 46 34-84 14-59 (274)
212 pfam12147 Hydrolase_5 Putative 94.5 0.16 4E-06 29.9 6.4 106 48-155 135-248 (311)
213 TIGR00438 rrmJ ribosomal RNA l 94.4 0.031 8E-07 34.1 2.6 109 34-154 16-148 (192)
214 COG3129 Predicted SAM-dependen 94.3 0.036 9.3E-07 33.7 2.9 113 16-131 43-166 (292)
215 pfam01795 Methyltransf_5 MraW 94.3 0.029 7.4E-07 34.3 2.3 89 29-125 7-100 (310)
216 pfam06962 rRNA_methylase Putat 94.1 0.031 7.9E-07 34.1 2.1 83 73-155 1-91 (140)
217 pfam00891 Methyltransf_2 O-met 94.0 0.031 7.8E-07 34.2 2.0 93 48-156 101-199 (239)
218 COG2384 Predicted SAM-dependen 94.0 0.049 1.3E-06 32.9 3.0 75 48-124 16-91 (226)
219 TIGR03587 Pse_Me-ase pseudamin 93.9 0.051 1.3E-06 32.9 2.9 106 31-156 29-143 (204)
220 PRK01544 bifunctional N5-gluta 93.8 0.12 3E-06 30.7 4.6 105 48-156 344-459 (503)
221 TIGR00571 dam DNA adenine meth 93.7 0.018 4.5E-07 35.6 0.3 60 99-158 202-276 (327)
222 KOG1201 consensus 93.7 0.029 7.4E-07 34.3 1.3 74 32-109 21-97 (300)
223 pfam10237 N6-adenineMlase Prob 93.5 0.042 1.1E-06 33.3 1.9 65 88-156 48-122 (161)
224 COG0863 DNA modification methy 93.5 0.12 3E-06 30.7 4.1 71 19-94 197-267 (302)
225 PRK00050 mraW S-adenosyl-methy 93.1 0.091 2.3E-06 31.4 3.1 93 25-125 6-101 (309)
226 KOG3178 consensus 93.0 0.3 7.6E-06 28.3 5.6 130 13-156 136-276 (342)
227 PTZ00146 fibrillarin; Provisio 93.0 0.14 3.5E-06 30.3 3.9 122 25-155 114-239 (296)
228 PRK10904 DNA adenine methylase 92.8 0.028 7.2E-07 34.4 0.2 47 34-86 16-62 (271)
229 COG5459 Predicted rRNA methyla 92.7 0.24 6.1E-06 28.8 4.8 120 33-158 96-228 (484)
230 KOG3201 consensus 92.6 0.069 1.8E-06 32.1 2.0 114 44-159 25-143 (201)
231 smart00138 MeTrc Methyltransfe 92.6 0.56 1.4E-05 26.7 6.5 118 48-173 99-258 (264)
232 KOG2352 consensus 92.4 0.21 5.3E-06 29.2 4.1 104 50-156 297-416 (482)
233 pfam02086 MethyltransfD12 D12 92.2 0.036 9.2E-07 33.7 0.0 48 37-86 10-57 (254)
234 pfam02086 MethyltransfD12 D12 92.0 0.16 4.1E-06 29.9 3.2 30 99-129 158-187 (254)
235 TIGR00571 dam DNA adenine meth 91.8 0.12 3.1E-06 30.6 2.4 61 32-92 11-79 (327)
236 TIGR00497 hsdM type I restrict 91.1 0.086 2.2E-06 31.5 1.0 106 23-131 201-320 (516)
237 pfam01234 NNMT_PNMT_TEMT NNMT/ 90.8 0.87 2.2E-05 25.5 5.9 56 35-93 46-101 (261)
238 pfam01739 CheR CheR methyltran 90.6 0.59 1.5E-05 26.5 5.0 126 48-176 30-192 (194)
239 pfam02951 GSH-S_N Prokaryotic 90.1 0.029 7.5E-07 34.3 -2.1 76 61-141 22-105 (119)
240 COG0863 DNA modification methy 89.4 0.16 4.1E-06 29.9 1.3 61 98-158 15-101 (302)
241 KOG1562 consensus 89.4 0.79 2E-05 25.8 4.8 128 26-155 98-235 (337)
242 PRK11760 putative RNA 2'-O-rib 89.3 0.29 7.4E-06 28.4 2.5 101 14-126 175-277 (356)
243 COG1889 NOP1 Fibrillarin-like 89.3 0.93 2.4E-05 25.4 5.1 121 25-154 55-178 (231)
244 KOG2360 consensus 89.0 0.3 7.5E-06 28.3 2.4 96 32-128 197-294 (413)
245 PRK13255 thiopurine S-methyltr 88.7 0.47 1.2E-05 27.1 3.2 74 48-123 37-121 (218)
246 PRK05866 short chain dehydroge 88.5 0.17 4.3E-06 29.8 0.8 63 43-108 34-99 (290)
247 KOG3987 consensus 88.3 0.62 1.6E-05 26.4 3.6 41 48-89 112-152 (288)
248 PRK05246 glutathione synthetas 88.1 0.043 1.1E-06 33.3 -2.4 66 61-132 23-95 (316)
249 PRK09880 L-idonate 5-dehydroge 88.0 0.83 2.1E-05 25.7 4.1 93 47-154 168-264 (343)
250 PRK10309 galactitol-1-phosphat 87.9 1.5 3.7E-05 24.2 5.3 96 47-154 159-258 (347)
251 pfam05711 TylF Macrocin-O-meth 87.8 1.5 3.9E-05 24.1 5.4 70 83-156 142-213 (249)
252 KOG1541 consensus 87.3 0.38 9.6E-06 27.7 2.0 56 26-89 35-90 (270)
253 PRK11064 wecC UDP-N-acetyl-D-m 87.2 0.79 2E-05 25.8 3.6 96 58-157 10-120 (415)
254 KOG2940 consensus 86.7 0.86 2.2E-05 25.6 3.6 119 29-154 52-172 (325)
255 PRK12458 glutathione synthetas 86.2 0.15 3.8E-06 30.0 -0.5 15 116-130 83-99 (349)
256 PRK08644 thiamine biosynthesis 85.6 0.26 6.6E-06 28.6 0.5 67 24-90 2-70 (209)
257 COG1063 Tdh Threonine dehydrog 85.5 1.6 4.1E-05 23.9 4.5 96 47-154 167-267 (350)
258 COG4889 Predicted helicase [Ge 85.3 0.61 1.5E-05 26.5 2.2 99 23-129 826-959 (1518)
259 PRK05396 tdh L-threonine 3-deh 85.3 3.1 7.9E-05 22.3 5.9 96 46-154 161-261 (341)
260 PRK13341 recombination factor 85.2 2.7 6.8E-05 22.6 5.5 116 28-155 477-602 (726)
261 PRK10083 putative dehydrogenas 85.2 1.5 3.7E-05 24.2 4.1 42 47-90 159-205 (339)
262 COG0500 SmtA SAM-dependent met 85.0 1.3 3.4E-05 24.4 3.9 102 52-157 52-156 (257)
263 KOG0024 consensus 83.8 2.8 7.2E-05 22.5 5.1 43 47-89 168-212 (354)
264 COG1352 CheR Methylase of chem 83.7 3.9 0.0001 21.6 6.1 107 48-160 96-245 (268)
265 pfam00107 ADH_zinc_N Zinc-bind 83.5 1.4 3.6E-05 24.3 3.5 87 58-155 1-89 (131)
266 COG0275 Predicted S-adenosylme 83.3 0.67 1.7E-05 26.2 1.7 94 24-125 5-103 (314)
267 PRK07097 gluconate 5-dehydroge 83.1 0.45 1.1E-05 27.3 0.8 62 45-109 6-70 (265)
268 PRK06194 hypothetical protein; 82.7 0.48 1.2E-05 27.1 0.8 61 46-109 3-66 (301)
269 TIGR03451 mycoS_dep_FDH mycoth 82.6 1.8 4.5E-05 23.7 3.7 94 48-154 176-274 (358)
270 PRK08217 fabG 3-ketoacyl-(acyl 82.4 0.5 1.3E-05 27.0 0.8 60 46-108 2-64 (253)
271 PRK08862 short chain dehydroge 82.1 0.53 1.4E-05 26.8 0.8 50 46-96 2-54 (227)
272 TIGR03366 HpnZ_proposed putati 82.0 1.8 4.7E-05 23.6 3.6 94 47-155 119-217 (280)
273 PRK10611 chemotaxis methyltran 81.9 4.6 0.00012 21.2 5.9 120 48-170 115-275 (287)
274 pfam03721 UDPG_MGDP_dh_N UDP-g 81.4 1.8 4.6E-05 23.6 3.4 98 57-157 6-120 (185)
275 pfam07091 FmrO Ribosomal RNA m 81.1 1.4 3.5E-05 24.4 2.7 85 27-124 88-174 (248)
276 KOG2356 consensus 80.8 0.75 1.9E-05 25.9 1.2 119 49-179 125-270 (366)
277 PRK05855 short chain dehydroge 80.3 0.64 1.6E-05 26.3 0.8 60 45-107 311-373 (582)
278 COG0293 FtsJ 23S rRNA methylas 80.3 0.69 1.8E-05 26.1 0.9 99 43-155 40-158 (205)
279 PRK06196 oxidoreductase; Provi 80.1 1.1 2.8E-05 24.9 1.9 61 20-92 7-71 (316)
280 PRK07666 fabG 3-ketoacyl-(acyl 80.1 0.64 1.6E-05 26.3 0.7 60 46-108 3-65 (238)
281 KOG3350 consensus 80.1 1.2 3.1E-05 24.7 2.1 14 117-130 134-147 (217)
282 PRK05854 short chain dehydroge 79.3 0.84 2.1E-05 25.6 1.1 81 46-128 11-108 (314)
283 KOG2098 consensus 79.3 0.6 1.5E-05 26.5 0.3 54 99-154 371-431 (591)
284 KOG1596 consensus 79.0 1.6 4.2E-05 23.9 2.5 122 25-155 135-260 (317)
285 PRK05876 short chain dehydroge 78.4 0.81 2.1E-05 25.7 0.8 78 46-126 3-91 (275)
286 PRK06522 2-dehydropantoate 2-r 78.4 2.1 5.3E-05 23.3 2.9 92 57-154 6-100 (307)
287 PRK06914 short chain dehydroge 78.1 0.78 2E-05 25.8 0.6 79 47-126 1-89 (280)
288 PRK08213 gluconate 5-dehydroge 78.1 0.84 2.1E-05 25.6 0.8 60 46-108 9-71 (259)
289 KOG3115 consensus 77.8 4.3 0.00011 21.4 4.4 103 49-154 61-181 (249)
290 PRK06720 hypothetical protein; 77.8 1 2.6E-05 25.1 1.2 62 44-108 11-75 (169)
291 PRK07814 short chain dehydroge 77.2 0.94 2.4E-05 25.3 0.8 62 45-109 6-70 (263)
292 PRK06139 short chain dehydroge 77.2 0.81 2.1E-05 25.7 0.5 60 46-108 3-65 (324)
293 pfam02254 TrkA_N TrkA-N domain 77.1 1.1 2.8E-05 24.9 1.1 87 56-155 3-94 (115)
294 PRK07677 short chain dehydroge 76.8 0.91 2.3E-05 25.4 0.7 75 47-125 1-87 (254)
295 PRK12826 3-ketoacyl-(acyl-carr 76.6 0.91 2.3E-05 25.4 0.6 60 46-109 3-66 (253)
296 PRK05786 fabG 3-ketoacyl-(acyl 76.3 1.1 2.7E-05 25.0 0.9 59 46-108 2-63 (238)
297 PRK05867 short chain dehydroge 76.2 1 2.6E-05 25.1 0.8 60 46-108 6-68 (253)
298 PRK06197 short chain dehydroge 75.9 1.3 3.3E-05 24.5 1.3 82 46-129 13-111 (306)
299 PRK06949 short chain dehydroge 75.6 1.1 2.7E-05 25.0 0.8 62 45-109 5-69 (258)
300 PRK08277 D-mannonate oxidoredu 75.5 1.1 2.9E-05 24.8 0.9 60 45-108 6-69 (278)
301 COG0677 WecC UDP-N-acetyl-D-ma 75.1 2.4 6.2E-05 22.9 2.5 97 58-157 16-129 (436)
302 PRK05653 fabG 3-ketoacyl-(acyl 75.0 1 2.7E-05 25.1 0.6 59 46-108 2-64 (246)
303 KOG0821 consensus 75.0 1.6 4.1E-05 23.9 1.6 76 23-110 35-110 (326)
304 TIGR03026 NDP-sugDHase nucleot 74.7 6.2 0.00016 20.5 4.5 96 58-156 7-120 (411)
305 PRK06500 short chain dehydroge 74.2 1.2 3.1E-05 24.7 0.7 45 46-91 3-50 (249)
306 PRK06227 consensus 73.7 1.3 3.3E-05 24.5 0.8 59 46-108 2-64 (256)
307 cd01493 APPBP1_RUB Ubiquitin a 73.5 2.1 5.2E-05 23.3 1.8 85 39-125 10-119 (425)
308 PRK09242 tropinone reductase; 73.5 1.3 3.2E-05 24.6 0.7 63 45-109 6-72 (258)
309 PRK07201 short chain dehydroge 72.9 1.2 3.2E-05 24.6 0.5 61 45-108 372-435 (663)
310 TIGR03438 probable methyltrans 72.5 7.2 0.00018 20.1 4.4 101 48-155 63-176 (301)
311 TIGR00692 tdh L-threonine 3-de 72.2 2.8 7E-05 22.6 2.2 110 34-154 143-259 (341)
312 PRK08945 short chain dehydroge 71.9 1.7 4.3E-05 23.9 1.0 51 44-95 8-61 (245)
313 PRK10161 transcriptional regul 71.8 4.2 0.00011 21.5 3.1 23 57-79 32-54 (229)
314 PRK06346 consensus 71.7 1.5 3.9E-05 24.1 0.8 60 46-109 2-65 (251)
315 PRK09072 short chain dehydroge 71.6 1.6 4.1E-05 23.9 0.9 46 46-92 2-50 (262)
316 PHA01634 hypothetical protein 71.5 2.9 7.3E-05 22.5 2.1 76 45-126 25-100 (156)
317 COG1179 Dinucleotide-utilizing 71.1 1.6 4E-05 24.0 0.7 49 45-93 26-76 (263)
318 PRK07062 short chain dehydroge 70.5 1.8 4.5E-05 23.7 0.9 62 45-108 4-69 (265)
319 PRK06172 short chain dehydroge 70.3 1.7 4.4E-05 23.8 0.8 61 45-108 3-66 (253)
320 PRK06138 short chain dehydroge 70.1 1.7 4.4E-05 23.8 0.8 60 46-109 2-64 (252)
321 PRK09496 trkA potassium transp 70.1 4.4 0.00011 21.4 2.8 106 6-124 184-303 (455)
322 TIGR02407 ectoine_ectB diamino 69.8 1.9 4.9E-05 23.5 0.9 18 45-62 30-47 (413)
323 KOG1269 consensus 69.4 6.8 0.00017 20.2 3.7 105 48-156 110-215 (364)
324 pfam02719 Polysacc_synt_2 Poly 69.4 1.3 3.4E-05 24.4 0.1 67 57-123 5-78 (280)
325 PRK07231 fabG 3-ketoacyl-(acyl 69.3 1.8 4.6E-05 23.6 0.7 58 46-108 3-63 (250)
326 PRK05875 short chain dehydroge 68.8 1.9 5E-05 23.5 0.8 63 45-108 3-69 (277)
327 PRK10610 chemotaxis regulatory 68.8 5.3 0.00014 20.9 3.0 81 73-155 7-87 (129)
328 PRK07890 short chain dehydroge 68.7 1.9 4.9E-05 23.5 0.8 60 46-108 2-64 (258)
329 PRK11107 hybrid sensory histid 68.3 1.9 4.7E-05 23.6 0.6 49 74-125 671-719 (920)
330 PRK08085 gluconate 5-dehydroge 68.1 2.1 5.4E-05 23.3 0.9 60 46-108 6-68 (254)
331 PRK06125 short chain dehydroge 68.0 2.4 6E-05 23.0 1.1 60 45-106 3-65 (259)
332 KOG0519 consensus 68.0 2.9 7.3E-05 22.5 1.5 54 69-125 665-718 (786)
333 PRK13394 3-hydroxybutyrate deh 68.0 2.1 5.4E-05 23.3 0.8 62 45-109 3-67 (262)
334 PRK07417 arogenate dehydrogena 68.0 5 0.00013 21.0 2.7 75 60-153 14-89 (280)
335 smart00829 PKS_ER Enoylreducta 67.8 7.1 0.00018 20.1 3.5 91 48-153 104-202 (288)
336 PRK07774 short chain dehydroge 67.4 2.1 5.5E-05 23.2 0.8 59 46-108 3-65 (250)
337 TIGR03206 benzo_BadH 2-hydroxy 67.4 1.9 4.8E-05 23.5 0.5 59 47-109 1-63 (250)
338 PRK06181 short chain dehydroge 67.2 1.8 4.6E-05 23.6 0.4 57 49-108 1-60 (263)
339 pfam05430 DUF752 Protein of un 67.2 3.1 8E-05 22.2 1.6 79 99-180 32-116 (124)
340 PRK07479 consensus 67.1 2.2 5.7E-05 23.1 0.8 60 46-109 2-65 (252)
341 PRK06113 7-alpha-hydroxysteroi 67.0 2.4 6E-05 22.9 0.9 61 44-108 6-70 (255)
342 PRK06198 short chain dehydroge 66.9 2.4 6.2E-05 22.9 1.0 60 46-108 3-66 (268)
343 KOG2918 consensus 66.8 12 0.00029 18.9 5.7 57 28-88 71-128 (335)
344 TIGR00006 TIGR00006 S-adenosyl 66.8 4.1 0.00011 21.5 2.1 76 48-125 27-109 (323)
345 COG1086 Predicted nucleoside-d 66.7 3.6 9.1E-05 21.9 1.8 82 46-128 247-335 (588)
346 TIGR01380 glut_syn glutathione 66.7 2.9 7.3E-05 22.5 1.3 88 61-156 22-124 (322)
347 PRK07576 short chain dehydroge 66.6 2.1 5.3E-05 23.3 0.6 75 46-124 5-91 (260)
348 PRK06124 gluconate 5-dehydroge 66.5 2.3 5.8E-05 23.1 0.8 61 45-109 10-74 (259)
349 KOG0022 consensus 66.4 2.3 5.7E-05 23.1 0.7 32 58-89 200-235 (375)
350 PRK07109 short chain dehydroge 66.2 2.1 5.3E-05 23.3 0.5 61 46-109 5-68 (338)
351 pfam04669 DUF579 Protein of un 66.1 8.4 0.00021 19.7 3.6 88 34-128 5-122 (187)
352 PRK07035 short chain dehydroge 65.6 2.7 6.9E-05 22.6 1.0 59 46-107 5-66 (252)
353 PRK07478 short chain dehydroge 64.8 2.5 6.4E-05 22.8 0.7 61 46-109 3-66 (254)
354 TIGR02070 mono_pep_trsgly mono 64.8 3.9 9.9E-05 21.7 1.7 37 30-69 129-170 (228)
355 PRK07776 consensus 64.5 2.7 7E-05 22.6 0.9 48 44-92 3-53 (252)
356 PRK09186 flagellin modificatio 63.6 2.7 6.8E-05 22.6 0.7 59 47-108 2-64 (255)
357 TIGR02875 spore_0_A sporulatio 63.6 5.4 0.00014 20.8 2.2 73 73-154 4-84 (270)
358 KOG0919 consensus 63.2 2.5 6.4E-05 22.8 0.5 75 49-128 3-79 (338)
359 PRK05565 fabG 3-ketoacyl-(acyl 63.0 3.1 7.9E-05 22.3 0.9 60 46-108 2-65 (247)
360 KOG3045 consensus 62.8 4.8 0.00012 21.1 1.9 113 48-187 180-302 (325)
361 PRK12939 short chain dehydroge 62.2 3.2 8.2E-05 22.1 0.9 62 45-109 3-67 (250)
362 PRK05650 short chain dehydroge 61.7 2.5 6.5E-05 22.8 0.3 73 51-126 2-85 (270)
363 PRK08339 short chain dehydroge 61.4 3.3 8.4E-05 22.1 0.8 60 45-107 4-67 (263)
364 PRK05872 short chain dehydroge 61.1 3.1 7.9E-05 22.3 0.6 46 45-91 5-53 (296)
365 TIGR00503 prfC peptide chain r 60.4 5.5 0.00014 20.8 1.8 91 3-105 316-429 (530)
366 PRK06200 2,3-dihydroxy-2,3-dih 60.3 3.4 8.8E-05 22.0 0.8 56 46-108 3-62 (263)
367 cd00755 YgdL_like Family of ac 59.7 3.3 8.5E-05 22.1 0.6 47 46-92 8-56 (231)
368 pfam02558 ApbA Ketopantoate re 59.4 6.4 0.00016 20.4 2.0 91 57-154 4-98 (150)
369 PRK08265 short chain dehydroge 58.8 4.2 0.00011 21.5 1.0 57 46-108 3-62 (261)
370 COG1064 AdhP Zn-dependent alco 58.5 8.4 0.00021 19.7 2.5 90 48-154 166-257 (339)
371 PRK12429 3-hydroxybutyrate deh 58.3 3.8 9.7E-05 21.7 0.7 58 47-108 2-63 (258)
372 PRK07831 short chain dehydroge 57.5 3.9 0.0001 21.6 0.7 62 46-108 13-78 (261)
373 PRK10754 quinone oxidoreductas 57.1 17 0.00044 17.8 4.3 93 48-154 140-237 (327)
374 PRK10766 DNA-binding transcrip 57.0 4.1 0.0001 21.6 0.7 23 73-95 4-26 (224)
375 PRK07832 short chain dehydroge 56.5 3.8 9.7E-05 21.7 0.4 74 51-126 2-86 (272)
376 PRK06114 short chain dehydroge 56.4 4.6 0.00012 21.3 0.8 61 45-108 12-76 (262)
377 cd02042 ParA ParA and ParB of 56.0 2.9 7.3E-05 22.5 -0.2 20 62-82 20-39 (104)
378 PRK10841 hybrid sensory kinase 56.0 4.3 0.00011 21.4 0.7 66 73-143 826-893 (947)
379 COG1062 AdhC Zn-dependent alco 55.9 4.5 0.00011 21.3 0.7 40 48-89 185-228 (366)
380 PRK07502 cyclohexadienyl dehyd 55.6 14 0.00036 18.3 3.2 76 60-153 19-97 (307)
381 pfam02636 DUF185 Uncharacteriz 55.4 5.1 0.00013 21.0 1.0 45 48-92 17-70 (240)
382 cd04708 BAH_plantDCM_II BAH, o 55.2 3.9 9.9E-05 21.7 0.3 13 50-62 45-57 (202)
383 pfam07942 N2227 N2227-like pro 54.9 13 0.00033 18.5 3.0 40 48-88 57-96 (268)
384 pfam07669 Eco57I Eco57I restri 54.8 3.6 9.3E-05 21.8 0.1 13 118-130 2-14 (106)
385 KOG0780 consensus 54.8 18 0.00045 17.8 3.6 85 69-154 128-220 (483)
386 PRK05708 2-dehydropantoate 2-r 54.0 12 0.00032 18.7 2.7 90 58-154 9-102 (305)
387 TIGR01425 SRP54_euk signal rec 53.3 16 0.00042 18.0 3.3 82 68-154 147-240 (453)
388 PRK13849 putative crown gall t 53.0 6.4 0.00016 20.4 1.1 64 62-127 22-92 (231)
389 PRK07326 short chain dehydroge 52.7 5.2 0.00013 20.9 0.6 57 47-108 3-62 (235)
390 KOG3924 consensus 52.4 5.1 0.00013 21.0 0.5 78 48-125 192-279 (419)
391 CHL00148 orf27 Ycf27; Reviewed 52.2 4.9 0.00013 21.1 0.5 24 57-80 36-59 (240)
392 PRK07063 short chain dehydroge 52.1 5.3 0.00014 20.9 0.6 59 46-108 4-67 (259)
393 pfam04672 DUF574 Protein of un 52.0 6.7 0.00017 20.3 1.1 106 50-159 71-194 (268)
394 PRK12746 short chain dehydroge 51.5 6.6 0.00017 20.3 1.0 61 46-108 3-66 (254)
395 PRK07825 short chain dehydroge 51.0 9.9 0.00025 19.3 1.8 46 46-92 2-50 (273)
396 PRK12399 tagatose 1,6-diphosph 50.9 9.9 0.00025 19.3 1.8 40 32-78 51-90 (324)
397 pfam03141 DUF248 Putative meth 50.2 9 0.00023 19.5 1.5 65 11-76 80-145 (506)
398 PRK12829 short chain dehydroge 49.8 6.3 0.00016 20.4 0.7 47 45-92 7-56 (264)
399 PRK13557 histidine kinase; Pro 49.7 6.6 0.00017 20.3 0.8 76 72-154 414-492 (538)
400 PRK13256 thiopurine S-methyltr 49.7 13 0.00034 18.5 2.4 89 26-123 28-129 (226)
401 PRK11091 aerobic respiration c 49.5 6.5 0.00017 20.3 0.7 51 73-126 527-577 (779)
402 pfam07015 VirC1 VirC1 protein. 49.3 8.1 0.00021 19.8 1.2 65 62-127 22-92 (231)
403 PRK12936 3-ketoacyl-(acyl-carr 49.3 7.2 0.00018 20.1 0.9 57 46-108 3-62 (245)
404 PRK08229 2-dehydropantoate 2-r 49.2 14 0.00036 18.4 2.4 92 58-154 9-105 (341)
405 PRK08251 short chain dehydroge 49.1 5.7 0.00015 20.7 0.4 77 49-126 2-89 (248)
406 pfam00899 ThiF ThiF family. Th 49.1 5.9 0.00015 20.6 0.5 39 50-90 2-44 (134)
407 PRK09422 alcohol dehydrogenase 49.0 24 0.0006 17.0 3.5 93 48-154 162-259 (338)
408 PRK13856 two-component respons 48.8 6.5 0.00017 20.3 0.6 43 31-81 13-55 (241)
409 COG2933 Predicted SAM-dependen 48.8 17 0.00044 17.8 2.8 100 15-126 177-278 (358)
410 PHA02518 ParA-like protein; Pr 48.8 8.9 0.00023 19.6 1.3 56 67-127 26-85 (211)
411 PRK08226 short chain dehydroge 48.8 6.8 0.00017 20.2 0.7 59 46-108 3-64 (263)
412 PRK12384 sorbitol-6-phosphate 48.6 6.3 0.00016 20.4 0.6 58 49-108 2-63 (259)
413 PRK07041 short chain dehydroge 48.0 8.3 0.00021 19.7 1.1 59 45-108 3-65 (240)
414 PRK12935 acetoacetyl-CoA reduc 47.9 7.9 0.0002 19.8 1.0 61 46-108 3-66 (247)
415 PRK09291 short chain dehydroge 47.7 6.9 0.00018 20.2 0.6 75 49-126 2-81 (257)
416 PRK08589 short chain dehydroge 47.5 7.1 0.00018 20.1 0.7 59 46-108 3-64 (272)
417 PRK05557 fabG 3-ketoacyl-(acyl 47.5 7.6 0.00019 19.9 0.8 60 46-108 2-65 (248)
418 PRK07067 sorbitol dehydrogenas 47.2 7.1 0.00018 20.1 0.6 44 46-91 2-49 (256)
419 PRK11173 two-component respons 46.9 16 0.0004 18.1 2.4 43 31-81 15-57 (237)
420 PRK04690 murD UDP-N-acetylmura 46.8 8.6 0.00022 19.6 1.0 14 73-86 165-178 (468)
421 PRK08063 enoyl-(acyl carrier p 46.7 8 0.0002 19.8 0.8 60 47-109 2-65 (250)
422 COG5379 BtaA S-adenosylmethion 46.3 16 0.0004 18.1 2.3 71 77-155 292-365 (414)
423 PRK12828 short chain dehydroge 46.0 9.2 0.00023 19.5 1.0 46 45-92 3-52 (239)
424 pfam05869 Dam DNA N-6-adenine- 45.9 15 0.00038 18.2 2.1 26 23-57 12-37 (179)
425 PRK12825 fabG 3-ketoacyl-(acyl 45.6 7.9 0.0002 19.9 0.7 77 46-125 4-92 (250)
426 PRK08936 glucose-1-dehydrogena 45.4 9.5 0.00024 19.4 1.0 62 45-108 3-67 (261)
427 PRK07792 fabG 3-ketoacyl-(acyl 45.3 8.6 0.00022 19.6 0.8 37 44-81 4-43 (303)
428 PRK08703 short chain dehydroge 45.3 9 0.00023 19.5 0.9 46 46-92 3-51 (239)
429 PRK10710 DNA-binding transcrip 45.1 11 0.00029 18.9 1.4 23 73-95 12-34 (240)
430 TIGR00709 dat 2,4-diaminobutyr 44.9 6.2 0.00016 20.5 0.0 87 42-141 31-124 (445)
431 pfam08973 DUF1893 Domain of un 44.6 6.1 0.00016 20.5 -0.1 87 11-107 18-105 (134)
432 TIGR01274 ACC_deam 1-aminocycl 44.5 28 0.00071 16.6 4.3 100 55-156 202-335 (352)
433 PRK05717 oxidoreductase; Valid 44.5 8.9 0.00023 19.5 0.8 55 46-107 7-65 (255)
434 TIGR03325 BphB_TodD cis-2,3-di 44.2 14 0.00036 18.4 1.8 43 46-89 2-47 (262)
435 PRK07060 short chain dehydroge 44.2 16 0.0004 18.1 2.0 47 45-92 5-54 (245)
436 PRK11083 DNA-binding response 44.2 9.5 0.00024 19.4 0.9 24 57-80 33-56 (229)
437 COG1893 ApbA Ketopantoate redu 44.0 28 0.0007 16.6 3.2 88 58-154 7-99 (307)
438 PRK07102 short chain dehydroge 44.0 8.2 0.00021 19.7 0.5 73 50-125 2-83 (243)
439 PRK10336 DNA-binding transcrip 43.7 7.9 0.0002 19.8 0.4 43 31-81 12-54 (219)
440 PRK08594 enoyl-(acyl carrier p 43.7 10 0.00027 19.1 1.0 61 46-108 3-68 (256)
441 PRK06841 short chain dehydroge 43.4 16 0.0004 18.1 1.9 59 44-108 10-71 (255)
442 pfam10354 DUF2431 Domain of un 43.3 9.5 0.00024 19.4 0.8 73 87-160 42-129 (166)
443 PRK08416 7-alpha-hydroxysteroi 43.2 10 0.00026 19.2 0.9 61 45-107 4-68 (260)
444 pfam06859 Bin3 Bicoid-interact 43.0 22 0.00055 17.2 2.6 22 133-156 23-44 (110)
445 PRK06947 glucose-1-dehydrogena 42.8 10 0.00027 19.1 0.9 61 46-108 3-66 (252)
446 TIGR00745 apbA_panE 2-dehydrop 42.6 17 0.00043 17.9 1.9 93 57-154 5-109 (332)
447 COG0396 sufC Cysteine desulfur 42.5 17 0.00042 17.9 1.9 129 15-159 63-205 (251)
448 cd00757 ThiF_MoeB_HesA_family 42.4 9.3 0.00024 19.4 0.6 46 45-90 17-64 (228)
449 PRK11517 transcriptional regul 42.2 11 0.00029 18.9 1.0 18 76-93 5-22 (223)
450 PRK08507 prephenate dehydrogen 41.8 20 0.00051 17.5 2.2 73 60-153 13-88 (275)
451 PRK12858 tagatose 1,6-diphosph 41.4 27 0.00069 16.7 2.8 12 4-15 2-13 (340)
452 TIGR03201 dearomat_had 6-hydro 41.3 9.8 0.00025 19.3 0.6 40 48-90 166-209 (349)
453 PRK08324 short chain dehydroge 40.9 12 0.00029 18.9 0.9 77 24-108 389-479 (676)
454 PRK06057 short chain dehydroge 40.8 18 0.00045 17.8 1.9 46 46-92 4-52 (255)
455 pfam06543 Lac_bphage_repr Lact 40.7 20 0.00052 17.4 2.1 20 22-41 26-45 (49)
456 PRK06077 fabG 3-ketoacyl-(acyl 40.7 11 0.00027 19.1 0.7 60 47-108 1-63 (249)
457 smart00448 REC cheY-homologous 40.7 9.5 0.00024 19.4 0.4 50 73-125 2-51 (55)
458 pfam00072 Response_reg Respons 40.3 9.4 0.00024 19.4 0.4 64 75-143 2-67 (111)
459 PRK12744 short chain dehydroge 39.8 13 0.00033 18.6 1.0 61 45-108 4-71 (257)
460 PRK10693 response regulator of 39.3 11 0.00028 19.0 0.6 57 11-81 5-61 (337)
461 pfam01210 NAD_Gly3P_dh_N NAD-d 39.1 19 0.00049 17.6 1.8 90 51-153 2-101 (159)
462 PRK04148 hypothetical protein; 38.9 34 0.00087 16.1 6.8 128 33-186 2-134 (135)
463 PRK06035 3-hydroxyacyl-CoA deh 38.7 34 0.00087 16.1 3.5 99 51-154 5-119 (291)
464 PRK09989 hypothetical protein; 38.2 35 0.00089 16.0 3.3 106 52-160 129-245 (258)
465 KOG2798 consensus 38.1 35 0.00089 16.0 3.3 35 46-81 148-182 (369)
466 PRK08628 short chain dehydroge 37.8 11 0.00029 18.9 0.5 60 45-108 3-65 (258)
467 PRK04161 tagatose 1,6-diphosph 37.6 22 0.00056 17.2 1.9 10 32-41 53-62 (326)
468 PRK07523 gluconate 5-dehydroge 37.1 14 0.00036 18.4 0.9 45 46-92 6-54 (251)
469 cd07211 Pat_PNPLA8 Patatin-lik 37.0 19 0.00048 17.6 1.5 55 11-71 5-60 (308)
470 PRK06249 2-dehydropantoate 2-r 37.0 19 0.00048 17.6 1.5 97 48-154 4-104 (313)
471 PRK12481 2-deoxy-D-gluconate 3 36.6 13 0.00034 18.5 0.7 58 45-108 4-65 (251)
472 PRK08340 glucose-1-dehydrogena 36.3 11 0.00027 19.1 0.1 47 58-108 8-58 (259)
473 PRK06940 short chain dehydroge 36.2 14 0.00037 18.3 0.8 57 46-107 2-61 (277)
474 PRK08223 hypothetical protein; 36.1 7.4 0.00019 20.0 -0.7 47 45-91 23-71 (287)
475 KOG1205 consensus 35.5 14 0.00035 18.4 0.6 64 45-109 8-74 (282)
476 pfam05148 Methyltransf_8 Hypot 35.5 14 0.00035 18.4 0.6 115 48-186 67-190 (214)
477 KOG4169 consensus 35.4 10 0.00026 19.2 -0.1 61 46-109 2-66 (261)
478 PRK11697 putative two-componen 35.2 19 0.00048 17.6 1.3 101 30-142 12-117 (239)
479 PRK05690 molybdopterin biosynt 35.2 12 0.0003 18.8 0.2 47 45-91 28-76 (245)
480 PRK10643 DNA-binding transcrip 35.0 22 0.00055 17.2 1.5 23 58-80 31-53 (222)
481 PRK09468 ompR osmolarity respo 34.4 11 0.00029 18.9 0.0 23 58-80 36-58 (239)
482 PRK06935 2-deoxy-D-gluconate 3 34.3 16 0.0004 18.1 0.7 60 45-108 11-73 (258)
483 PRK08643 acetoin reductase; Va 33.7 15 0.00038 18.2 0.5 55 50-108 3-61 (256)
484 COG4996 Predicted phosphatase 33.5 41 0.0011 15.6 4.1 84 68-155 35-123 (164)
485 PRK09836 DNA-binding transcrip 33.2 13 0.00032 18.6 0.1 22 58-79 31-52 (226)
486 TIGR01194 cyc_pep_trnsptr cycl 33.2 24 0.00061 17.0 1.5 78 77-158 435-531 (555)
487 PRK12921 2-dehydropantoate 2-r 32.9 39 0.00099 15.7 2.6 92 57-154 6-100 (306)
488 TIGR03439 methyl_EasF probable 32.8 43 0.0011 15.5 5.8 62 48-109 76-143 (319)
489 COG1553 DsrE Uncharacterized c 32.6 20 0.00052 17.4 1.1 21 118-138 2-22 (126)
490 COG1866 PckA Phosphoenolpyruva 32.3 29 0.00073 16.5 1.8 60 2-61 46-116 (529)
491 PRK08264 short chain dehydroge 32.0 16 0.00041 18.0 0.5 40 46-85 2-44 (235)
492 cd01078 NAD_bind_H4MPT_DH NADP 31.7 29 0.00073 16.5 1.7 89 29-127 13-106 (194)
493 PRK08293 3-hydroxybutyryl-CoA 31.7 16 0.00041 18.0 0.5 99 51-154 5-118 (288)
494 PRK07454 short chain dehydroge 31.6 16 0.00042 18.0 0.5 59 48-109 5-66 (241)
495 PRK09260 3-hydroxybutyryl-CoA 31.5 17 0.00043 17.9 0.5 36 58-94 9-48 (289)
496 PRK10955 DNA-binding transcrip 31.4 25 0.00065 16.8 1.4 51 71-125 1-51 (232)
497 pfam07757 AdoMet_MTase Predict 31.2 16 0.00042 18.0 0.4 11 52-62 62-72 (112)
498 PRK12823 benD 1,6-dihydroxycyc 31.1 23 0.00059 17.1 1.2 63 44-110 3-68 (260)
499 COG0473 LeuB Isocitrate/isopro 31.0 46 0.0012 15.3 3.0 88 62-151 164-260 (348)
500 cd01483 E1_enzyme_family Super 30.6 12 0.00032 18.7 -0.3 73 51-123 1-94 (143)
No 1
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=100.00 E-value=0 Score=393.51 Aligned_cols=180 Identities=27% Similarity=0.542 Sum_probs=169.2
Q ss_pred CCEEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 70199864108867443788886778589999999877633364558967861100122210011016873301110001
Q gi|254780405|r 2 NKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 2 ~~mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
++||||||+||||+|.+|++..||||+|||||||||||++ .++|++|||||||||++|||||||||++|+|||+|+
T Consensus 10 ~~mRIIsG~~kGr~L~~p~~~~~RPT~drvREalFn~L~~----~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~ 85 (198)
T PRK10909 10 GQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAP----VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR 85 (198)
T ss_pred CCEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCH
T ss_conf 7779972156897836899999687838899999987576----429987998277746889999987997899997899
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 23566764200133221002234456654210034444310151343100028889888744888897499998177888
Q gi|254780405|r 82 ESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 82 ~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 161 (189)
.+++.+++|++.++. +++++++.|+.+++... .++||+||+||||.++.+.++++.|..++||+++|+||+||+++..
T Consensus 86 ~~~~~i~~N~~~l~~-~~~~ii~~da~~~L~~~-~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 163 (198)
T PRK10909 86 AVSQQLIKNLATLKA-GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDALIYVESEVENG 163 (198)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 999999999998488-86799955699986255-9952189989997655599999999988891899699999548888
Q ss_pred C-CCCCCCEEEEEEECCCEEEEEEECC
Q ss_conf 6-7578857999834185699986507
Q gi|254780405|r 162 I-SVGAAFHFLQERKYGDTKIYFFSYN 187 (189)
Q Consensus 162 ~-~~~~~~~~~~~k~yG~t~i~f~~~n 187 (189)
+ +.+.+|+++++|+||+|.++||+.+
T Consensus 164 l~~~~~~~~l~kek~yG~t~~~lY~~~ 190 (198)
T PRK10909 164 LPTVPANWSLHREKVAGQVAYRLYQRE 190 (198)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 777898859999703086999999987
No 2
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=100.00 E-value=0 Score=380.44 Aligned_cols=179 Identities=39% Similarity=0.786 Sum_probs=160.7
Q ss_pred EEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 19986410886744378888677858999999987763336455896786110012221001101687330111000123
Q gi|254780405|r 4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSES 83 (189)
Q Consensus 4 mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a 83 (189)
||||||+||||+|.+|++..||||+||||||+||||+|.+ +++|++|||||||||+||+|||||||++|+|||+|+++
T Consensus 1 mRIisG~~kgr~l~~p~~~~~RPT~~rvrEalFniL~~~~--~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a 78 (181)
T pfam03602 1 MRIIGGKYKGRKLKVPPGPGTRPTTDRVREALFNILAPYF--ELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKA 78 (181)
T ss_pred CEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 9894524789882579999957684889999997501345--54898799827872698999997699889999699999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
Q ss_conf 566764200133221002234456654210-0344443101513431000288898887448888974999981778886
Q gi|254780405|r 84 IRLIRRNSELLGVEKNCNIFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCI 162 (189)
Q Consensus 84 ~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~ 162 (189)
++++++|++.++++++ .+...+...+... ....+||+||+||||..+.++.+++.|.+++||+++|++|+||+++..+
T Consensus 79 ~~~i~~N~~~l~~~~~-~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~~~~~~~l~~l~~~~~l~~~~iiiiE~~~~~~~ 157 (181)
T pfam03602 79 VATLKENLEALGLEGA-VLRMDAARALLRLAGKGPPFDLVFLDPPYAKGLIEEALELLAEKGWLNPNALIVVETESDEEL 157 (181)
T ss_pred HHHHHHHHHHHCCCCE-EEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf 9999999998589977-998108999987533578887663599754206999999999666657980999996687786
Q ss_pred -CCCCCCEEEEEEECCCEEEEEEE
Q ss_conf -75788579998341856999865
Q gi|254780405|r 163 -SVGAAFHFLQERKYGDTKIYFFS 185 (189)
Q Consensus 163 -~~~~~~~~~~~k~yG~t~i~f~~ 185 (189)
+.+.+|+++++|+||+|.++||+
T Consensus 158 ~~~~~~~~~~k~k~YG~t~i~f~k 181 (181)
T pfam03602 158 PEQPANLELVREKKYGQTKLAFYK 181 (181)
T ss_pred CCCCCCEEEEEEEECCCEEEEEEC
T ss_conf 668987089999944989999969
No 3
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=378.52 Aligned_cols=183 Identities=39% Similarity=0.773 Sum_probs=167.1
Q ss_pred CEEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 01998641088674437888867785899999998776333645589678611001222100110168733011100012
Q gi|254780405|r 3 KIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSE 82 (189)
Q Consensus 3 ~mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~ 82 (189)
+||||||+||||+|.+|++.+||||+||||||+||||++. .++|++|||||||||++|+|||||||++|+|||.|.+
T Consensus 1 ~mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~---~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~ 77 (187)
T COG0742 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPD---EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK 77 (187)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC---CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
T ss_conf 9399802406977257999986887168889999873434---4579889994687647689998578856999965989
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHCCHHHHHHHHH--HCCCCCCCEEEEEECCCC
Q ss_conf 35667642001332210022344566542100344-443101513431000288898887--448888974999981778
Q gi|254780405|r 83 SIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS-PFQLVYLDPPYGQGLAQQALAIID--KEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 83 a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~-~fDiIf~DPPY~~~~~~~~l~~l~--~~~~L~~~gliiiE~~~~ 159 (189)
+++++++|++.++++.+++++..|+..+++..... +||+||+||||+.+..+..+..+. +++||++++++++||++.
T Consensus 78 a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 78 AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 99999999998487612599840089998722778851289968997536066899998887658778896899982787
Q ss_pred CCC-CCCCCCEEEEEEECCCEEEEEEECCC
Q ss_conf 886-75788579998341856999865078
Q gi|254780405|r 160 TCI-SVGAAFHFLQERKYGDTKIYFFSYNP 188 (189)
Q Consensus 160 ~~~-~~~~~~~~~~~k~yG~t~i~f~~~np 188 (189)
..+ +.+.+|+++++|+||+|.++||++..
T Consensus 158 ~~~~~~~~~~~~~r~k~yG~t~l~~y~~~~ 187 (187)
T COG0742 158 VELPELPANFELHREKKYGQTKLTFYRREE 187 (187)
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEEECC
T ss_conf 775656787389987244977999999459
No 4
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=100.00 E-value=0 Score=357.99 Aligned_cols=182 Identities=31% Similarity=0.654 Sum_probs=161.8
Q ss_pred CCCEEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHH--HHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHH
Q ss_conf 9701998641088674437888867785899999998--77633364558967861100122210011016873301110
Q gi|254780405|r 1 MNKIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFD--ILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVD 78 (189)
Q Consensus 1 ~~~mrii~G~~kg~~l~~~~~~~~RPt~~~vrealFn--iL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE 78 (189)
+.++||++|.||||+|.+|++.+||||+||||||+|| ||.. +|.|++|||+|||||+||+|||||||++|+|||
T Consensus 10 ~~~~~i~~G~~~gr~L~~~~~~~tRPT~d~VREslFNiv~~~~----~i~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E 85 (210)
T TIGR00095 10 SGKLRIIGGKYRGRKLKAPNGSSTRPTTDRVRESLFNIVILRP----EIVGAHFLDLFAGSGSLGLEALSRGAKSAVFVE 85 (210)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----HHCCCEEEEEECCCHHHHHHHHHHCCCEEEEEE
T ss_conf 5111006542267514468989744564124567876999987----636872788540644653766401416237873
Q ss_pred HHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHH-HH-CCCC-CCCCCCCCHHHHHCC--HHHHHHHHHH-----CC
Q ss_conf 00123566764200133----2210022344566542-10-0344-443101513431000--2888988874-----48
Q gi|254780405|r 79 NNSESIRLIRRNSELLG----VEKNCNIFFRDVLRLG-KI-GNIS-PFQLVYLDPPYGQGL--AQQALAIIDK-----EG 144 (189)
Q Consensus 79 ~~~~a~~~lk~N~~~~~----~~~~~~ii~~D~~~~~-~~-~~~~-~fDiIf~DPPY~~~~--~~~~l~~l~~-----~~ 144 (189)
.|.++++++++|++.++ ++.+.+.+..++...+ .. .+.. .||+||+||||+.+. ...++++|.+ ++
T Consensus 86 ~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~d~iylDPPf~~~~ad~~~~l~l~~~alerl~~ 165 (210)
T TIGR00095 86 QDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSPFDIIYLDPPFNTGLADLEAILELLGEALERLNK 165 (210)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 68679999999999988871585300000002566657765179961147871488887610379999999999998731
Q ss_pred CCCCCEEEEEECCCC-CCC-CCCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 888974999981778-886-757885799983418569998650
Q gi|254780405|r 145 WLEPNALVIIEEYAG-TCI-SVGAAFHFLQERKYGDTKIYFFSY 186 (189)
Q Consensus 145 ~L~~~gliiiE~~~~-~~~-~~~~~~~~~~~k~yG~t~i~f~~~ 186 (189)
||+|+++|++|++.+ ..+ ..+++|+++++|+||+|.+.||..
T Consensus 166 ~L~~~~~i~ve~~~~~~~l~~~~~~~~~~~~K~~G~~~L~~~~r 209 (210)
T TIGR00095 166 WLNPKGLIVVEYDREMEELPTSPETLELLKQKKYGKSKLRLYQR 209 (210)
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHC
T ss_conf 04878579986341224211244334787503015524655540
No 5
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.81 E-value=2e-20 Score=142.09 Aligned_cols=107 Identities=24% Similarity=0.384 Sum_probs=89.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHC--CCCCCCCCC
Q ss_conf 589678611001222100110168733011100012356676420013322-10022344566542100--344443101
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCNIFFRDVLRLGKIG--NISPFQLVY 123 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ii~~D~~~~~~~~--~~~~fDiIf 123 (189)
..|++||||||.||++|+.|+..||++||.||.++.+++++++|+++++++ ++..++++|+++|++.. .+++||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 16876788646676999999866997148982657899999999986299710105672239999999985599556899
Q ss_pred CCHH-HHHC---------CHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 5134-3100---------028889888744888897499998
Q gi|254780405|r 124 LDPP-YGQG---------LAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 124 ~DPP-Y~~~---------~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+||| |..+ .+.+++... ..+|+|+|++++-
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~--~~lL~pgG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLA--LRLLAPGGTLVTS 335 (393)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 788100358210053898999999999--9970799689999
No 6
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.80 E-value=1.4e-19 Score=137.03 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred ECCEEEECCCCCC-CC-CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 0886744378888-67-7858999999987763336455896786110012221001101-6873301110001235667
Q gi|254780405|r 11 FQRRLLHTPQNRS-IR-PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLI 87 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~R-Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~l 87 (189)
|-|..+.+-++.- -| ||+..|-+++-+++... ...+|||+|||||++||..+. +...+|+++|+|+.|++++
T Consensus 87 F~gl~f~V~~~VLIPR~~teeLv~~~l~~~~~~~-----~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A 161 (284)
T TIGR03533 87 FAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPE-----PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVA 161 (284)
T ss_pred ECCCEEEECCCCEECCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 7384788689954389971999999999984236-----77715552168079999999878998799998999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC-----C-----HH------------HHHHHHHH--C
Q ss_conf 64200133221002234456654210034444310151343100-----0-----28------------88988874--4
Q gi|254780405|r 88 RRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG-----L-----AQ------------QALAIIDK--E 143 (189)
Q Consensus 88 k~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~-----~-----~~------------~~l~~l~~--~ 143 (189)
++|++.+++.++++++++|.+..+ ...+||+|..+|||=.. + ++ .....|.+ .
T Consensus 162 ~~N~~~~~l~~rv~~~~~D~~~~~---~~~~fDlIVSNPPYI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~ 238 (284)
T TIGR03533 162 EINIERHGLEDRVTLIQSDLFAAL---PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred HHHHHHHCCCCCEEEEECCHHHHC---CCCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999986085433688835143314---57777879977997884655449764115869987589558799999999889
Q ss_pred CCCCCCEEEEEECCCCCC
Q ss_conf 888897499998177888
Q gi|254780405|r 144 GWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 144 ~~L~~~gliiiE~~~~~~ 161 (189)
.+|+++|++++|+...+.
T Consensus 239 ~~L~pgG~l~lEiG~~Q~ 256 (284)
T TIGR03533 239 DHLNENGVLVVEVGNSME 256 (284)
T ss_pred HHCCCCCEEEEEECCCHH
T ss_conf 842569789999797889
No 7
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=3.4e-19 Score=134.76 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=115.2
Q ss_pred ECCEEEECCCCCC-CC-CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 0886744378888-67-7858999999987763336455896786110012221001101-6873301110001235667
Q gi|254780405|r 11 FQRRLLHTPQNRS-IR-PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLI 87 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~R-Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~l 87 (189)
|-|..+.+-++.- -| ||++.+-+++-.++... ...+|||||||||++||-.+. +...+|+++|+|+.|++++
T Consensus 99 F~gl~f~V~~~VLIPRpp~~ELi~~~l~~~~~~~-----~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA 173 (307)
T PRK11805 99 FCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDE-----QPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVA 173 (307)
T ss_pred ECCCEEEECCCEECCCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 7485688679801589984999999999973357-----88727774278279999999878998899985899999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC----------------------CHHHHHHHHHH--C
Q ss_conf 64200133221002234456654210034444310151343100----------------------02888988874--4
Q gi|254780405|r 88 RRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG----------------------LAQQALAIIDK--E 143 (189)
Q Consensus 88 k~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~----------------------~~~~~l~~l~~--~ 143 (189)
++|++.+++.++++++++|.+..+. ..+||+|..+|||-.. ..-.....|.. .
T Consensus 174 ~~N~~~~~l~~rv~~~~~D~~~~l~---~~~fDlIvSNPPYI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~ 250 (307)
T PRK11805 174 EINIERHGLEDRVTLIQSDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAA 250 (307)
T ss_pred HHHHHHHCCCCCEEEEECCHHHCCC---CCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999983887738998040221268---8750779967997885656339775315878887689248899999999889
Q ss_pred CCCCCCEEEEEECCCCCC------CCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 888897499998177888------675788579998341856999865
Q gi|254780405|r 144 GWLEPNALVIIEEYAGTC------ISVGAAFHFLQERKYGDTKIYFFS 185 (189)
Q Consensus 144 ~~L~~~gliiiE~~~~~~------~~~~~~~~~~~~k~yG~t~i~f~~ 185 (189)
.+|+++|++++|+..... ...+-.| -+-.-|...+.+++
T Consensus 251 ~~L~pgG~L~~EiG~~q~~l~~~~p~~p~~w---le~~~g~~gv~~i~ 295 (307)
T PRK11805 251 DYLTEDGVLVCEVGNSMVHLEAAYPDVPFTW---LEFENGGDGVFLLT 295 (307)
T ss_pred HHCCCCCEEEEEECCCHHHHHHHCCCCCCEE---EEECCCCCEEEEEE
T ss_conf 7447696899997978899998679999546---62068973799978
No 8
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.76 E-value=5.1e-19 Score=133.72 Aligned_cols=139 Identities=20% Similarity=0.299 Sum_probs=103.8
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 0886744378888-6778589999999877633364558967861100122210011016-8733011100012356676
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk 88 (189)
|.|..+.+.++.- -||-|+.+=|.+.+.+.. +..++||+|||||++||..+.. ...+|+++|+++.|+++++
T Consensus 55 F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~~------~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~ 128 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERLKK------GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR 128 (251)
T ss_pred EEEEEEEEECCEEEECCCHHHHHHHHHHHHCC------CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 98689997188786488339999999997314------898699955671699999999679978999989879999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC---------------------------CHHHHHHHHH
Q ss_conf 4200133221002234456654210034444310151343100---------------------------0288898887
Q gi|254780405|r 89 RNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG---------------------------LAQQALAIID 141 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~---------------------------~~~~~l~~l~ 141 (189)
+|++.++++ +++++++|.++.+. ..+||+|..+|||=.. .+..++...
T Consensus 129 ~N~~~~~~~-~v~~~~~d~~~~~~---~~~fDlIvsNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a- 203 (251)
T TIGR03534 129 KNAKRLGLE-NVRFLKSDWFEPLP---GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQA- 203 (251)
T ss_pred HHHHHCCCC-EEEEEECCHHHCCC---CCCCCEEEECCCCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHH-
T ss_conf 999980998-26865131432156---8986689978998874566632860102672999717984699999999999-
Q ss_pred HCCCCCCCEEEEEECCCCCC
Q ss_conf 44888897499998177888
Q gi|254780405|r 142 KEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 142 ~~~~L~~~gliiiE~~~~~~ 161 (189)
..+|+++|++++|+...+.
T Consensus 204 -~~~L~~~G~l~~Eig~~q~ 222 (251)
T TIGR03534 204 -PRYLKPGGWLLLEIGYDQG 222 (251)
T ss_pred -HHHCCCCCEEEEEECHHHH
T ss_conf -9853679889999683789
No 9
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=5.8e-18 Score=127.44 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=115.0
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 0886744378888-677858999999987763336455896786110012221001101-68733011100012356676
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk 88 (189)
|-|+.+.+-++.- -||-|+.+=|.+-+.+.. ...+|||+|+|||++||..+. +-..+|+++|++++|+++++
T Consensus 77 F~g~~f~V~~~VLIPRPETE~LVe~~l~~~~~------~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~ 150 (277)
T PRK09328 77 FWSLPLFVSPATLIPRPDTECLVEQALARLPE------QPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQ 150 (277)
T ss_pred EEEEEEEECCCEEEECCCHHHHHHHHHHHCCC------CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 65258987798364088179999999996453------788189954556999999998677989999648999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC----------HH------------HHHHHHHH--CC
Q ss_conf 42001332210022344566542100344443101513431000----------28------------88988874--48
Q gi|254780405|r 89 RNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL----------AQ------------QALAIIDK--EG 144 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~----------~~------------~~l~~l~~--~~ 144 (189)
+|+++++++ +++++++|.++.+ ...+||+|..+|||=... ++ .....|.+ ..
T Consensus 151 ~Na~~~~l~-~v~~~~~d~~~~~---~~~~fDlIVSNPPYI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~ 226 (277)
T PRK09328 151 RNAQHLAIK-NVRILQSDWFSAL---SGQQFAMIVSNPPYIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQ 226 (277)
T ss_pred HHHHHCCCC-EEEEEECCCHHHC---CCCCCCEEEECCCCCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999980988-6999944752113---787778899789987700034382421668389981797589999999999998
Q ss_pred CCCCCEEEEEECCCCCCCC-----CCCCCEEEEE-EE-CCCEEEEEEEC
Q ss_conf 8889749999817788867-----5788579998-34-18569998650
Q gi|254780405|r 145 WLEPNALVIIEEYAGTCIS-----VGAAFHFLQE-RK-YGDTKIYFFSY 186 (189)
Q Consensus 145 ~L~~~gliiiE~~~~~~~~-----~~~~~~~~~~-k~-yG~t~i~f~~~ 186 (189)
+|+++|++++|+...+... ...+|..++. |. .|.-++.+.+|
T Consensus 227 ~L~~~G~l~~Eig~~Q~~~v~~l~~~~gf~~i~~~kDl~g~~R~v~ar~ 275 (277)
T PRK09328 227 YLVPGGWLLLEHGWQQGEAVRQLFIRAGYSDVETCRDYGDNERVTLGRW 275 (277)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEE
T ss_conf 4466989999968158999999999679970478617899923999996
No 10
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=3.6e-17 Score=122.71 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=115.8
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 0886744378888-677858999999987763336455896786110012221001101-68733011100012356676
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk 88 (189)
|-|+.+.+-++.- -||-|+.+=|.+.+++... -+...+||+|+|||++||-.++ +.-.+|+++|+++.|+++++
T Consensus 75 F~g~~f~V~~~VLIPRpETE~LVe~~l~~~~~~----~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~ 150 (285)
T PRK09329 75 FLGLELQVDPRVLIPRQETEILVEKIIGYLQSH----KEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAK 150 (285)
T ss_pred ECCCEEEECCCCEECCCHHHHHHHHHHHHHHHC----CCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHH
T ss_conf 449578868984205960999999999998618----7777788845417999999998589865880337699999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-----CC------HH------------HHHHHHHH--C
Q ss_conf 420013322100223445665421003444431015134310-----00------28------------88988874--4
Q gi|254780405|r 89 RNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ-----GL------AQ------------QALAIIDK--E 143 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~-----~~------~~------------~~l~~l~~--~ 143 (189)
+|++.+++ +++++++|.++-. ..+||+|..+|||=. .+ ++ .....|.. .
T Consensus 151 ~Na~~~~~--~v~~~~~dl~~~~----~~~~DlIvSNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~ 224 (285)
T PRK09329 151 SNAKSNGL--DVDFLLGDLFAPF----SRPADAFVCNPPYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELP 224 (285)
T ss_pred HHHHHCCC--CEEEEECCHHHHH----CCCCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99997299--4799976300333----47678899899988844454498755436709988479738999999999999
Q ss_pred CCCCCCEEEEEECCCCCCCCC-----CCCCEEEEEEE-CCCEEEEEEECC
Q ss_conf 888897499998177888675-----78857999834-185699986507
Q gi|254780405|r 144 GWLEPNALVIIEEYAGTCISV-----GAAFHFLQERK-YGDTKIYFFSYN 187 (189)
Q Consensus 144 ~~L~~~gliiiE~~~~~~~~~-----~~~~~~~~~k~-yG~t~i~f~~~n 187 (189)
.+|+++|++++|+...+...+ ..+|...-.|. .|.-++.+.+.+
T Consensus 225 ~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~~~~v~kDl~G~~R~l~~~~~ 274 (285)
T PRK09329 225 KILVPGGVGWLEIGSSQGESVKKIFAKHGISGRVLQDLAGLDRFFFLENQ 274 (285)
T ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEC
T ss_conf 96004988999968548999999999669964281179999538999836
No 11
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.71 E-value=1.3e-17 Score=125.35 Aligned_cols=122 Identities=22% Similarity=0.316 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHH
Q ss_conf 867785899999998776333645589678611001222100110168733011100012356676420013322-1002
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCN 101 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ 101 (189)
+-|||-.+|+|- -.|++||.|||.||+.+.-|..-||++++.||++...++++++|+..+++. .+.+
T Consensus 539 DhR~~R~~i~~~------------a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~ 606 (716)
T PRK11783 539 DHRPTRRMIGQM------------AKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHR 606 (716)
T ss_pred CCHHHHHHHHHH------------HCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 437999999997------------07884643122256102133527961227862708799999999985499963473
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHH-HH-----------CCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 234456654210034444310151343-10-----------00288898887448888974999981778
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLVYLDPPY-GQ-----------GLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiIf~DPPY-~~-----------~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
++++|+++|++.. .++||+||+|||= .. -....++..+ ..+|+|+|.+|+.....
T Consensus 607 ~v~aD~~~wl~~~-~~~fDli~~DPPtFSnSk~m~~~~dvqrDh~~li~~~--~~~L~~~G~l~FS~N~r 673 (716)
T PRK11783 607 FIQADCLAWLKEA-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKLA--MRLLRPGGTLYFSNNKR 673 (716)
T ss_pred EEECCHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHCCCCCEEEEECCCC
T ss_conf 8964089999857-7766789988999987666788632203099999999--98608996899962887
No 12
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.69 E-value=4.6e-17 Score=122.09 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=115.4
Q ss_pred ECCEEEECCCCC-CCCCCHHHHHHHHHHHHHHCC----------------CCCCCCCEEEECCCCCCCCHHHHH-CCCCC
Q ss_conf 088674437888-867785899999998776333----------------645589678611001222100110-16873
Q gi|254780405|r 11 FQRRLLHTPQNR-SIRPSDSRTKKALFDILTHVY----------------PVFLDSTRMLNIFAGTGSVGFEAL-SRGCH 72 (189)
Q Consensus 11 ~kg~~l~~~~~~-~~RPt~~~vrealFniL~~~~----------------~~~~~~~~vlDlfaGsG~lgiEal-SrGA~ 72 (189)
|-|+.+.+-++. .-||-|+.+=|.+...+.... +..-+..++||||+|||+++|-.+ .+--.
T Consensus 81 F~g~~F~Vn~~VLIPRPeTE~LVE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~p~a 160 (503)
T PRK01544 81 FYSREFIVNKHVLIPRSDTEVLVDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCELPNA 160 (503)
T ss_pred ECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 25846784898335899639999999998642022234531001100001234557727884666799999999867899
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-----CCH------H-------
Q ss_conf 3011100012356676420013322100223445665421003444431015134310-----002------8-------
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ-----GLA------Q------- 134 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~-----~~~------~------- 134 (189)
+|+++|++.+|++++++|++..++.++++++++|.++-+ ...+||+|..+|||=. .+. +
T Consensus 161 ~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l---~~~kFDlIVSNPPYI~~~e~~~L~~eV~~yEP~lAL~g 237 (503)
T PRK01544 161 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---GKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFA 237 (503)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCC---CCCCCCEEEECCCCCCHHHHHHCCHHHHCCCCHHHHCC
T ss_conf 899998989999999999998088201799965531015---88872479838998875666652766531693788648
Q ss_pred -----HHHHHHHH--CCCCCCCEEEEEECCCCCCCC-----CCCCCEEEEE-EEC-CCEEEEEEE
Q ss_conf -----88988874--488889749999817788867-----5788579998-341-856999865
Q gi|254780405|r 135 -----QALAIIDK--EGWLEPNALVIIEEYAGTCIS-----VGAAFHFLQE-RKY-GDTKIYFFS 185 (189)
Q Consensus 135 -----~~l~~l~~--~~~L~~~gliiiE~~~~~~~~-----~~~~~~~~~~-k~y-G~t~i~f~~ 185 (189)
.....|.+ ...|+|+|.+++|+.-++... ...+|.+... |.+ |..++..++
T Consensus 238 geDGL~~Yr~Ia~~a~~~Lkp~G~l~lEIGy~Q~e~V~~IF~~~gy~~~~~~kdl~~~~rvi~~~ 302 (503)
T PRK01544 238 EEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQAEAVTQIFLDHGYNIDSIYKDLQSHNRVIEIS 302 (503)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 87628999999998898528898899997878689999999965943777766650576289962
No 13
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=99.69 E-value=2e-17 Score=124.25 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=87.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 589678611001222100110168733011100012356676420013322-10022344566542100-3444431015
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCNIFFRDVLRLGKIG-NISPFQLVYL 124 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ii~~D~~~~~~~~-~~~~fDiIf~ 124 (189)
.+|++|||+||.||++|+-|+.-||++|+.||.+..|++++++|++.++++ ++++++.+|++++++.. ...+||+|++
T Consensus 122 ~~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~Vil 201 (286)
T pfam10672 122 AKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVII 201 (286)
T ss_pred CCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEE
T ss_conf 28983253114786999998767987799991988999999999997699954369998309999999861799987998
Q ss_pred CHH-HHHC------CHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 134-3100------028889888744888897499998
Q gi|254780405|r 125 DPP-YGQG------LAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 125 DPP-Y~~~------~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
||| |.++ .|.++.... ..+++|+|+++.-
T Consensus 202 DPPsf~k~~~~~~~~Y~~l~~~a--~~ll~~gG~L~~~ 237 (286)
T pfam10672 202 DPPSFQKGSFALTKDYKKILRRL--PELLVEGGTVLAC 237 (286)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 79998887247887899999999--9860899689998
No 14
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.67 E-value=1.6e-16 Score=118.95 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=104.5
Q ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 108867443788886778589999999877633364558967861100122210011016-8733011100012356676
Q gi|254780405|r 10 KFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 10 ~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk 88 (189)
..|...|.-. ....|+.+|-+==+ .-.+. ....++||||||+|++||-+.+| .-.+++.||+++++++.++
T Consensus 14 ~~~~~~I~q~-~~~~~~~~DaiLL~------~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~ 85 (248)
T COG4123 14 TFKQFFIIQD-RCGFRYGTDAILLA------AFAPV-PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ 85 (248)
T ss_pred CCCCEEEEEC-CCCCCCCCHHHHHH------HHCCC-CCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHH
T ss_conf 4444699747-88616640899997------65265-6687698836894689999745587780799981799999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH-------------------HHHHHHHHHCCCCCCC
Q ss_conf 420013322100223445665421003444431015134310002-------------------8889888744888897
Q gi|254780405|r 89 RNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLA-------------------QQALAIIDKEGWLEPN 149 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~-------------------~~~l~~l~~~~~L~~~ 149 (189)
+|++...++++++++++|+.++.+.....+||+|+++|||-.... +..+.. ...+|+++
T Consensus 86 ~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~--a~~~lk~~ 163 (248)
T COG4123 86 RNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA--AAKLLKPG 163 (248)
T ss_pred HHHHHCCCHHHEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH--HHHHCCCC
T ss_conf 9886186134016764308876542365654789959898787533486746655663222889999999--99974679
Q ss_pred EEEEEECCCC
Q ss_conf 4999981778
Q gi|254780405|r 150 ALVIIEEYAG 159 (189)
Q Consensus 150 gliiiE~~~~ 159 (189)
|.+.+-|...
T Consensus 164 G~l~~V~r~e 173 (248)
T COG4123 164 GRLAFVHRPE 173 (248)
T ss_pred CEEEEEECHH
T ss_conf 7899995588
No 15
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.65 E-value=3e-16 Score=117.26 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999998776333645589678611001222100110168733011100012356676420013322100223445665
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
..-|.+++...... ....+.++||||||+|.+|+ +|++.+++|++||.++.|++.+++|++.+++. |++++.+|+.+
T Consensus 216 ~~~~~L~~~~~~~~-~~~~~~~vlDlycG~G~~sl-~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~-nv~f~~~d~~~ 292 (375)
T PRK03522 216 AVAAQLYATARDWV-RELPPKSMWDLFCGVGGFGL-HCATPDMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQ 292 (375)
T ss_pred HHHHHHHHHHHHHH-HCCCCCEEEEECCCCCHHHH-HHHHCCCEEEEEEECHHHHHHHHHHHHHCCCC-CEEEEECCHHH
T ss_conf 99999999999986-31589789996578538889-87641788999984599999999999986998-76999737788
Q ss_pred HHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCCEEEEE
Q ss_conf 4210034444310151343100028889888744888897499998177888---675788579998
Q gi|254780405|r 110 LGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC---ISVGAAFHFLQE 173 (189)
Q Consensus 110 ~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~---~~~~~~~~~~~~ 173 (189)
+... ...++|+|++||| ..+..+.+++.|.+ +++.-++|+-|...+. +....+|++.+.
T Consensus 293 ~~~~-~~~~~d~vvvDPP-R~Gl~~~~~~~l~~---~~p~~IvYVSCnP~TlaRDl~~L~gy~l~~v 354 (375)
T PRK03522 293 FATA-QGEVPELVLVNPP-RRGIGKPLCDYLSQ---MAPRFILYSSCNAQTMAKDLAHLPGYRIERV 354 (375)
T ss_pred HHHH-CCCCCCEEEECCC-CCCCHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHCCCEEEEE
T ss_conf 8763-4568978998999-77751999999986---5999699990798999999888439768899
No 16
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=99.62 E-value=4.5e-16 Score=116.20 Aligned_cols=123 Identities=25% Similarity=0.350 Sum_probs=104.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCC-CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 8867785899999998776333645589-678611001222100110168733011100012356676420013322100
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTHVYPVFLDS-TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~~~~~~~~~-~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
..+.+.-++++|++ ++.| -.|||+|||.|.++| -|.++|++|++||..+++++-+++|+++++.. |+
T Consensus 277 ~~~~~l~~~a~~~l----------~Lqg~e~V~DayCG~GtftL-pLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~-N~ 344 (434)
T TIGR00479 277 EQTEKLVDRALEAL----------ELQGEEKVVDAYCGVGTFTL-PLAKQAKSVVGVEVVPESVEDAKRNAELNGIA-NV 344 (434)
T ss_pred HHHHHHHHHHHHHH----------HCCCCCEEEEEECCCCCCHH-HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CH
T ss_conf 67799999999997----------15986557863157552004-44401218888714376789998888860353-20
Q ss_pred HHHHHHHHHHHHHCC--CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 223445665421003--444431015134310002888988874488889749999817788
Q gi|254780405|r 101 NIFFRDVLRLGKIGN--ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~--~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
+++.+++..++.... ...||.|.+||| ..+....+|..|.+ ++|.-++|+-|...+
T Consensus 345 ~F~~g~~E~~~p~~~~e~~~~D~~llDPP-R~GCa~~~L~~I~~---~kP~rivYVSCNP~T 402 (434)
T TIGR00479 345 EFLAGTLETVLPKQPWEGISPDVVLLDPP-RKGCAAEVLRTIIK---LKPKRIVYVSCNPAT 402 (434)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCC-CCCCHHHHHHHHHH---CCCEEEEEEECCCHH
T ss_conf 13331232110144222677898888888-98745899998862---077059998448534
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1e-15 Score=114.10 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=109.2
Q ss_pred EECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 10886744378888-677858999999987763336455896786110012221001101687-3301110001235667
Q gi|254780405|r 10 KFQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLI 87 (189)
Q Consensus 10 ~~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~l 87 (189)
.|-|..+.+.++.. =||-|...=|++-.-+.. ...++||+|||||++++-++.++. ..|+++|+|+.|++++
T Consensus 77 ~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~------~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A 150 (280)
T COG2890 77 EFGGLRFKVDEGVLIPRPDTELLVEAALALLLQ------LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA 150 (280)
T ss_pred EEECCEEEECCCCCCCCCCHHHHHHHHHHHHHC------CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 561634534798668897679999999975111------58918996588319999999618988799998999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC----------H------------HHHHHHHHH--C
Q ss_conf 642001332210022344566542100344443101513431000----------2------------888988874--4
Q gi|254780405|r 88 RRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL----------A------------QQALAIIDK--E 143 (189)
Q Consensus 88 k~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~----------~------------~~~l~~l~~--~ 143 (189)
++|++.+++ .++.++.+|.+.-+ . .+||+|..+|||=... + -++...+.. .
T Consensus 151 ~~Na~~~~l-~~~~~~~~dlf~~~---~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 151 RENAERNGL-VRVLVVQSDLFEPL---R-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHHHHHCC-CCEEEEECCHHHCC---C-CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999998289-74798740033346---8-885779968998888521137421358979987248777899999999899
Q ss_pred CCCCCCEEEEEECCCCCCCCC-----CCC-CEEE-EEEEC-CCEEEEEEE
Q ss_conf 888897499998177888675-----788-5799-98341-856999865
Q gi|254780405|r 144 GWLEPNALVIIEEYAGTCISV-----GAA-FHFL-QERKY-GDTKIYFFS 185 (189)
Q Consensus 144 ~~L~~~gliiiE~~~~~~~~~-----~~~-~~~~-~~k~y-G~t~i~f~~ 185 (189)
.+|+++|++++|+...+.... ..+ +..+ ..|.| |.-.+....
T Consensus 226 ~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 226 DILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 87286828999976984899999999749844766551456763588876
No 18
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.1e-16 Score=114.42 Aligned_cols=140 Identities=17% Similarity=0.303 Sum_probs=104.3
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67443788886778589999999877633364558967861100122210011016873301110001235667642001
Q gi|254780405|r 14 RLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 14 ~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
.....+.+.-+-|.+. +-|.+..+...... ...+.+++|||||.|.+|+ +|++.+++|+.||.++.|++.+++|++.
T Consensus 261 ~~~~~~~~sF~Q~N~~-~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l-~lA~~~~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 261 VSFQISPRSFFQVNPA-VAEKLYETALEWLE-LAGGERVLDLYCGVGTFGL-PLAKRVKKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred EEEEECCCCCEEECHH-HHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHH-HHCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 3887579974133999-99999999999974-3699779993558870135-5312465799996489999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 332210022344566542100-34444310151343100028889888744888897499998177888
Q gi|254780405|r 94 LGVEKNCNIFFRDVLRLGKIG-NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 94 ~~~~~~~~ii~~D~~~~~~~~-~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 161 (189)
++..+ +++..+|+.++.... ....+|.|++||| ..+...+.++.|.+ +++..++|+-|...+.
T Consensus 338 n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-R~G~~~~~lk~l~~---~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 338 NGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP-RAGADREVLKQLAK---LKPKRIVYVSCNPATL 401 (432)
T ss_pred CCCCC-EEEEECCHHHHHHHHCCCCCCCEEEECCC-CCCCCHHHHHHHHH---CCCCCEEEEECCHHHH
T ss_conf 39887-79995868888651002579998998999-99999899999985---5898689997687888
No 19
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.61 E-value=5.5e-16 Score=115.73 Aligned_cols=140 Identities=17% Similarity=0.290 Sum_probs=101.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88867785899999998776333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
|.++-|||..+-+.+-..+ ..|.+|||++||||.|+|.|...||++|+++|+|+.|++.+++|++.+++.+.+
T Consensus 142 GTG~H~TT~lcl~~l~~~~-------~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~ 214 (298)
T PRK00517 142 GTGTHPTTRLCLEWLEKLV-------LPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRL 214 (298)
T ss_pred CCCCCHHHHHHHHHHHHHC-------CCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCE
T ss_conf 6777747999999998435-------468868871577069999999749984999989899999999999986998426
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEE----CCCCCCCC--CCCCCEEEE
Q ss_conf 223445665421003444431015134310002888988874--4888897499998----17788867--578857999
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIE----EYAGTCIS--VGAAFHFLQ 172 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE----~~~~~~~~--~~~~~~~~~ 172 (189)
++..++.. ....+||+|+++ .....+..+.. .+.++|+|.+++. +....-.. ...+|++.+
T Consensus 215 ~~~~~~~~-----~~~~~~DlvvAN------Ila~vl~~l~~~~~~~l~~~G~lilSGIl~~~~~~v~~~~~~~g~~~~~ 283 (298)
T PRK00517 215 ELYLPEDQ-----PLEGKADVIVAN------ILANPLIELAPDLAALVKPGGRLILSGILAEQADEVLEAYEDAGFTLDE 283 (298)
T ss_pred EEECCCCC-----CCCCCCCEEEEE------CCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 89616643-----446764689973------1589999999999997389979999278488999999999987998978
Q ss_pred EEECCC
Q ss_conf 834185
Q gi|254780405|r 173 ERKYGD 178 (189)
Q Consensus 173 ~k~yG~ 178 (189)
...-|.
T Consensus 284 ~~~~~~ 289 (298)
T PRK00517 284 VAEREE 289 (298)
T ss_pred EEEECC
T ss_conf 860398
No 20
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.61 E-value=6e-16 Score=115.47 Aligned_cols=105 Identities=22% Similarity=0.401 Sum_probs=84.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC------------
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003------------
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN------------ 115 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~------------ 115 (189)
.+..+||||||+|.+|+ +|++.|++|++||.++.|++.+++|++.++++ |++++++|+.++.....
T Consensus 207 ~~~~vlDLYcG~Gtfsl-~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~-N~~fi~~~a~~~~~~~~~~~~~~~l~~~~ 284 (363)
T PRK05031 207 SKGDLLELYCGNGNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 284 (363)
T ss_pred CCCCEEEEECCCCHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCHHHCCCCCC
T ss_conf 89828986058664269-98862687999953899999999999986998-64999658999999873431010012466
Q ss_pred --CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf --444431015134310002888988874488889749999817788
Q gi|254780405|r 116 --ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 116 --~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
...||+|++||| ..+..+++++.+.+ + .-++|+-|...+
T Consensus 285 ~~~~~~d~vvvDPP-R~Gl~~~~~~~i~~---~--~rIVYVSCnP~T 325 (363)
T PRK05031 285 LKSYNFSTIFVDPP-RAGLDEETLKLVQN---Y--ERILYISCNPET 325 (363)
T ss_pred CCCCCCCEEEECCC-CCCCCHHHHHHHHC---C--CEEEEEECCHHH
T ss_conf 44355864898999-88874999999836---8--909999289899
No 21
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=99.60 E-value=8.1e-16 Score=114.70 Aligned_cols=139 Identities=19% Similarity=0.297 Sum_probs=98.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88867785899999998776333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
|.++-|||..+-+.+-..+ ..|++|||++||||.++|-|+..||++|+++|+|+.|++.+++|++.+++.+++
T Consensus 140 GTG~H~TT~lcl~~l~~~~-------~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~ 212 (294)
T pfam06325 140 GTGTHPTTALCLEALESLV-------KPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQL 212 (294)
T ss_pred CCCCCHHHHHHHHHHHHHC-------CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCE
T ss_conf 6777757999999998650-------369867850565089999999759996899988899999999999976998317
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEE----CCCCCCC-CCCCCCEEEEE
Q ss_conf 223445665421003444431015134310002888988874--4888897499998----1778886-75788579998
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIE----EYAGTCI-SVGAAFHFLQE 173 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE----~~~~~~~-~~~~~~~~~~~ 173 (189)
++.... .....+||+|+++ .....|..+.. ...|+|+|.+++- +....-. ....+|++.+.
T Consensus 213 ~~~~~~------~~~~~~~DlIvAN------Ila~~L~~l~~~~~~~l~~~G~lilSGil~~q~~~v~~a~~~g~~~~~~ 280 (294)
T pfam06325 213 EVYLPG------DLPEGKADVVVAN------ILADPLIELAPDIYALVKPGGYLILSGILEEQADDVAEAYSQGFELITV 280 (294)
T ss_pred EEECCC------CCCCCCCCEEEEH------HCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 996443------1556645789841------0899999999999997389989999178289999999999869977437
Q ss_pred EECCC
Q ss_conf 34185
Q gi|254780405|r 174 RKYGD 178 (189)
Q Consensus 174 k~yG~ 178 (189)
+.-|.
T Consensus 281 ~~~~~ 285 (294)
T pfam06325 281 EEREE 285 (294)
T ss_pred EEECC
T ss_conf 74698
No 22
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.60 E-value=8.8e-16 Score=114.51 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=104.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCC--CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 888867785899999998776333645589--678611001222100110168733011100012356676420013322
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDS--TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE 97 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~--~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~ 97 (189)
.|.+|-|||+..=|++=. .+..+ +.++|++||||.|||.|+..||++|+++|.||.|++..+.|++++++.
T Consensus 173 FGTGtH~TT~LCLe~L~~-------~d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~ 245 (330)
T TIGR00406 173 FGTGTHPTTSLCLELLED-------LDLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS 245 (330)
T ss_pred CCCCCCHHHHHHHHHHHC-------CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 688974578999998740-------1477766547871267178999999751231122137728999999768745886
Q ss_pred CCHHHHHHH-HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEE----ECCCCCCCC--CCCCC
Q ss_conf 100223445-665421003444431015134310002888988874--488889749999----817788867--57885
Q gi|254780405|r 98 KNCNIFFRD-VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVII----EEYAGTCIS--VGAAF 168 (189)
Q Consensus 98 ~~~~ii~~D-~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliii----E~~~~~~~~--~~~~~ 168 (189)
+..+++... +.+..+ ....++|+|.+ |...+.+..|.. ..+++++|.+++ ++.+..-.+ ...+|
T Consensus 246 ~~~~~~~~~~vPe~~~-~~e~~~DViVA------NiLA~vi~~L~p~~~~L~~~~G~lilSGIl~~~~~sV~~ay~q~GF 318 (330)
T TIGR00406 246 DRLQVKLENSVPELEQ-PIEGKADVIVA------NILAEVIKELYPQFSRLVKPGGHLILSGILETQAQSVCEAYEQAGF 318 (330)
T ss_pred HHHHHHHCCCCCCCCC-CCCCCCCEEEE------CCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 4576432057875345-32256675788------0024578764135513106899657413476479999999855794
Q ss_pred EEEE
Q ss_conf 7999
Q gi|254780405|r 169 HFLQ 172 (189)
Q Consensus 169 ~~~~ 172 (189)
.+..
T Consensus 319 ~~~~ 322 (330)
T TIGR00406 319 TVVE 322 (330)
T ss_pred EEHH
T ss_conf 6343
No 23
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.60 E-value=4.4e-16 Score=116.28 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=85.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 896786110012221001101687-3301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.+.++||++||||.+|+.++.++. .+|+++|.|+.|++.+++|++.++++ +++++++|+.+.+ ...+||+|+++|
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~-~v~v~~~D~~~~~---~~~~fD~IvsNP 106 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLE-NGEVFWSDLYSAV---EPGKFDLIISNP 106 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCC---CCCCEEEEEECC
T ss_conf 899499977648298999999789867985154499999999999980998-4899974466657---788660899897
Q ss_pred HHHHCC---HHHHHHHHHH-CCCCCCCEEEEEECCCCCC
Q ss_conf 431000---2888988874-4888897499998177888
Q gi|254780405|r 127 PYGQGL---AQQALAIIDK-EGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 127 PY~~~~---~~~~l~~l~~-~~~L~~~gliiiE~~~~~~ 161 (189)
||..+. ++-....+.. .+.|+|+|.+.+-..+...
T Consensus 107 P~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~ 145 (170)
T pfam05175 107 PFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANRHLG 145 (170)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 721142032899999999999961649799999989999
No 24
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.59 E-value=1.2e-15 Score=113.68 Aligned_cols=105 Identities=17% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-------------
Q ss_conf 8967861100122210011016873301110001235667642001332210022344566542100-------------
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG------------- 114 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~------------- 114 (189)
.+..++|||||+|.+|+ +|++.|++|++||.++.|++.+++|++.++++ |++++++|+.++....
T Consensus 197 ~~~~vlDlYcG~Gtfsl-~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~-Nv~f~~~~~~~~~~~~~~~~~~~~~~~i~ 274 (353)
T pfam05958 197 SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCCCEEEEECCCCHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 89958998468888889-99864787999962599999999989986998-64999728999999875242233203666
Q ss_pred -CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf -3444431015134310002888988874488889749999817788
Q gi|254780405|r 115 -NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 115 -~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
....||+|++||| ..+..+++++.+.+. .-++|+-|...+
T Consensus 275 ~~~~~~d~vvlDPP-R~G~~~~~~~~i~~~-----~rIvYVSCnP~T 315 (353)
T pfam05958 275 LKSYNCSTIFVDPP-RAGLDPDTCKLVQAY-----ERILYISCNPET 315 (353)
T ss_pred CCCCCCCCEEECCC-CCCCHHHHHHHHHCC-----CCEEEEECCHHH
T ss_conf 32246772584898-777739999998469-----968999489999
No 25
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.2e-16 Score=115.86 Aligned_cols=98 Identities=26% Similarity=0.373 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 67785899999998776333645589678611001222100110168733011100012356676420013322100223
Q gi|254780405|r 24 IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 24 ~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
.|--.+.+++-+.-.. ...+++|+.|+||+||||.+||.|+..||+.|++||.|+++++++++|++. +..+++++
T Consensus 24 Y~Tp~~~Aa~il~~a~---~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~ 98 (198)
T COG2263 24 YRTPAPLAAYILWVAY---LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFV 98 (198)
T ss_pred CCCCHHHHHHHHHHHH---HCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--HCCCEEEE
T ss_conf 4798489999999998---738847888888278847889999862971799993698999999988886--08846999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHC
Q ss_conf 4456654210034444310151343100
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~ 131 (189)
++|+.++. .++|.+++||||+..
T Consensus 99 ~~dv~~~~-----~~~dtvimNPPFG~~ 121 (198)
T COG2263 99 VADVSDFR-----GKFDTVIMNPPFGSQ 121 (198)
T ss_pred ECCHHHCC-----CCCCEEEECCCCCCC
T ss_conf 82101147-----766669978997322
No 26
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=99.59 E-value=2.8e-16 Score=117.49 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=70.3
Q ss_pred CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC--CCCCCCCCCCCHH
Q ss_conf 67861100122210011016873301110001235667642001332210022344566542100--3444431015134
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG--NISPFQLVYLDPP 127 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~--~~~~fDiIf~DPP 127 (189)
+.+||+|||+|..+|.+..+| .+|++||+|+.+++.+++|++..+++++++++++|++++++.. ...+||+||+|||
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~-~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~sPP 80 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVF-CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLSPP 80 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 799993778079999999758-9899997989999999998998398731799977599997887635887558997799
Q ss_pred HH
Q ss_conf 31
Q gi|254780405|r 128 YG 129 (189)
Q Consensus 128 Y~ 129 (189)
|+
T Consensus 81 WG 82 (165)
T pfam09445 81 WG 82 (165)
T ss_pred CC
T ss_conf 99
No 27
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=99.59 E-value=1.4e-15 Score=113.34 Aligned_cols=120 Identities=23% Similarity=0.362 Sum_probs=93.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCC
Q ss_conf 896786110012221001101687330111000123566764200133221002234456654210--034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI--GNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~D 125 (189)
.+.+|||||||+|.+|+ .|++.|++|+.||.++.|++.+++|++.++++ |++++++|+.+.+.. ....+||+|.+|
T Consensus 294 ~~~~VlDLYcGvGtfsl-~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~-n~~f~~~d~~~~l~~~~~~~~~~D~vi~D 371 (440)
T PRK13168 294 PGDRVLDLFCGLGNFTL-PLARQAAEVVGVEGVPAMVERARENARRNGLD-NVTFYHANLFEDFTDQPWAKGGFDKVLLD 371 (440)
T ss_pred CCCEEEEEECCCCCCCH-HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 89889986238562111-13530676887605799999999999974999-87899746456635578637999989999
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-----CCCCCCEEEEEE
Q ss_conf 3431000288898887448888974999981778886-----757885799983
Q gi|254780405|r 126 PPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCI-----SVGAAFHFLQER 174 (189)
Q Consensus 126 PPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~-----~~~~~~~~~~~k 174 (189)
|| ..+. .+.++.|.+ +++..++|+-|...+.. -...+|++.+.+
T Consensus 372 PP-R~G~-~~~i~~l~~---~~p~~IvYVSCnPaTlARDl~~L~~~GY~l~~i~ 420 (440)
T PRK13168 372 PP-RAGA-FEVMQALAK---LKPKRIVYVSCNPATLARDAGVLVEAGYRLKRAG 420 (440)
T ss_pred CC-CCCH-HHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 88-5278-999999984---7989799993898999999999987894895999
No 28
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.3e-15 Score=109.85 Aligned_cols=139 Identities=20% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88867785899999998776333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
|.++-|||...-|++=..+ ..+.++||++||||.++|-|+..||++|+++|+|+.|++.+++|++++++....
T Consensus 142 GTG~HpTT~lcL~~Le~~~-------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~ 214 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL-------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV 214 (300)
T ss_pred CCCCCHHHHHHHHHHHHHH-------CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 7887801799999999860-------589879982678159999999819866899718889999999999976996022
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEE----CCCCCCCC--CCCCCEEEE
Q ss_conf 223445665421003444431015134310002888988874--4888897499998----17788867--578857999
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIE----EYAGTCIS--VGAAFHFLQ 172 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE----~~~~~~~~--~~~~~~~~~ 172 (189)
+.-..+. .......+||+|.++ .....+..+.. ...++|+|.+|+- .....-.+ ...+|++.+
T Consensus 215 ~~~~~~~---~~~~~~~~~DvIVAN------ILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 215 QAKGFLL---LEVPENGPFDVIVAN------ILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred HCCCCCC---HHHCCCCCCCEEEEH------HHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEE
T ss_conf 0034563---000136865689860------5278999999999987088936999862075899999999858976868
Q ss_pred EEE
Q ss_conf 834
Q gi|254780405|r 173 ERK 175 (189)
Q Consensus 173 ~k~ 175 (189)
...
T Consensus 286 ~~~ 288 (300)
T COG2264 286 VLE 288 (300)
T ss_pred EEE
T ss_conf 970
No 29
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=99.55 E-value=1.8e-15 Score=112.59 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 7785899999998776333645589678611001222100110168-733011100012356676420013322100223
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
|-.++|. .+-+.+. +|-.|||+|||.|.++|.++..| +++|+++|+||.|++.+++|++.++++++++++
T Consensus 86 rl~~Er~--ri~~~~~-------~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~ 156 (199)
T pfam02475 86 RLIGERE--RIAKLVK-------EGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPI 156 (199)
T ss_pred CCHHHHH--HHHHHCC-------CCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 7658899--9997448-------998899816886577899864078648999828999999999999980999836999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHH-CCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 445665421003444431015134310-00288898887448888974999
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQ-GLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~-~~~~~~l~~l~~~~~L~~~glii 153 (189)
++|+.++.. ..+||.|+||||... ...+..+. .++++|+|.
T Consensus 157 ~gD~~~~~~---~~~~DrvimnlP~~a~~fL~~A~~------~lk~gg~iH 198 (199)
T pfam02475 157 LGDVRDVIL---EGVADRVIMNLPKSAHEFLDKALR------AVKDGGVIH 198 (199)
T ss_pred ECCHHHHCC---CCCCCEEEECCCCCHHHHHHHHHH------HHCCCCEEE
T ss_conf 287878604---674009994897316999999999------855898983
No 30
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.52 E-value=1.9e-14 Score=106.52 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 89678611001222100110168733-01110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHY-VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~-v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.+..|||.|||||++.|||...|+.. ++.+|+|+++++.+++|++..++++.+++.++|+.++. ....+||+|+.||
T Consensus 28 ~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~--~~~~~~d~Iv~nP 105 (171)
T pfam01170 28 PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLP--LLNGSVDTIVTDP 105 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--CCCCCCEEEEECC
T ss_conf 99978868998789999999961358953675879999999999998289984699976665387--9878831899889
Q ss_pred HHHHC---------CHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 43100---------02888988874488889749999
Q gi|254780405|r 127 PYGQG---------LAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 127 PY~~~---------~~~~~l~~l~~~~~L~~~gliii 154 (189)
||+.. +|..+++.+.+ .++.....++
T Consensus 106 PYG~r~~~~~~~~~ly~~~~~~~~~--~~~g~~~~i~ 140 (171)
T pfam01170 106 PYGIRIGSKGALEKLYPAFLDEAKR--VLRGRLVFAT 140 (171)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCEEEEE
T ss_conf 8201136545699999999999998--6899789999
No 31
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.48 E-value=1.1e-13 Score=102.10 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 78589999999877633364558967861100122210011016--8733011100012356676420013322100223
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
.|+.=||-...+-|+- -.+.+++|++||||++++||.-+ -..+|++||+++++++.+++|++++++.++++++
T Consensus 23 mTK~EVRa~~l~~L~l-----~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i 97 (198)
T PRK00377 23 MTKEEIRALALSKLRL-----FKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLI 97 (198)
T ss_pred CCHHHHHHHHHHHHCC-----CCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 6679999999997099-----99899999177032999999996697875999967888999999999980999885999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 4456654210034444310151343100028889888744888897499998
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
++|+.+.+.... ..+|.||++= +.+...++++.+.+ .|+++|.|++-
T Consensus 98 ~G~ap~~l~~l~-p~pD~vFIGG--~~g~l~~il~~~~~--~L~~gGriVin 144 (198)
T PRK00377 98 EGEAPEVLPKLN-PKSDRYFIGG--GGEELPEIIQAALE--KIGKGGRIVAD 144 (198)
T ss_pred ECCHHHHHHCCC-CCCCEEEEEC--CCCCHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 525488772089-9889899978--87778999999998--57999899998
No 32
>KOG2187 consensus
Probab=99.43 E-value=6.1e-13 Score=97.63 Aligned_cols=147 Identities=17% Similarity=0.297 Sum_probs=106.3
Q ss_pred EEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 98641088674437888867785899999998776333645589678611001222100110168733011100012356
Q gi|254780405|r 6 IIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIR 85 (189)
Q Consensus 6 ii~G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~ 85 (189)
+|.-.+.|-+...+.+.--- |-.-.-|-+.++++-..... .++.++|+|||||.+|+ |++||+++|+.||+++.|+.
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ-~Nt~~aevLys~i~e~~~l~-~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~aV~ 419 (534)
T KOG2187 343 YITESLLGLTFRISPGAFFQ-TNTSAAEVLYSTIGEWAGLP-ADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDAVE 419 (534)
T ss_pred EEEEECCCEEEEECCCHHHC-CCCHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCEEH-HHHCCCCCEEEEECCHHHCC
T ss_conf 77730077689977631411-47088899999999970899-88479986306884000-01026661210233845444
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC---C-CCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 6764200133221002234456654210034444---3-101513431000288898887448888974999981778
Q gi|254780405|r 86 LIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPF---Q-LVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 86 ~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~f---D-iIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
-+++|++.++.+ |++++++-+.+.........+ + +..+||| ..++...++..|.... ++--++++-+...
T Consensus 420 dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPp-R~Glh~~~ik~l~~~~--~~~rlvyvSCn~~ 493 (534)
T KOG2187 420 DAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPP-RKGLHMKVIKALRAYK--NPRRLVYVSCNPH 493 (534)
T ss_pred HHHHCCHHCCCC-CCEEEECCHHHCCCHHCCCCCCCCCEEEEECCC-CCCCCHHHHHHHHHCC--CCCCEEEEECCHH
T ss_conf 355400115865-402430642001501205678887568997888-6761099999998534--7550589971667
No 33
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=4.5e-13 Score=98.40 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 78589999999877633364558967861100122210011016-87330111000123566764200133221002234
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~ 104 (189)
.|+.=||-...+-|+- -.|..++|++||||++++||+-+ .-.+|++||+++++++.+++|++++++. |+++++
T Consensus 23 mTK~EVRa~~l~kL~l-----~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~-nv~ii~ 96 (196)
T PRK07402 23 LTKREVRLLLISQLRL-----EPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVK-NVEVIE 96 (196)
T ss_pred CCHHHHHHHHHHHHCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEEE
T ss_conf 7889999999997089-----9999999947887799999998789988999976888999999989972999-879997
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 456654210034444310151343100028889888744888897499998
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+++.+.+.... ..+|.||+- +.+...++++.+.. .|+++|.+++-
T Consensus 97 g~ape~L~~l~-p~pD~vFIG---Gg~~l~~il~~~~~--~L~pgGriVin 141 (196)
T PRK07402 97 GSAPECLAQLA-PAPDRICIE---GGRPIKEILQAVWQ--YLKPGGRLVAT 141 (196)
T ss_pred CCCHHHHHHCC-CCCCEEEEC---CCCCHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 26366684089-999999984---89688999999998--67999899998
No 34
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.40 E-value=2.8e-12 Score=93.73 Aligned_cols=155 Identities=23% Similarity=0.309 Sum_probs=102.7
Q ss_pred CCCCCCH--HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8867785--89999999877633364558967861100122210011016873301110001235667642001332210
Q gi|254780405|r 22 RSIRPSD--SRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 22 ~~~RPt~--~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
...||++ -+.--++-|+=. --.|..+||-|||||++-+||---|| +|+..|.|.+.+.-++.|++..+.+ .
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~-----v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~-~ 246 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLAR-----VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE-D 246 (347)
T ss_pred CCCCCCCCCHHHHHHHHHHHC-----CCCCCEEECCCCCCCHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHHHCCC-C
T ss_conf 856768859899999877741-----64698764576783488883664275-6760323799985566415662767-6
Q ss_pred HHHHHH-HHHHHHHHCCCCCCCCCCCCHHHHH----------CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC-CCCC
Q ss_conf 022344-5665421003444431015134310----------002888988874488889749999817788867-5788
Q gi|254780405|r 100 CNIFFR-DVLRLGKIGNISPFQLVYLDPPYGQ----------GLAQQALAIIDKEGWLEPNALVIIEEYAGTCIS-VGAA 167 (189)
Q Consensus 100 ~~ii~~-D~~~~~~~~~~~~fDiIf~DPPY~~----------~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~-~~~~ 167 (189)
+.+... ||.++. ...+.+|-|..||||+. .++.+.++.+. ..|+++|.+++-.+.....+ ...+
T Consensus 247 ~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~--evLk~gG~~vf~~p~~~~~~~~~~~ 322 (347)
T COG1041 247 YPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS--EVLKPGGRIVFAAPRDPRHELEELG 322 (347)
T ss_pred EEEEEECCCCCCC--CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHCCCEEEEECCCCCHHHHHHCC
T ss_conf 1688730221277--88774235884699871002455528999999999999--8730484899961786055676439
Q ss_pred CEEE---EEEECCCEEEEEEECC
Q ss_conf 5799---9834185699986507
Q gi|254780405|r 168 FHFL---QERKYGDTKIYFFSYN 187 (189)
Q Consensus 168 ~~~~---~~k~yG~t~i~f~~~n 187 (189)
|+++ .++..|.-.-.++..+
T Consensus 323 f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 323 FKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred CEEEEEEEEEECCCEEEEEEEEE
T ss_conf 65999997764174689999986
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=5.7e-13 Score=97.80 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 7785899999998776333645589678611001222100110-168733011100012356676420013322100223
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEAL-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEal-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
-+|+.-||--..+-|... .|.+++|.+||||++++|++ ..-..+|+++|.|+++++.+++|++++++ +|++++
T Consensus 16 p~TK~EIRal~ls~L~~~-----~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv 89 (187)
T COG2242 16 PMTKEEIRALTLSKLRPR-----PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVV 89 (187)
T ss_pred CCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 986799899889860889-----99989995788668999999739885599992588899999999998499-967999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 4456654210034444310151343100028889888744888897499998
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
.+|+.+.+... ..+|.||+- +....+.+++.+.. .|+++|.+++-
T Consensus 90 ~g~Ap~~L~~~--~~~daiFIG---Gg~~i~~ile~~~~--~l~~ggrlV~n 134 (187)
T COG2242 90 EGDAPEALPDL--PSPDAIFIG---GGGNIEEILEAAWE--RLKPGGRLVAN 134 (187)
T ss_pred ECCCHHHHCCC--CCCCEEEEC---CCCCHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 54645763699--999999987---98777899999999--71868769998
No 36
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=99.35 E-value=3.9e-13 Score=98.77 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=84.6
Q ss_pred CCCCCE-EEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 558967-8611001222100110168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 46 FLDSTR-MLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 46 ~~~~~~-vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+++.. ||++++|||-+++.|-..|++.|+.+|.||-|++.+|+|+..++. +..++++|.++- -.++|||+|..
T Consensus 18 ~~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~--~l~v~~~Dlf~~---v~geKFdviLF 92 (183)
T TIGR00537 18 ELKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNV--ELDVLETDLFEG---VRGEKFDVILF 92 (183)
T ss_pred HHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCC--CEEEEECCCCCC---CCCCCEEEEEE
T ss_conf 5169952899716804899998515882078863687999987731000266--404761113578---55551027730
Q ss_pred CHHHH----------------------HCCHHHHHHHHHHCCCCCCCEEEEE-ECCCC
Q ss_conf 13431----------------------0002888988874488889749999-81778
Q gi|254780405|r 125 DPPYG----------------------QGLAQQALAIIDKEGWLEPNALVII-EEYAG 159 (189)
Q Consensus 125 DPPY~----------------------~~~~~~~l~~l~~~~~L~~~gliii-E~~~~ 159 (189)
+|||- ....++.|.-+. .+|+++|.+++ .++..
T Consensus 93 NpPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp--~~lk~gGrv~l~~SSl~ 148 (183)
T TIGR00537 93 NPPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELP--EYLKEGGRVQLIQSSLS 148 (183)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HHHCCCCEEEEEEECCC
T ss_conf 789888876523476644333178730578888876568--88705998999960668
No 37
>KOG2904 consensus
Probab=99.35 E-value=1.8e-12 Score=94.84 Aligned_cols=144 Identities=20% Similarity=0.239 Sum_probs=102.3
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHH
Q ss_conf 0886744378888-677858999999987763336455896786110012221001101-68733011100012356676
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk 88 (189)
|.+-.|.+.++.- -||-|+-.=|++-.-+... ...++..+||+|||||++++.-++ .+-..|++||.++.|++.+.
T Consensus 112 F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~--~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904 112 FGDLDLVCKPGVLIPRPETEEWVEAVIDALNNS--EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CCCCEEEECCCEEECCCCHHHHHHHHHHHHHHH--HHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf 478548723874326846799999999997556--532666688705783188999983478734899853288999999
Q ss_pred HHHCCCCCCCCHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHHHC-----------CHHHHHH--------------H
Q ss_conf 42001332210022344----56654210034444310151343100-----------0288898--------------8
Q gi|254780405|r 89 RNSELLGVEKNCNIFFR----DVLRLGKIGNISPFQLVYLDPPYGQG-----------LAQQALA--------------I 139 (189)
Q Consensus 89 ~N~~~~~~~~~~~ii~~----D~~~~~~~~~~~~fDiIf~DPPY~~~-----------~~~~~l~--------------~ 139 (189)
+|++.+++++.+.+++- |+..- ......++|++..+|||-.. .++..+. .
T Consensus 190 eN~qr~~l~g~i~v~~~~me~d~~~~-~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~ 268 (328)
T KOG2904 190 ENAQRLKLSGRIEVIHNIMESDASDE-HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYW 268 (328)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHH
T ss_conf 88998741584689841222012565-54545752488538996555512232713302374454306663269999998
Q ss_pred HHHCCCCCCCEEEEEECC
Q ss_conf 874488889749999817
Q gi|254780405|r 140 IDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 140 l~~~~~L~~~gliiiE~~ 157 (189)
.....+|.++|.+.+|..
T Consensus 269 ~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904 269 LLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHCCCCCEEEEEEC
T ss_conf 766754566885889733
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=1.3e-12 Score=95.64 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 78589999999877633364558967861100122210011016-87330111000123566764200133221002234
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~ 104 (189)
-|+.=||-...+-|+- -.+..++|++||||++++||+-+ ...+|++||+++++++.+++|++++++. +++++.
T Consensus 13 mTK~EIRai~LskL~l-----~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~-nv~~i~ 86 (186)
T PRK08287 13 MTKEEVRALSLSKLEL-----HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCG-NIDIIP 86 (186)
T ss_pred CCHHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEEE
T ss_conf 7789999999997199-----9999999957887789999999789988999937989999999989972999-879993
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 4566542100344443101513431-00028889888744888897499998
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+++...+. +++|-||+- + .+..+++++.+.. .|+++|.+++-
T Consensus 87 g~Ap~~l~----~~pD~vFIG---Gsgg~l~~il~~~~~--~L~~gGriVin 129 (186)
T PRK08287 87 GEAPITLT----GKADAIFMG---GSGGHLTAIIDWALG--HLHPGGRLVLN 129 (186)
T ss_pred CCCCHHCC----CCCCEEEEE---CCCCCHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 77811035----789849997---478988999999997--57999899998
No 39
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=1.2e-12 Score=95.96 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 77858999999987763336455896786110012221001101687330111000123566764200133221002234
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~ 104 (189)
|=+++|.|=+ .. ..+|-.|||+|||.|-++|.++..|+.+|+++|+||.|++.+++|++++++++.++.++
T Consensus 174 rl~~ER~Rva--~~-------v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~ 244 (341)
T COG2520 174 RLSTERARVA--EL-------VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPIL 244 (341)
T ss_pred CCHHHHHHHH--HH-------HCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7447899998--63-------06998899835786540124665478639999459899999999998557655156796
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHH-HHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 456654210034444310151343-1000288898887448888974999981
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYLDPPY-GQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~DPPY-~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
+|+.++.... ..+|-|+|.=|. ........++.+ +++|+|.++.
T Consensus 245 gD~rev~~~~--~~aDrIim~~p~~a~~fl~~A~~~~------k~~g~iHyy~ 289 (341)
T COG2520 245 GDAREVAPEL--GVADRIIMGLPKSAHEFLPLALELL------KDGGIIHYYE 289 (341)
T ss_pred CCHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHHH------HCCCEEEEEE
T ss_conf 6488850204--6678898389872023389999985------1486799996
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=99.32 E-value=2.4e-12 Score=94.12 Aligned_cols=119 Identities=24% Similarity=0.330 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC-EEEECCCCCCCCHHHHHC-CCC-CCHHHHHHHHHHHHHHHHHHCCC-CCCCCHH
Q ss_conf 7858999999987763336455896-786110012221001101-687-33011100012356676420013-3221002
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDST-RMLNIFAGTGSVGFEALS-RGC-HYVLFVDNNSESIRLIRRNSELL-GVEKNCN 101 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~-~vlDlfaGsG~lgiEalS-rGA-~~v~~vE~~~~a~~~lk~N~~~~-~~~~~~~ 101 (189)
||+.=||--..+-|.-. .+. +++|.+||||+++|||.- .|- -+|++||+++++++.+++|++.+ ++ +++.
T Consensus 2 ~TK~EvR~l~L~~L~l~-----~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~-~~~~ 75 (135)
T TIGR02469 2 MTKREVRALTLAKLRLR-----PGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGV-SNIV 75 (135)
T ss_pred CCHHHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CCCE
T ss_conf 84788999999871789-----99946889605748389999973598607999853768987999999982899-9632
Q ss_pred HHHHHHH------HHHHH-CCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 2344566------54210-0344443101513431-00028889888744888897499998
Q gi|254780405|r 102 IFFRDVL------RLGKI-GNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 102 ii~~D~~------~~~~~-~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
++.+|+. ..... ...+.+|-||+- + ....+++++.+.. .|+++|.|++-
T Consensus 76 i~~g~ap~~~~~~~~~~~~~~~~~~Da~fvG---Gs~~~~~~il~~~~~--~l~~GGr~v~n 132 (135)
T TIGR02469 76 IVEGDAPEELLNSDAPEDSAKLPEPDAVFVG---GSGGKLEEILEAVER--RLRPGGRIVLN 132 (135)
T ss_pred EEECCCCCCCCCCCCCHHHCCCCCCCEEEEC---CCCHHHHHHHHHHHH--CCCCCCEEEEE
T ss_conf 5635568433367777100588746888883---897178999999985--05968888885
No 41
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=99.30 E-value=1.6e-12 Score=95.19 Aligned_cols=131 Identities=18% Similarity=0.305 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88886778589999999877633364558967861100122210011016873301110001235667642001332210
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
.+.-|-|=.. |=+-+..|----. ..-+|.--|+||||-|.++| ||++-..+|.+-|+++.++..++.|++.+++ +|
T Consensus 177 E~sFtQPNa~-vn~kMLeWA~~~~-~~~~g~DLLELYCGNGNFsL-aLA~~f~rVLATEiaK~SV~aAq~Ni~~N~i-dN 252 (361)
T TIGR02143 177 ENSFTQPNAA-VNQKMLEWALEVT-QNSKGMDLLELYCGNGNFSL-ALAQNFERVLATEIAKPSVNAAQYNIAANKI-DN 252 (361)
T ss_pred CCCCCCCCHH-HHHHHHHHHHHHH-CCCCCCCCCEEECCCCCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC-CC
T ss_conf 7872475189-9999999999983-58888720100026753104-4565333455430240247999999871798-83
Q ss_pred HHHHHHHHHHHHHHCCC----------------CCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 02234456654210034----------------44431015134310002888988874488889749999817788
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNI----------------SPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~----------------~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
++++...|+++-+...+ =.|.-||+||| ..|+..+.++++... +-++||-|...+
T Consensus 253 v~i~RlSAEEft~A~~~~R~F~RL~d~gIdL~~Y~f~tiFVDPP-RaGlD~~t~~Lv~~y-----~rIlYISCNP~T 323 (361)
T TIGR02143 253 VQIIRLSAEEFTEAMNGVREFRRLKDGGIDLKSYNFNTIFVDPP-RAGLDPDTVKLVQKY-----ERILYISCNPET 323 (361)
T ss_pred EEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCHHHHHHHHHC-----CCEEEEECCHHH
T ss_conf 10102327999998603776546566886334202560267798-888898999999625-----987998469689
No 42
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=2.2e-12 Score=94.39 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=82.2
Q ss_pred EEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 78611001222100110168733011100012356676420013322100223445665421003444431015134310
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ 130 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~ 130 (189)
+|||++||+|..+...+.++..+|+++|.|+.+++.++++....+. ++++++++|+.+... ....+||+|++++++..
T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~V~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPP-EADESFDVIISDPPLHH 78 (107)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEECCCHHHCCH-HHCCCEEEEEEECCEEC
T ss_conf 9999988879999999956898899998988899999998753278-864671488678863-20575319999175010
Q ss_pred --CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf --0028889888744888897499998
Q gi|254780405|r 131 --GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 131 --~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
....+.++.+.+ +|+|+|.+++.
T Consensus 79 ~~~~~~~~l~~~~~--~LkpgG~~~is 103 (107)
T cd02440 79 LVEDLARFLEEARR--LLKPGGVLVLT 103 (107)
T ss_pred CCCCHHHHHHHHHH--HCCCCCEEEEE
T ss_conf 65189999999998--74858199999
No 43
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.3e-12 Score=92.60 Aligned_cols=129 Identities=22% Similarity=0.349 Sum_probs=89.6
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74437888867785899999998776333645589678611001222100110168-73301110001235667642001
Q gi|254780405|r 15 LLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 15 ~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
.+.+.++...+=.-|+=-+-|-+.| +....+ +|||++||.|-+|+.++.+. -.+++++|.|..|++..++|++.
T Consensus 130 ~~~t~pGVFS~~~lD~GS~lLl~~l----~~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 130 TFKTLPGVFSRDKLDKGSRLLLETL----PPDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHC----CCCCCC-CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6994898775988683889999737----755699-68870788429999999868987289982669999998876997
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHH------HHHHHHHHCCCCCCCEEEEEE
Q ss_conf 33221002234456654210034444310151343100028------889888744888897499998
Q gi|254780405|r 94 LGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQ------QALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 94 ~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~------~~l~~l~~~~~L~~~gliiiE 155 (189)
++.++- +++..|+..-.+ .+||.|.++|||..+... +++.. ....|+++|-+-+-
T Consensus 205 N~~~~~-~v~~s~~~~~v~----~kfd~IisNPPfh~G~~v~~~~~~~ii~~--A~~~L~~gGeL~iV 265 (300)
T COG2813 205 NGVENT-EVWASNLYEPVE----GKFDLIISNPPFHAGKAVVHSLAQEIIAA--AARHLKPGGELWIV 265 (300)
T ss_pred CCCCCC-EEEEECCCCCCC----CCCCEEEECCCCCCCCCHHHHHHHHHHHH--HHHHHCCCCEEEEE
T ss_conf 398763-799812446654----40068984888467710167889999999--99760459779999
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=8e-12 Score=91.02 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=86.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 86778589999999877633364558967861100122210011016873301110001235667642001332210022
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
++|---++.|..+.+||... .+++|.+|||++||+|++++++..||| +|+++|+++..++.+++.++..+..+++++
T Consensus 40 tVR~Gr~~mr~~~l~wl~~~--~dl~G~rVLDaGCGtG~la~~LA~~Ga-~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F 116 (230)
T PRK07580 40 TVRAGHQRMRDTVLSWLPAD--GDLTGLSILDAGCGTGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLDGNITF 116 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99976999999999973105--997899898818786787999997799-899983899999999975586278767538
Q ss_pred HHHHHHHHHHHCCCCCCCCCCC-CH--HHHHCCHHHHHHHHHH
Q ss_conf 3445665421003444431015-13--4310002888988874
Q gi|254780405|r 103 FFRDVLRLGKIGNISPFQLVYL-DP--PYGQGLAQQALAIIDK 142 (189)
Q Consensus 103 i~~D~~~~~~~~~~~~fDiIf~-DP--PY~~~~~~~~l~~l~~ 142 (189)
..+|.... ...||.|.+ |= =|........+..+..
T Consensus 117 ~~gDle~~-----~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~ 154 (230)
T PRK07580 117 EVGDLESL-----LGSFDTVVCLDVLIHYPQEDAERMLAHLAS 154 (230)
T ss_pred EECCCCCC-----CCCCCCHHHCCCEEECCHHHHHHHHHHHHH
T ss_conf 96676545-----798660233371554578899999999972
No 45
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=2.7e-12 Score=93.76 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 55896786110012221001101687-33011100012356676420013322100223445665421003444431015
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+. .+||||+||.|.+|+.++.+.. .+++++|.|..|++.+++|++.++++ .+++..|++..++ .+||.|.+
T Consensus 195 ~~~-g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~--~~v~~sd~~~~v~----~~fD~Ivs 267 (342)
T PRK09489 195 HTK-GKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLE--GEVFASNVFSEIK----GRFDMIIS 267 (342)
T ss_pred CCC-CCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC--CEEEECCCCCCCC----CCCCEEEE
T ss_conf 248-8478606781799999998699976999968899999999989980988--6899756445655----67898996
Q ss_pred CHHHHHCCH--HHHHH-HHH-HCCCCCCCEEEEEECCCCC
Q ss_conf 134310002--88898-887-4488889749999817788
Q gi|254780405|r 125 DPPYGQGLA--QQALA-IID-KEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 125 DPPY~~~~~--~~~l~-~l~-~~~~L~~~gliiiE~~~~~ 160 (189)
+|||..+.. ..+.+ .|. ..+.|+++|-+.+--.+..
T Consensus 268 NPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iVANr~L 307 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8852157526589999999999986124988999981898
No 46
>KOG3420 consensus
Probab=99.23 E-value=3.9e-12 Score=92.85 Aligned_cols=156 Identities=15% Similarity=0.288 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 77858999999987763336455896786110012221001101687330111000123566764200133221002234
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~ 104 (189)
-||+.-+--++..++.+.+ .+++|+.++||+||+|-+++.+.--++..|+.+|+|++|+++..+|++.+.+ ++.+.+
T Consensus 26 Y~T~p~iAasM~~~Ih~Ty-gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLq 102 (185)
T KOG3420 26 YPTRPHIAASMLYTIHNTY-GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQ 102 (185)
T ss_pred CCCCHHHHHHHHHHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHH--HHHEEE
T ss_conf 7996789999999998620-1204746225247611567775057873378640588999998616687523--342122
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHC-CCCCCCEEEEEECCC--CCCCCCCCCCEEEEEEECCCEEE
Q ss_conf 456654210034444310151343100028889888744-888897499998177--88867578857999834185699
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKE-GWLEPNALVIIEEYA--GTCISVGAAFHFLQERKYGDTKI 181 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~-~~L~~~gliiiE~~~--~~~~~~~~~~~~~~~k~yG~t~i 181 (189)
+|...... ....||...+||||+...-...++.+... ++.+ .+.-++..+ .-...+|..++..+.+. -+..+
T Consensus 103 cdildle~--~~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~--~VySLHKtSTRey~~kLP~~ykFHK~k~-vdiaV 177 (185)
T KOG3420 103 CDILDLEL--KGGIFDTAVINPPFGTKKKGADMEFVSAALKVAS--AVYSLHKTSTREYRYKLPKLYKFHKRKE-VDIAV 177 (185)
T ss_pred EECCCHHC--CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHCCCHHHHHHHCCHHHHHHHCCC-CCEEE
T ss_conf 22155110--5876766786689876434433899999999999--9998731328899985605441222023-00344
Q ss_pred EEEECCC
Q ss_conf 9865078
Q gi|254780405|r 182 YFFSYNP 188 (189)
Q Consensus 182 ~f~~~np 188 (189)
-|+++-|
T Consensus 178 Dlirfe~ 184 (185)
T KOG3420 178 DLIRFEP 184 (185)
T ss_pred EEEEEEC
T ss_conf 5787304
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=99.22 E-value=1.2e-11 Score=89.88 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=79.2
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 8967861100122210011016-87330111000123566764200133221----0022344566542100-3444431
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEK----NCNIFFRDVLRLGKIG-NISPFQL 121 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~----~~~ii~~D~~~~~~~~-~~~~fDi 121 (189)
.|.+|||++||=|.|+ |+|+| ||.+|+.||...+.+++++..++.-+++. +++..+.++.++.+.. ....||+
T Consensus 84 ~G~~vLDVGCGGGlLs-E~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~FD~ 162 (275)
T TIGR01983 84 SGLRVLDVGCGGGLLS-EPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSFDV 162 (275)
T ss_pred CCCEEEEECCCHHHHH-HHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 8977998427857888-999755884257752117799999988873340233111145444307887305578415733
Q ss_pred CCCCHHHHHCCH------HHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 015134310002------8889888744888897499998
Q gi|254780405|r 122 VYLDPPYGQGLA------QQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 122 If~DPPY~~~~~------~~~l~~l~~~~~L~~~gliiiE 155 (189)
|.+ .+.. +..+..+. .+|||||.+++-
T Consensus 163 V~~-----mEvlEHV~dp~~f~~~c~--~llkPgG~lF~S 195 (275)
T TIGR01983 163 VTC-----MEVLEHVPDPQAFIKACA--QLLKPGGILFFS 195 (275)
T ss_pred EEE-----EEEEECCCCHHHHHHHHH--HHCCCCCCEEEE
T ss_conf 764-----320000278889999999--850899848973
No 48
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.2e-11 Score=89.93 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCC----------------------------------
Q ss_conf 8589999999877633364558967861100122210011016873----------------------------------
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCH---------------------------------- 72 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~---------------------------------- 72 (189)
-..-+||+|-+-|--..+ .-.+..++|.+||||.+-|||+-+++.
T Consensus 171 g~ApLketLAaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 171 GPAPLKETLAAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 887856999999999739-9999834168877347999999734456876332200455432138889999999999865
Q ss_pred ------CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC---------CHHHHH
Q ss_conf ------30111000123566764200133221002234456654210034444310151343100---------028889
Q gi|254780405|r 73 ------YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQG---------LAQQAL 137 (189)
Q Consensus 73 ------~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~---------~~~~~l 137 (189)
..+.+|+|+++++.++.|++..++.+.+++.++|+..+-... ..+|+|.+||||+.- +|....
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCC--CCCCEEEECCCCHHHCCCHHHHHHHHHHHH
T ss_conf 147666589874898999999998997698832899974432166876--669989958983011177046999999999
Q ss_pred HHHHHCCCCCCCEEEEEE
Q ss_conf 888744888897499998
Q gi|254780405|r 138 AIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 138 ~~l~~~~~L~~~gliiiE 155 (189)
..+.+ .+...+..++-
T Consensus 328 ~~lk~--~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKR--LLAGWSRYVFT 343 (381)
T ss_pred HHHHH--HHCCCCEEEEE
T ss_conf 99998--72577369997
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.21 E-value=2.6e-11 Score=88.00 Aligned_cols=113 Identities=23% Similarity=0.301 Sum_probs=90.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-HH
Q ss_conf 86778589999999877633364558967861100122210011016873301110001235667642001332210-02
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN-CN 101 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~-~~ 101 (189)
++|-=-+..++.+|.||+-.. -+.|++|||-+||||-|++|.+.+|| +|.++|++++.++.+++-.+..+..+| ++
T Consensus 31 ~vR~Gr~~~~~~~l~wL~~d~--~l~G~~vlDAGCGtGllsi~LAk~GA-~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~ 107 (224)
T TIGR02021 31 TVREGRAAMREKLLEWLPKDR--SLKGKKVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVELARERAEKEDEAGNLVE 107 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCC--CCCCCEEEECCCCCCHHHHHHHHCCC-EEEEEHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 999769999999998546788--98767777558893154498884798-686623768999999862100210167003
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC-CH--HHHHCCHHHHHHHHHH
Q ss_conf 23445665421003444431015-13--4310002888988874
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLVYL-DP--PYGQGLAQQALAIIDK 142 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiIf~-DP--PY~~~~~~~~l~~l~~ 142 (189)
+--+|.... ...+||.|.+ |= =|..+.....|+.|..
T Consensus 108 FeV~Dl~s~----~~G~fD~VV~mDvlIHYp~~d~~~~l~~Las 147 (224)
T TIGR02021 108 FEVNDLESL----ELGKFDAVVAMDVLIHYPAEDIAKALEHLAS 147 (224)
T ss_pred EEECCHHHH----CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHH
T ss_conf 545304441----3898555675212232022227999999887
No 50
>KOG1499 consensus
Probab=99.16 E-value=2e-11 Score=88.71 Aligned_cols=105 Identities=18% Similarity=0.308 Sum_probs=83.8
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64558967861100122210011016873301110001235667642001332210022344566542100344443101
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
..-++++.|||.+||||.+++.|+.-||++|++||.+.-+ +.+++.++.+++++.++++++.+.+. . ...++.|+|.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~-LP~eKVDiIv 132 (346)
T KOG1499 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-E-LPVEKVDIIV 132 (346)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEE-E-CCCCCEEEEE
T ss_conf 4330797899757881288999887375339999626899-99999998568660599950305787-6-4755402996
Q ss_pred CCHHH-HH-CCHHHHHHHH--HHCCCCCCCEEEE
Q ss_conf 51343-10-0028889888--7448888974999
Q gi|254780405|r 124 LDPPY-GQ-GLAQQALAII--DKEGWLEPNALVI 153 (189)
Q Consensus 124 ~DPPY-~~-~~~~~~l~~l--~~~~~L~~~glii 153 (189)
.. | +. -+++..|+-+ +..+||+++|+++
T Consensus 133 SE--WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499 133 SE--WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 30--124787776566645533330047795576
No 51
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.15 E-value=1.2e-11 Score=90.01 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=89.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCH
Q ss_conf 886778589999999877633364558967861100122210011016873301110001235667642001332-2100
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGV-EKNC 100 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~-~~~~ 100 (189)
..|-|-.|-.++. +.... -+|.+|||.|.|-|-.+|||+.|||.+|+.||+|+..++.++-|==+-++ +..+
T Consensus 115 ~~tdP~~Dt~~Kv--~~V~~-----~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i 187 (287)
T COG2521 115 KGTDPLEDTLAKV--ELVKV-----KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAI 187 (287)
T ss_pred CCCCCHHHHHHHH--HEECC-----CCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf 6768078887566--24443-----6687844324671389999987587489999608772774135889842020031
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHH--------HHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 223445665421003444431015134--------31000288898887448888974999
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPP--------YGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPP--------Y~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
+++.+|+.++.+....+.||.|.-||| |...+|.++.. +|+++|-+.
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~R------iLkrgGrlF 242 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYR------ILKRGGRLF 242 (287)
T ss_pred EEECCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH------HCCCCCCEE
T ss_conf 7861659999741886530168607973310235768999999999------707698079
No 52
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=99.11 E-value=1.2e-10 Score=84.09 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 55896786110012221001101687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.++|+++||++||.|.++.....+|| +|+.||.++++++.+++.++..++ +++..++++.++... ..++||+|.+=
T Consensus 46 ~l~G~~ILDVGCGgG~lse~LAr~Ga-~VtGID~S~~~I~~Ar~ha~~~~l--~i~y~~~~~e~l~~~-~~~~FDvV~~~ 121 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-TVTGIDASEENIEVARLHALESGL--KIDYRQITAEELAAE-HPGQFDVVTCM 121 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCC--CCEEEECCHHHHHHH-CCCCEEEEEEE
T ss_conf 66899899975589711289996799-799987998999999998564434--511675147665430-57863477442
Q ss_pred HHH-HHCCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 343-10002888988874488889749999817
Q gi|254780405|r 126 PPY-GQGLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 126 PPY-~~~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
==- .-...+..+..+. ++|+|||++++..-
T Consensus 122 EVlEHV~d~~~~l~~~~--rlLKPGG~l~lsTi 152 (233)
T PRK05134 122 EMLEHVPDPASFIRACA--KLVKPGGLVFFSTL 152 (233)
T ss_pred HHHHHCCCHHHHHHHHH--HHHCCCCEEEEECC
T ss_conf 14775389999999999--97389914999726
No 53
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=99.08 E-value=1.6e-10 Score=83.32 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999998776333645589678611001222100---110168733011100012356676420013322100223445
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGF---EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgi---EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
..-..++.+|... ..-+++|++++++|.-++ +++..++ +++.+|.|++.++.+++|++..+++++++++.+|
T Consensus 30 ~~~g~~L~~l~~~----~~ak~iLEiGT~~GySal~lA~~l~~~g-~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gd 104 (204)
T pfam01596 30 PEEGQFLSMLVKL----VGAKRTLEIGVFTGYSLLATALALPEDG-KITACDIDREAYEIGLPFIQKAGVADKIEFRVGD 104 (204)
T ss_pred HHHHHHHHHHHHH----HCCCEEEEEECCCCHHHHHHHHHCCCCC-EEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 9999999999997----5987899983432599999998489996-8999980489999999999977987447999874
Q ss_pred HHHHHHHC----CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 66542100----34444310151343100028889888744888897499998
Q gi|254780405|r 107 VLRLGKIG----NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 107 ~~~~~~~~----~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+.+.++.. ...+||+||+|- ++..|...++.+.. +|+++|+|++-
T Consensus 105 A~~~l~~l~~~~~~~~fD~vFiDa--dK~~Y~~y~e~~~~--lL~~gGiii~D 153 (204)
T pfam01596 105 ALKTLEQLVEDKPLGEFDFAFVDA--DKSSYPNYYERLLE--LVKVGGLIAID 153 (204)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEC--CHHHHHHHHHHHHH--HHCCCEEEEEE
T ss_conf 999999998447777643899818--88777999999998--63698099994
No 54
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.03 E-value=1.7e-10 Score=83.09 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99999998776333645589678611001222100110168--7330111000123566764200133221002234456
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG--CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG--A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
+-|..+.+.+.. -.|.+|||++||||.++++.+.+. ..+|+++|.++..++.+++.++..+...+++++++|+
T Consensus 38 ~Wr~~~v~~l~~-----~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da 112 (239)
T PRK00216 38 VWRRKTIKWLGV-----RPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDA 112 (239)
T ss_pred HHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 999999986278-----999989884577638799999972997679999198899999999999738988850798235
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHC---CHHHHHHHHHHCCCCCCCEEEE-EECCC
Q ss_conf 654210034444310151343100---0288898887448888974999-98177
Q gi|254780405|r 108 LRLGKIGNISPFQLVYLDPPYGQG---LAQQALAIIDKEGWLEPNALVI-IEEYA 158 (189)
Q Consensus 108 ~~~~~~~~~~~fDiIf~DPPY~~~---~~~~~l~~l~~~~~L~~~glii-iE~~~ 158 (189)
.++ + .....||+|.+- |+-. ..+..+.-+ ...|+|||.++ +|.++
T Consensus 113 ~~l-p-f~d~sfD~v~~~--f~l~~~~d~~~~l~E~--~RVLkPGG~l~ilefs~ 161 (239)
T PRK00216 113 EAL-P-FPDNSFDAVTIA--FGLRNVPDIDKALREM--YRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCC-C-CCCCCCCCCCCC--CEEEECCCHHHHHHHH--HHHCCCCEEEEEEECCC
T ss_conf 568-8-876667650026--1567148679999999--98766480899997589
No 55
>PRK08317 hypothetical protein; Provisional
Probab=98.98 E-value=5.3e-10 Score=80.20 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 778589999999877633364558967861100122210011016-8-73301110001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
+|--.+-|+.+|..|+- -.|.+|||++||+|.+..+...+ | ..+|+.+|.++..++.+++.++... .++++
T Consensus 1 ~p~~~~~r~~~l~~L~l-----~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~ 73 (241)
T PRK08317 1 LPDFRRYRARTFELLAV-----QPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL--SNVEF 73 (241)
T ss_pred CCHHHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEE
T ss_conf 92768999999973699-----997999996641749999999974999789999698899999999986228--96499
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 344566542100344443101513431-000288898887448888974999981
Q gi|254780405|r 103 FFRDVLRLGKIGNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 103 i~~D~~~~~~~~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
.++|+..+ + .....||+|++.=-+. -...+..+..+. ..|+|||.+++..
T Consensus 74 ~~~d~~~l-p-~~d~sfD~v~~~~~l~h~~d~~~~l~e~~--RvLkPGG~~vi~d 124 (241)
T PRK08317 74 VRGDADGL-P-FPDESFDAVRSDRVLQHLEDPRRALAEMA--RVLRPGGRAVVLD 124 (241)
T ss_pred EECCHHHC-C-CCCCCCCEEEHHHHHHHCCCHHHHHHHHH--HHCCCCCEEEEEE
T ss_conf 95546435-8-98887045622115762258999999999--9818883899996
No 56
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.97 E-value=9.3e-10 Score=78.76 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 858999999987763336455896786110012221001---10168733011100012356676420013322100223
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
+.......++.+|... ...+++|+++.+.|--++- ++. .-.+++.+|.|++.++.+++|++..++.++++++
T Consensus 42 i~~~e~g~~L~~L~~~----~~~k~iLEiGT~~GySal~mA~~l~-~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~ 116 (219)
T COG4122 42 IIDPETGALLRLLARL----SGPKRILEIGTAIGYSALWMALALP-DDGRLTTIERDEERAEIARENLAEAGVDDRIELL 116 (219)
T ss_pred CCCHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8781489999999973----4986499963523799999996388-8976999707989999999999975976528988
Q ss_pred H-HHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 4-456654210034444310151343100028889888744888897499998
Q gi|254780405|r 104 F-RDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 104 ~-~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
. +|+.+.+......+||+||+|- ++..+.+.++.+.. +|+++|+|++-
T Consensus 117 ~~gdal~~l~~~~~~~fDliFIDa--dK~~yp~~le~~~~--lLr~GGliv~D 165 (219)
T COG4122 117 LGGDALDVLSRLLDGSFDLVFIDA--DKADYPEYLERALP--LLRPGGLIVAD 165 (219)
T ss_pred ECCCHHHHHHHCCCCCCCEEEEEC--CHHHCHHHHHHHHH--HHCCCCEEEEE
T ss_conf 357479999733478856899837--84359999999999--73789689983
No 57
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=98.97 E-value=1.3e-09 Score=77.97 Aligned_cols=140 Identities=19% Similarity=0.324 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH-------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 85899999998776333645589678611001222100110-------16873301110001235667642001332210
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEAL-------SRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEal-------SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
|-=+|-+.|+-+=. .|-..+.=.+..|||||.|.+||-|+ ... -++|.||++.+|+..+++-++.+|++ +
T Consensus 217 TNP~VA~~LYATAr-~WV~e~~~~~mWDLFCGVGGFgLHCAkalqekw~p~-~~lTGIEI~~eAIa~A~~SA~~lGl~-~ 293 (386)
T TIGR02085 217 TNPKVAAQLYATAR-QWVRELPVKQMWDLFCGVGGFGLHCAKALQEKWGPD-TQLTGIEIESEAIACAKQSAKILGLE-N 293 (386)
T ss_pred CCHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEEEEECHHHHHHHHHHHHHHCHH-H
T ss_conf 78788988768899-999745711032010465412789989876415897-04431343778999999999873533-2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC---CCCCCCCEEEEE
Q ss_conf 02234456654210034444310151343100028889888744888897499998177888---675788579998
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTC---ISVGAAFHFLQE 173 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~---~~~~~~~~~~~~ 173 (189)
+.+-.-|..++........=|+|.++|| .-+...++-+.|.. +.|.=++|=-|...+. +..-.+|++++.
T Consensus 294 ~~F~aLDsa~f~~~~~e~~PeLVlVNPP-RRGiG~eL~~~L~~---~aP~fILYSSCNa~TM~KDi~~L~~Y~~~rv 366 (386)
T TIGR02085 294 LSFAALDSAKFATAQAESVPELVLVNPP-RRGIGKELCDYLSQ---LAPKFILYSSCNAQTMAKDIAELSGYKIERV 366 (386)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 1045445799998623688965776788-88876068999975---0886266216772258999975568835776
No 58
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.96 E-value=9.3e-10 Score=78.76 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78589999999877633364558967861100122210011016--------8733011100012356676420013322
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--------GCHYVLFVDNNSESIRLIRRNSELLGVE 97 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--------GA~~v~~vE~~~~a~~~lk~N~~~~~~~ 97 (189)
-|+.-|-+-+-.++... .+.+|+|.+||||.+-++|... ...+++..|.++.+..+++.|+-.-+.+
T Consensus 29 fTPr~Vv~lmv~ll~p~-----~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312)
T pfam02384 29 YTPREVSKLIVELLEPK-----PGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312)
T ss_pred CCCHHHHHHHHHHHCCC-----CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88789999999982899-----9998821687733789999999998437855655636889989999999999984798
Q ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf -100223445665421003444431015134310
Q gi|254780405|r 98 -KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ 130 (189)
Q Consensus 98 -~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~ 130 (189)
....+.++|.+.-.......+||+|+++|||+.
T Consensus 104 ~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~ 137 (312)
T pfam02384 104 YNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQ 137 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 8745521477655767665455118983786466
No 59
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.95 E-value=5.7e-10 Score=80.00 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=103.2
Q ss_pred EEEEEEEECCEEEECCCC---------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH-HHCCCCCC
Q ss_conf 199864108867443788---------88677858999999987763336455896786110012221001-10168733
Q gi|254780405|r 4 IRIIGGKFQRRLLHTPQN---------RSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE-ALSRGCHY 73 (189)
Q Consensus 4 mrii~G~~kg~~l~~~~~---------~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE-alSrGA~~ 73 (189)
|-|.-|+. +|.+|+. .-.+|.+..-|---.-.+.... .-.+.++||.+||||.=||- |..-|+.+
T Consensus 3 ~~i~EG~~---~i~vP~~~~~~~~~~pVFYNP~~~~nRDlsvl~~~~~~--~~~~~~ilDalsasGiR~iRy~~E~~~~~ 77 (376)
T PRK04338 3 MIVREGKV---KILVPDPSKGPSKWAPVFYNPAMELNRDISVLALKAFG--PKRRKSVLDALSASGIRGIRYALETGVEK 77 (376)
T ss_pred EEEEECEE---EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHCCCCE
T ss_conf 79981518---99836866678878862238513043429999999974--20697687406765499999987279987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 01110001235667642001332210022344566542100344443101513431000288898887448888974999
Q gi|254780405|r 74 VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 74 v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
|++.|.|+.|++.+++|++.++++ ++++.+.|+..++.. ...+||+|=+|| |+.. ...|+...+. ++.+|++.
T Consensus 78 v~~NDi~~~a~~~i~~N~~~N~~~-~~~v~~~dAn~lm~~-~~~~fD~IDlDP-fGSp--~pflDsAi~~--v~~~GlL~ 150 (376)
T PRK04338 78 VILNDINPDAVELIKKNLELNGLE-NAEVFNEDANVLLHE-NERKFDVVDIDP-FGSP--APFLDSAIRA--LRRGGLLC 150 (376)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHH-CCCCCCEEEECC-CCCC--CHHHHHHHHH--HHCCCEEE
T ss_conf 999569999999999999982998-269813248999983-787587786789-9992--0879999998--40398899
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCEEE
Q ss_conf 9817788867578857999834185699
Q gi|254780405|r 154 IEEYAGTCISVGAAFHFLQERKYGDTKI 181 (189)
Q Consensus 154 iE~~~~~~~~~~~~~~~~~~k~yG~t~i 181 (189)
+-.. +...+.....-.-.|+||-..+
T Consensus 151 vTaT--D~a~L~G~~~~~~~r~Yga~~~ 176 (376)
T PRK04338 151 VTAT--DTAVLCGAYPKSCLRKYGAVPL 176 (376)
T ss_pred EEEC--CCCCCCCCCCHHHHHHHCCEEC
T ss_conf 9946--8610048880468787177632
No 60
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=98.95 E-value=5.2e-10 Score=80.24 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=75.5
Q ss_pred CCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 58967861100122210011016--8733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
..|.+|||++||||.++++.+.+ ...+|+.+|.++..++.+++.++..+. .++++.++|+.++. ...+.||+|++
T Consensus 46 ~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~-~~i~~~~~da~~lp--f~d~sfD~v~~ 122 (233)
T pfam01209 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGK-YNIEFLQGNAEELP--FEDDSFDIVTI 122 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCCEEEEECCCCCC--CCCCCCCHHHH
T ss_conf 9999899825405889999999849997499996999999999999985699-98369982166688--66656573142
Q ss_pred CHHHHHCCHHHHHHHHHH-CCCCCCCEEEEE-ECC
Q ss_conf 134310002888988874-488889749999-817
Q gi|254780405|r 125 DPPYGQGLAQQALAIIDK-EGWLEPNALVII-EEY 157 (189)
Q Consensus 125 DPPY~~~~~~~~l~~l~~-~~~L~~~gliii-E~~ 157 (189)
- |+-...++.-..+.+ ...|+|||.+++ |-+
T Consensus 123 ~--fglrn~~d~~~al~E~~RVLKPGG~l~ilefs 155 (233)
T pfam01209 123 S--FGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFS 155 (233)
T ss_pred H--HHHHCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 1--01212588899999999872789789999788
No 61
>PRK11036 putative metallothionein SmtA; Provisional
Probab=98.94 E-value=2.7e-09 Score=75.99 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 58999999987763336455896786110012221001101687330111000123566764200133221002234456
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
...+.+.|.-+|.+. + -.-.+|||.+||+|.++...+.+|+ .||.+|.+++++..++++++..++..+++++++++
T Consensus 27 ~avl~~dl~~~l~~l-~--~~plrVLDvG~G~G~~a~~lA~~Gh-~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~ 102 (256)
T PRK11036 27 QAIVWQDLDRLLAEL-G--PRPLRVLDAGGGEGQTAIKMAELGH-QVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA 102 (256)
T ss_pred HHHHHHHHHHHHHHC-C--CCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 999999999999846-9--9998399837987798999997799-79986699999999999988649661279885689
Q ss_pred HHHHHHCCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 6542100344443101513431-0002888988874488889749999
Q gi|254780405|r 108 LRLGKIGNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 108 ~~~~~~~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
.++.+.. ..+||+|.+----. -..-...+..+.. +++|||++-+
T Consensus 103 q~l~~~~-~~~fDlVlcHaVLE~v~dP~~~l~~l~~--~lkPGG~lSL 147 (256)
T PRK11036 103 QDIAQHL-ETPVDLILFHAVLEWVADPKSVLQTLWS--VLRPGGALSL 147 (256)
T ss_pred HHHHHHC-CCCCCEEEEEHHHHHCCCHHHHHHHHHH--HHCCCCEEEE
T ss_conf 9885423-6886678651367723789999999999--7589937999
No 62
>KOG2730 consensus
Probab=98.94 E-value=3.3e-10 Score=81.41 Aligned_cols=100 Identities=21% Similarity=0.408 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 78589999999877633364558967861100122210011016873301110001235667642001332210022344
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~ 105 (189)
-|++++.|++-+-... .+..-.++|.|||.|.=.|....+|+ .|++||+|+.-+.++++|++..|.+++++++++
T Consensus 76 vTpe~ia~~iA~~v~~----~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730 76 VTPEKIAEHIANRVVA----CMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred ECCHHHHHHHHHHHHH----HCCCCHHHHHHHCCCCHHHHHHHHCC-EEEEEECCHHHHHHHHCCCEEECCCCEEEEEEC
T ss_conf 2518999999878887----33743002545368842889987188-079985267888877606503257750588833
Q ss_pred HHHHHHHHC--CCCCCCCCCCCHHHHH
Q ss_conf 566542100--3444431015134310
Q gi|254780405|r 106 DVLRLGKIG--NISPFQLVYLDPPYGQ 130 (189)
Q Consensus 106 D~~~~~~~~--~~~~fDiIf~DPPY~~ 130 (189)
|++...+.. .+..+|.+|+-||++.
T Consensus 151 D~ld~~~~lq~~K~~~~~vf~sppwgg 177 (263)
T KOG2730 151 DFLDLASKLKADKIKYDCVFLSPPWGG 177 (263)
T ss_pred HHHHHHHHHHHHHHEEEEEECCCCCCC
T ss_conf 099999988641010456616999999
No 63
>KOG1500 consensus
Probab=98.93 E-value=5.8e-10 Score=79.97 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=81.6
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64558967861100122210011016873301110001235667642001332210022344566542100344443101
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
-.++.|+.|||.+||||.+++-|.--||++|++||.+.-| +.+++-++.+++.+++.+|.+.+.+. ...++.|+|.
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA-qyA~~Lv~~N~~~~rItVI~GKiEdi---eLPEk~DviI 248 (517)
T KOG1500 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA-QYARKLVASNNLADRITVIPGKIEDI---ELPEKVDVII 248 (517)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHHHCCCCCCEEEECCCCCCEE---CCCCCCCEEE
T ss_conf 3345774899815882489999987386538987456799-99999874366320378705632010---3751034787
Q ss_pred CCHHHHHC-CHHHHHH-HHHHCCCCCCCEEEEE
Q ss_conf 51343100-0288898-8874488889749999
Q gi|254780405|r 124 LDPPYGQG-LAQQALA-IIDKEGWLEPNALVII 154 (189)
Q Consensus 124 ~DPPY~~~-~~~~~l~-~l~~~~~L~~~gliii 154 (189)
..|- +.- ..+..|+ .+...+||+|+|.++-
T Consensus 249 SEPM-G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500 249 SEPM-GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ECCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2562-1411108889999999874287774467
No 64
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=98.92 E-value=1.4e-09 Score=77.79 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHH---HHHCCCCCCCCCEEEECCCCCCCCHHHHH-C-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 677858999999987---76333645589678611001222100110-1-687330111000123566764200133221
Q gi|254780405|r 24 IRPSDSRTKKALFDI---LTHVYPVFLDSTRMLNIFAGTGSVGFEAL-S-RGCHYVLFVDNNSESIRLIRRNSELLGVEK 98 (189)
Q Consensus 24 ~RPt~~~vrealFni---L~~~~~~~~~~~~vlDlfaGsG~lgiEal-S-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~ 98 (189)
.+|.+..-|--=.-+ +........++.++||.+||||.=||--+ - -|+.+|++.|.|+.|++.+++|++.+++++
T Consensus 22 YNP~~~~NRDlsvl~i~~~~~~~~~~~~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~ 101 (375)
T pfam02005 22 YNPRMEFNRDLSVTVIRQLNLLHKKLGRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVEN 101 (375)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 58501023219999999999864302588669754675419999999746998669995599899999999888659987
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH--CCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEC
Q ss_conf 00223445665421003444431015134310--0028889888744888897499998177888675788579998341
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ--GLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKY 176 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~--~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~y 176 (189)
.+++.+.|+..++.. ....||+|-+|| |+. ...+..+.. ++.+|++.+-.. +...+.......--|+|
T Consensus 102 ~~~~~~~DAn~lm~~-~~~~fD~IDlDP-fGSp~pfldsAi~a------v~~~GlL~vTaT--D~a~L~G~~~~~~~r~Y 171 (375)
T pfam02005 102 IVVINGDDANMLMRE-NHRRFDVIDLDP-FGSPAPFLDSAVQS------VKRGGLLCVTAT--DTAVLCGAYPEACLRKY 171 (375)
T ss_pred EEEECHHHHHHHHHH-CCCCCCEEEECC-CCCCCHHHHHHHHH------HCCCCEEEEEEC--CCHHHCCCCCHHHHHHC
T ss_conf 378754759999985-588675686789-99921779999998------315988999944--63353178825789871
Q ss_pred CCEE
Q ss_conf 8569
Q gi|254780405|r 177 GDTK 180 (189)
Q Consensus 177 G~t~ 180 (189)
|..-
T Consensus 172 ga~~ 175 (375)
T pfam02005 172 GAVP 175 (375)
T ss_pred CCEE
T ss_conf 9973
No 65
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=1.5e-09 Score=77.49 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 899999998776333645589678611001222100110-1687330111000123566764200133221002234456
Q gi|254780405|r 29 SRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEAL-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 29 ~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEal-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
-.-|.++..+++.. .|.+|||++||||-+++... +-|..+|+.+|.+...++.+++-+...+..+ ++.+.+||
T Consensus 37 ~~Wr~~~i~~~~~~-----~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA 110 (238)
T COG2226 37 RLWRRALISLLGIK-----PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA 110 (238)
T ss_pred HHHHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCC-EEEEEECH
T ss_conf 99999999860789-----9987999668731999999996588449999799999999998743247663-27997056
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEE-EECCCCC
Q ss_conf 65421003444431015134310002888988874-48888974999-9817788
Q gi|254780405|r 108 LRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVI-IEEYAGT 160 (189)
Q Consensus 108 ~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~glii-iE~~~~~ 160 (189)
.++. .....||++.+. |+.....+.-..|.+ .+.|+|+|.++ +|.+...
T Consensus 111 e~LP--f~D~sFD~vt~~--fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 111 ENLP--FPDNSFDAVTIS--FGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHCC--CCCCCCCEEEEE--EHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 5498--888765889865--12352787899999998762687499998768998
No 66
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=98.88 E-value=1.6e-09 Score=77.41 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=80.6
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHH-H-HHHCCCCCCC
Q ss_conf 4558967861100122210011016-87330111000123566764200133-22100223445665-4-2100344443
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLG-VEKNCNIFFRDVLR-L-GKIGNISPFQ 120 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~-~~~~~~ii~~D~~~-~-~~~~~~~~fD 120 (189)
..+++++||+|+||+|..||-+... ++.+|++-|. ++++..+++|++.+. ..+++++...|--+ + .......+||
T Consensus 41 ~~~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD 119 (171)
T pfam10294 41 NNLSGKNVLELGSGCGLVGIAVALLLPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVD 119 (171)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCC
T ss_conf 340687678705665758999998579858996383-7899999999997057899669998110898843331467767
Q ss_pred CCCC-CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 1015-134310002888988874488889749999817788
Q gi|254780405|r 121 LVYL-DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 121 iIf~-DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
+|+. |.=|.....+.++..+.. +++++|.+++-+..+.
T Consensus 120 ~Il~sD~iY~~~~~~~L~~ti~~--ll~~~g~~lla~~~R~ 158 (171)
T pfam10294 120 LILAADCVYNEDAFPLLVKTLKD--LLGKETVILVAYKKRR 158 (171)
T ss_pred EEEEECEEECHHHHHHHHHHHHH--HHCCCCEEEEEECCCC
T ss_conf 89971213357779999999999--9589989999978206
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.86 E-value=2.9e-09 Score=75.80 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100122210011016--87330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.+.+||||+||||.++-+...| || +|+.||.|++.++.++++.. ++++..+|+.++. ..++||+||.+
T Consensus 31 ~~~~vlDlGCG~G~~t~~l~~r~p~a-~v~GiD~S~~Ml~~Ar~~~~------~~~f~~~D~~~~~---~~~~~D~ifSN 100 (252)
T PRK01683 31 NVEYVADLGCGPGNSTALLHQRWPAA-RITGIDSSPAMLAEARQALP------DCQFVEADIRNWQ---PEQALDLIYAN 100 (252)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHCC------CCEEEECCHHCCC---CCCCCCEEEEE
T ss_conf 99989993774989999999977998-79999898999999997589------9838725042078---76787889561
Q ss_pred HHHHH-CCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 34310-002888988874488889749999817788
Q gi|254780405|r 126 PPYGQ-GLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 126 PPY~~-~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
-=..- .....++..+.. .|+|||.+.+|.+.+.
T Consensus 101 aalhW~~d~~~~~~~~~~--~L~PGG~la~Q~p~n~ 134 (252)
T PRK01683 101 ASLQWLPDHYELFPHLVS--LLAPQGVLAVQMPDNW 134 (252)
T ss_pred EEHHHCCCHHHHHHHHHH--HCCCCCEEEEECCCCC
T ss_conf 004507877999999998--2487879999889875
No 68
>KOG3191 consensus
Probab=98.85 E-value=7.5e-09 Score=73.36 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=93.2
Q ss_pred CCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 967861100122210011016--873301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.+-+++++||||.++-...|+ +-....+.|+|++|+++.++-++.++. ++++++.|...-+.. ++.|++..+|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~---~~VDvLvfNP 118 (209)
T KOG3191 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN---ESVDVLVFNP 118 (209)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCCEEEHHHHHHHCC---CCCCEEEECC
T ss_conf 60589934884659999997417771699954998999887999985577--520565257766332---7730899789
Q ss_pred HHHH------------------CCHHHHHHHHHH--CCCCCCCEEEEEECCCCCCCC------CCCCC--EEEEEEECCC
Q ss_conf 4310------------------002888988874--488889749999817788867------57885--7999834185
Q gi|254780405|r 127 PYGQ------------------GLAQQALAIIDK--EGWLEPNALVIIEEYAGTCIS------VGAAF--HFLQERKYGD 178 (189)
Q Consensus 127 PY~~------------------~~~~~~l~~l~~--~~~L~~~gliiiE~~~~~~~~------~~~~~--~~~~~k~yG~ 178 (189)
||-- .....+++.+.. ..+|.+.|+.|+--.+...+. ...+| .+..+|+.|.
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~ 198 (209)
T KOG3191 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAGG 198 (209)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 96769854420677888874575417899988764044428674377630130597999998743365306888874477
Q ss_pred EEEEEEECC
Q ss_conf 699986507
Q gi|254780405|r 179 TKIYFFSYN 187 (189)
Q Consensus 179 t~i~f~~~n 187 (189)
..++++++.
T Consensus 199 E~l~ilkf~ 207 (209)
T KOG3191 199 ETLSILKFT 207 (209)
T ss_pred CEEEEEEEE
T ss_conf 427899998
No 69
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.85 E-value=2.3e-09 Score=76.39 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=77.1
Q ss_pred CEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH-H
Q ss_conf 67861100122210011016-873301110001235667642001332210022344566542100344443101513-4
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP-P 127 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP-P 127 (189)
++|||++||+|...+....+ +..+|+.+|+++..++.+++.++..++.+++++..+|+.+. +.. ..||+|+.-= =
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~l-pf~--d~FD~V~s~evl 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFP--DTYDLVFGFEVI 77 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCC-CCC--CCCCEEEHHHHH
T ss_conf 90899836688889999997799889999799999999999999729986514785211039-999--983567685357
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3100028889888744888897499998
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+.......++..+. ..|+|||.+++-
T Consensus 78 ~Hi~D~~~~l~ei~--RvLKPGG~lvia 103 (224)
T smart00828 78 HHIKDKMDLFSNIS--RHLKDGGHLVLA 103 (224)
T ss_pred HCCCCHHHHHHHHH--HHCCCCEEEEEE
T ss_conf 65399999999999--871798499999
No 70
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.5e-09 Score=77.51 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 58967861100122210011016--87-3301110001235667642001332210022344566542100344443101
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
..|++|+|.+.|||+|+. +|+| |. .+|+.+|+..+.++.+++|++..++.+++++..+|+.+.... +.||.||
T Consensus 93 ~pg~rVlEAGtGSG~lt~-~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---~~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTA-YLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---EDVDAVF 168 (256)
T ss_pred CCCCEEEECCCCCHHHHH-HHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---CCCCEEE
T ss_conf 988789981568059999-999964888459999952789999999999842456137870540002465---5467799
Q ss_pred CCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 513431000288898887448888974999981
Q gi|254780405|r 124 LDPPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 124 ~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
+|-| .-.+.++.+.+ .|+++|.+++-.
T Consensus 169 LDmp----~PW~~le~~~~--~Lkpgg~~~~y~ 195 (256)
T COG2519 169 LDLP----DPWNVLEHVSD--ALKPGGVVVVYS 195 (256)
T ss_pred ECCC----CHHHHHHHHHH--HHCCCCEEEEEC
T ss_conf 7589----84899999998--717996799983
No 71
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=98.80 E-value=2.8e-09 Score=75.91 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=81.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCC-----------CCHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHH
Q ss_conf 896786110012221001101687-----------330111000123566764200133---221002234456654210
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGC-----------HYVLFVDNNSESIRLIRRNSELLG---VEKNCNIFFRDVLRLGKI 113 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA-----------~~v~~vE~~~~a~~~lk~N~~~~~---~~~~~~ii~~D~~~~~~~ 113 (189)
.+.++||++||||=++++ ++|-+ .+||.+|.|++.+++.++=.+..+ ...+++.+++||.++ +
T Consensus 43 ~~~~~LDvA~GTGD~a~~-~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~L-P- 119 (242)
T TIGR01934 43 KGQKVLDVACGTGDLAIE-LAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEAL-P- 119 (242)
T ss_pred CCCCEEEEECCHHHHHHH-HHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCC-C-
T ss_conf 889778872383999999-9863575553357763378987079889999987413420033321642110005508-7-
Q ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEE-EECCCCCC
Q ss_conf 03444431015134310002888988874-48888974999-98177888
Q gi|254780405|r 114 GNISPFQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVI-IEEYAGTC 161 (189)
Q Consensus 114 ~~~~~fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~glii-iE~~~~~~ 161 (189)
..+..||.+=+= |+--+..+..+.|.+ .+.|||+|.++ +|-+....
T Consensus 120 F~D~sFD~~Tia--FGlRN~~d~~~aL~E~~RVLKpgG~l~iLEf~~P~~ 167 (242)
T TIGR01934 120 FEDNSFDAVTIA--FGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPAN 167 (242)
T ss_pred CCCCCEEEEEEE--CCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 998624446640--255474686789877311018898799840786764
No 72
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=6.2e-09 Score=73.87 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCCEEEECCCCCCCCHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 5896786110012221001--10168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFE--ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiE--alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
-.|.+|||+|||-|.=+.- .+..++ .|+++|.++..++.+++|++.+++. +.+...|+..........+||.|++
T Consensus 244 ~~g~~VLD~CAaPGGKt~~la~~~~~~-~v~A~D~~~~Rl~~l~~n~~Rlg~~--~~v~~~d~~~~~~~~~~~~fD~ILl 320 (428)
T PRK10901 244 QNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILL 320 (428)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHCCCCCCCEEEE
T ss_conf 889879871688766899999964589-2899969888999999999975997--3999776557233134456787997
Q ss_pred CHHHH----------------HCCHHH---HH-HHHHH-CCCCCCCEEEEEE
Q ss_conf 13431----------------000288---89-88874-4888897499998
Q gi|254780405|r 125 DPPYG----------------QGLAQQ---AL-AIIDK-EGWLEPNALVIIE 155 (189)
Q Consensus 125 DPPY~----------------~~~~~~---~l-~~l~~-~~~L~~~gliiiE 155 (189)
|+|=. .+...+ +- ++|.. ..++++||.++.-
T Consensus 321 DaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYs 372 (428)
T PRK10901 321 DAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYA 372 (428)
T ss_pred CCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 5898887244468542112899999999999999999999866889889999
No 73
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=98.72 E-value=2.8e-08 Score=70.00 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=88.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88886778589999999877633364558967861100122210011016873301110001235667642001332210
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
|.-++-||-+-|+|+. . .+...++|||+||.|.=++-..++|. .|+++|.++.+++.+++-++.-++ +
T Consensus 11 kky~lt~~HSev~~a~----~-----~i~pgk~LDlgcG~GRNslyLa~~G~-~VtavD~n~~aL~~l~~ia~~e~l--~ 78 (192)
T pfam03848 11 KKYNTTPTHSEVLEAV----K-----TVKPGKALDLGCGQGRNSLFLSLLGY-DVTAVDHNENSIANLQDIKEKENL--D 78 (192)
T ss_pred HHCCCCCCCHHHHHHH----H-----HCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--C
T ss_conf 6248998809999998----6-----37997466604789731899986899-179997999999999999997099--7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-------CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 02234456654210034444310-------15134310002888988874488889749999817788
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNISPFQLV-------YLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~~~fDiI-------f~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
++....|+... .-.+.||+| |++|+ ..+.++..+.+ ..++||...+++...+
T Consensus 79 i~~~~~Din~~---~~~e~YD~IisTVvfmFL~~~----~ip~iI~~mq~--~T~pGGynlIv~am~t 137 (192)
T pfam03848 79 IPTALYDINSA---SIDENYDFILSTVVLMFLQAE----RIPAIIANMQE--HTNVGGYNLIVAAMST 137 (192)
T ss_pred CEEEEECCCCC---CCCCCCCEEEEEEEEEECCHH----HHHHHHHHHHH--HCCCCCEEEEEEEECC
T ss_conf 52687315556---876776879888877731867----87799999998--5289988999976145
No 74
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.71 E-value=2.1e-08 Score=70.79 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999998776333645589678611001222100110168733011100012356676420013322100223445665
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+-+.|...|.. ....++||++||||.++.....+++ .|+.+|.++..+..++++.. ....+++|+..
T Consensus 29 ~~a~~Ll~~l~~-----~~~~~vLDlGcGtG~~t~~l~~~~~-~v~~~Dls~~Ml~~a~~~~~------~~~~~~~D~e~ 96 (251)
T PRK10258 29 QSADALLAMLPQ-----RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHCCC-----CCCCCEEEEEEHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC------CHHHHHCHHHH
T ss_conf 999999973665-----7899399983100278999997499-69999598999999987486------33435360630
Q ss_pred HHHHCCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 42100344443101513431-000288898887448888974999981
Q gi|254780405|r 110 LGKIGNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 110 ~~~~~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
+ +. ....||+|+..-=+. -......+..+ ...|+|+|++++-.
T Consensus 97 L-p~-~~~sfDli~S~~~lqW~~d~~~~l~e~--~rvLkPgG~l~fst 140 (251)
T PRK10258 97 L-PL-ATATFDLAWSNLAVQWCGNLSTALREL--YRVVRPGGVVAFTT 140 (251)
T ss_pred C-CC-CCCCCCEEEECCCHHHCCCHHHHHHHH--HHHCCCCCEEEEEC
T ss_conf 9-99-878821785504045259999999999--96458994999981
No 75
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.70 E-value=2.6e-08 Score=70.19 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=87.4
Q ss_pred EECCEEEECCCCC---CCCCCHHHHHHHH-----------HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC---C
Q ss_conf 1088674437888---8677858999999-----------987763336455896786110012221001101687---3
Q gi|254780405|r 10 KFQRRLLHTPQNR---SIRPSDSRTKKAL-----------FDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC---H 72 (189)
Q Consensus 10 ~~kg~~l~~~~~~---~~RPt~~~vreal-----------FniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA---~ 72 (189)
+-=|-++.+.++. -.|||++.--.++ -+++-.... -.-|++|++-++|||+|+. +|+|-. -
T Consensus 51 k~~Gs~v~ss~g~~~~vl~Pt~e~~t~~mprrtQIiYpkD~s~I~~~ld-i~PG~~VlEaGtGSGsLT~-~Laravgp~G 128 (309)
T pfam08704 51 KRYGSKVSSSKGGFVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLE-LKPGSVVCESGTGSGSLSH-AIARTVAPTG 128 (309)
T ss_pred CCCCCEEEECCCCEEEEECCCHHHHHHCCCCCCCEECCCCHHHHHHHHC-CCCCCEEEEECCCCCHHHH-HHHHHHCCCC
T ss_conf 9997589938995799978999999844888773255600999999809-8999999983678429999-9999748886
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 3011100012356676420013322100223445665-42100344443101513431000288898887448888-974
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLE-PNA 150 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~-~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~-~~g 150 (189)
+|+.+|...+.++.+++|++..++.+++++...|+-+ -........+|-||+|-|= -...++.+.+ .|+ ++|
T Consensus 129 ~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~VfLDlp~----PW~ai~~~~~--~Lk~~Gg 202 (309)
T pfam08704 129 HLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDLPA----PWEAIPHAAK--ALKVEGG 202 (309)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEECCCC----HHHHHHHHHH--HHCCCCC
T ss_conf 599984478999999999987498750588985200136664456643589975899----7998899998--6068996
Q ss_pred EEE
Q ss_conf 999
Q gi|254780405|r 151 LVI 153 (189)
Q Consensus 151 lii 153 (189)
.+.
T Consensus 203 ~l~ 205 (309)
T pfam08704 203 RLC 205 (309)
T ss_pred EEE
T ss_conf 899
No 76
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.70 E-value=2.9e-08 Score=69.86 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 55896786110012221001101687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
++.|++|||.+||-|.++.-....|| .|+++|.++++++.++..+...++. ++.-+..++++.... ++||+|.+-
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~--~~FDvV~cm 131 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG--GQFDVVTCM 131 (243)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHCC--CCCCEEEEH
T ss_conf 77777088745883286499997799-4697438767789998754424632--252233299997248--974489773
Q ss_pred HHH-HHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 343-100028889888744888897499998
Q gi|254780405|r 126 PPY-GQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 126 PPY-~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
=-- .....+..+..+. ++++|+|++++-
T Consensus 132 EVlEHv~dp~~~~~~c~--~lvkP~G~lf~S 160 (243)
T COG2227 132 EVLEHVPDPESFLRACA--KLVKPGGILFLS 160 (243)
T ss_pred HHHHCCCCHHHHHHHHH--HHCCCCCEEEEE
T ss_conf 58771699999999999--862999289994
No 77
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.69 E-value=3.3e-09 Score=75.52 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHH--HHCCCCCC-C-CCEEEECCCCCCCCHHHHHC----------CC---C-------------------
Q ss_conf 589999999877--63336455-8-96786110012221001101----------68---7-------------------
Q gi|254780405|r 28 DSRTKKALFDIL--THVYPVFL-D-STRMLNIFAGTGSVGFEALS----------RG---C------------------- 71 (189)
Q Consensus 28 ~~~vrealFniL--~~~~~~~~-~-~~~vlDlfaGsG~lgiEalS----------rG---A------------------- 71 (189)
..=+||.|---| ...++... + +..++|.+||||.+-|||+. |- .
T Consensus 170 ~APLKEnLAAalL~~sgW~~~~~~~~~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~ 249 (716)
T PRK11783 170 EAPLKENLAAAILLRSGWPEIAAQGGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQ 249 (716)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 78876699999999749963345799813446668437899999998477988654545641156889999999999999
Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf -----------3301110001235667642001332210022344566542100344443101513431000
Q gi|254780405|r 72 -----------HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 72 -----------~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
.+++..|+|+++++.++.|++..++++.+++.++|+.++.........-+|.++|||++-+
T Consensus 250 ~r~~~~~~~~~~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERL 321 (716)
T PRK11783 250 ERARAGLAECSPKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL 321 (716)
T ss_pred HHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCC
T ss_conf 865422346887189995998999999999998199886299956789857987778982899678522013
No 78
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=98.69 E-value=2e-08 Score=70.79 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=80.9
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 8967861100122210011016-873301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.|.+|||++||-|++++.|..+ |+ +|+.|-++++-.+.+++.++..++++++++...|...+ ..+||-|..==
T Consensus 62 ~g~~vLDiGCGWG~~a~~~a~~~g~-~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~-----~~~fD~IvSie 135 (273)
T pfam02353 62 PGMTLLDIGCGWGGLMRRAAERYDV-NVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF-----DEPFDRIVSVG 135 (273)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC-----CCCCCEEEEEH
T ss_conf 9998999788808999999984795-18999797899999999998708743212000626547-----66666677651
Q ss_pred HH---HHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 43---1000288898887448888974999981
Q gi|254780405|r 127 PY---GQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 127 PY---~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
-+ +...+...++.+.. +|+|+|+++++.
T Consensus 136 m~Ehvg~~~~~~~f~~i~~--~LkpgG~~~iq~ 166 (273)
T pfam02353 136 MFEHVGHENYDTFFKKLYN--LLPPGGLMLLHT 166 (273)
T ss_pred HHHHCCHHHHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 6876287779999999998--658897399999
No 79
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.68 E-value=7.3e-09 Score=73.46 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=76.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100122210011016-8-7330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.|-+||||+||+|...+.|..+ | ..+|+.||++++.+..+++|++..++. |+++.++|+..+ + .....||+|+.+
T Consensus 73 pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~-NVeF~~Gdae~L-P-l~D~SfDvViSn 149 (258)
T PRK11873 73 PGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-VADGSVDVIISN 149 (258)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CEEEEEECCCCC-C-CCCCCEEEEEEC
T ss_conf 9998999478877759999998699977999859999999999999975997-559999555313-6-898835199882
Q ss_pred HHHHHCC---HHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3431000---28889888744888897499998
Q gi|254780405|r 126 PPYGQGL---AQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 126 PPY~~~~---~~~~l~~l~~~~~L~~~gliiiE 155 (189)
= -.++ -...+.-+ ...|||+|.+++.
T Consensus 150 c--Vlnl~pDk~~vl~E~--~RVLKPGGRl~IS 178 (258)
T PRK11873 150 C--VINLSPDKERVFREA--FRVLKPGGRFAIS 178 (258)
T ss_pred C--EEECCCCHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 4--676079879999999--9962889789999
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=98.67 E-value=8.8e-08 Score=67.03 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHC----CCCCCCCHHHHHH
Q ss_conf 99999987763336455896786110012221001101687-330111000123566764200----1332210022344
Q gi|254780405|r 31 TKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSE----LLGVEKNCNIFFR 105 (189)
Q Consensus 31 vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~----~~~~~~~~~ii~~ 105 (189)
+.-.|-++|....+..+..++|||++||||.++=...++.. .+++++|+.......+++... ..+ ..++.++++
T Consensus 19 ~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~-~~~~~f~~g 97 (272)
T TIGR02072 19 MAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKN-LKAVQFICG 97 (272)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCC-CHHHHHHHH
T ss_conf 9999999887407654455435651268548999999868800123333256789999974467886576-045666663
Q ss_pred HHHHHHHHCCCCC--CCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 5665421003444--43101513431-000288898887448888974999981
Q gi|254780405|r 106 DVLRLGKIGNISP--FQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 106 D~~~~~~~~~~~~--fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
|+.++.- .... ||+|+.+-=.. -+....++..+.. +|+++|++++-.
T Consensus 98 D~E~l~~--~~~~~~~DLI~Sn~a~QW~~~~~~~l~~l~~--~lk~gG~l~FSt 147 (272)
T TIGR02072 98 DIEKLPL--EDSSFKFDLIVSNLALQWCDDLSQALSELAR--VLKPGGLLAFST 147 (272)
T ss_pred HHHHCCC--CCCCCEEEHHHHHHHHHHCCCHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 7771788--7663034127563588710478899999997--528796899861
No 81
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.66 E-value=8.4e-08 Score=67.17 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 86778589999999877633364558967861100122210011016873301110001235667642001332210022
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
..-||.+-|.|++ . .+...++|||+||.|.-++-..++|. .|+++|.|+.++..+++-+..-+++ +++.
T Consensus 14 ~~~~~hs~~~~~~----~-----~~~~g~~LDlgcG~Grna~~La~~G~-~VtavD~s~~al~~~~~~a~~~~l~-~v~~ 82 (198)
T PRK11207 14 GLTRTHSEVLEAV----K-----VVKPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPMSIANLERIKAAENLD-NLHT 82 (198)
T ss_pred CCCCCCHHHHHHH----C-----CCCCCCEEEECCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 8899978999873----3-----58997477724788786999986898-5999979999999999999875998-2465
Q ss_pred HHHHHHHHHHHCCCCCCCCC-------CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 34456654210034444310-------151343100028889888744888897499998
Q gi|254780405|r 103 FFRDVLRLGKIGNISPFQLV-------YLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 103 i~~D~~~~~~~~~~~~fDiI-------f~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
...|...+ ....+||+| |++|+. .+.++..+.+ .++|||...+.
T Consensus 83 ~~~Dl~~~---~~~~~yDlIlstvv~~fl~p~~----~p~iia~mq~--~t~PGG~~LIV 133 (198)
T PRK11207 83 RVVDLNNL---TFDGEYDFILSTVVLMFLEAKT----IPGLIANMQR--CTKPGGYNLIV 133 (198)
T ss_pred EEECCCCC---CCCCCCCEEEEEEEEEECCHHH----HHHHHHHHHH--HCCCCCEEEEE
T ss_conf 62031238---8777705897864521048667----8999999999--60899489999
No 82
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.2e-08 Score=70.61 Aligned_cols=140 Identities=20% Similarity=0.328 Sum_probs=89.4
Q ss_pred CCCEEEEEEEECCEEEECCCCCC---------CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH-HCCC
Q ss_conf 97019986410886744378888---------6778589999999877633364558967861100122210011-0168
Q gi|254780405|r 1 MNKIRIIGGKFQRRLLHTPQNRS---------IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEA-LSRG 70 (189)
Q Consensus 1 ~~~mrii~G~~kg~~l~~~~~~~---------~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEa-lSrG 70 (189)
|..|.+.-|. .++.+|+... .-|.+..-|-----.|.. +. .....+++|-+||||.=||-. +--|
T Consensus 1 ~~~~~v~EG~---~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~-~~-~~~~~~v~DalsatGiRgIRya~E~~ 75 (380)
T COG1867 1 MELMEVKEGS---AKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKA-FG-KLLPKRVLDALSATGIRGIRYAVETG 75 (380)
T ss_pred CCEEEEECCC---EEEECCCCCCCCCCCCCCEECCHHHHCCCHHHHHHHH-HH-CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9237853372---5797078777888778602280466364266899998-60-34773886435553366754534257
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH--CCHHHHHHHHHHCCCCCC
Q ss_conf 733011100012356676420013322100223445665421003444431015134310--002888988874488889
Q gi|254780405|r 71 CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ--GLAQQALAIIDKEGWLEP 148 (189)
Q Consensus 71 A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~--~~~~~~l~~l~~~~~L~~ 148 (189)
..+|++.|+|++|++.+++|++.+..+ +..+++.|+..++.... ..||+|=+|| |+. ...+..+.. ++.
T Consensus 76 ~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~-~~fd~IDiDP-FGSPaPFlDaA~~s------~~~ 146 (380)
T COG1867 76 VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELH-RAFDVIDIDP-FGSPAPFLDAALRS------VRR 146 (380)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCC-CCEEECCHHHHHHHHCC-CCCCEEECCC-CCCCCHHHHHHHHH------HHC
T ss_conf 617997158989999999999834766-63255342899987258-8763781389-99972679999997------222
Q ss_pred CEEEEE
Q ss_conf 749999
Q gi|254780405|r 149 NALVII 154 (189)
Q Consensus 149 ~gliii 154 (189)
+|++-+
T Consensus 147 ~G~l~v 152 (380)
T COG1867 147 GGLLCV 152 (380)
T ss_pred CCEEEE
T ss_conf 988999
No 83
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=98.59 E-value=2.2e-08 Score=70.63 Aligned_cols=94 Identities=21% Similarity=0.153 Sum_probs=67.9
Q ss_pred EECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHC
Q ss_conf 6110012221001101687330111000123566764200133221002234456654210034444310151343-100
Q gi|254780405|r 53 LNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY-GQG 131 (189)
Q Consensus 53 lDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY-~~~ 131 (189)
||++||+|.+......++..+++++|.++.+++.++++... .+++++++|+.++. ....+||+|++---+ ...
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~----~~~~~~~~d~~~~~--~~~~~fD~I~~~~~l~~~~ 74 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQE----DGLTFVVGDAEDLP--FPDESFDVVVSSLVLHHLP 74 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC----CCCEEEEECCCCCC--CCCCCCCEEEECCCHHHCC
T ss_conf 96462499999999845799999994978998776631026----69479980332467--5545685999833066468
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 02888988874488889749999
Q gi|254780405|r 132 LAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 132 ~~~~~l~~l~~~~~L~~~gliii 154 (189)
..+..++.+. ++|+|+|.+++
T Consensus 75 ~~~~~l~~~~--r~LkpgG~l~i 95 (95)
T pfam08241 75 DPERALREIA--RVLKPGGKLVI 95 (95)
T ss_pred CHHHHHHHHH--HHCCCCEEEEC
T ss_conf 9999999999--87786949979
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.59 E-value=2.5e-08 Score=70.23 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+.+|||++||||-.+- .||+=+.+|+.||.++..++.+++|++.+++. |+.++++|...- .....+||.|++.-
T Consensus 78 ~~~~VLeIGtGsGY~tA-lLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~-nv~~~~gdg~~g--~~~~~pfD~Iii~~- 152 (213)
T PRK00312 78 PGDRVLEIGTGSGYQAA-VLAHLVERVFSVERIKTLQWQAKRRLKQLGLH-NVSVRHGDGWKG--WPAYAPFDRILVTA- 152 (213)
T ss_pred CCCEEEEECCCCCHHHH-HHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCCCCC--CCCCCCCCEEEEEE-
T ss_conf 99759996598609999-99986292899942899999999999984998-769996887667--87669724899984-
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 310002888988874488889749999
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
-.+..-+.+.+ -|++||.+++
T Consensus 153 ----a~~~~P~~l~~--qL~~gGrLV~ 173 (213)
T PRK00312 153 ----AAPEIPRALLD--QLAEGGILVA 173 (213)
T ss_pred ----CCHHHHHHHHH--HCCCCCEEEE
T ss_conf ----34122599998--4532979999
No 85
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=98.57 E-value=4.5e-08 Score=68.78 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+-.||+++.|+|+|.-+.+.+ +++|++||+|+..+..+++.+......++++++++|+.+. ...+||.+..+=|
T Consensus 38 ~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~----d~~~~~~vVaNLP 112 (296)
T PTZ00338 38 PTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKT----EFPYFDVCVANVP 112 (296)
T ss_pred CCCEEEEECCCCHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHC----CCCCCCEEEECCC
T ss_conf 8995799668542999999835-8917999948899999999985144566735770505318----5641144663587
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3100028889888744888897499998
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
|. ....++..+....-.-...+++++
T Consensus 113 Y~--ISSpii~kll~~~~~~~~~vlM~Q 138 (296)
T PTZ00338 113 YQ--ISSPLVFKLLSHRPLFRCAVLMFQ 138 (296)
T ss_pred CH--HHHHHHHHHHHCCCCCCCEEEEEH
T ss_conf 04--479999999855985320356540
No 86
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=98.57 E-value=4.5e-08 Score=68.74 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=76.6
Q ss_pred CCCCEEEECCCCCCCCHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 589678611001222100--110168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGF--EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgi--EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
-.|.+|||+|||.|.-+. -++..+...++++|.++..++.+++|++.++.. ++.+...|+.+........+||.|++
T Consensus 83 ~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~~~~~~~d~~~~~~~~~~~~fD~vLv 161 (277)
T pfam01189 83 QEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVF-NIIVQEGDARQIDQKLLGGEFDRILL 161 (277)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 99998988367888169999987589877998379789999999999975997-47999664445574346666657997
Q ss_pred CHHHH-HC-----------CHHHHHH-------HHHH--CCCCCCCEEEEEE
Q ss_conf 13431-00-----------0288898-------8874--4888897499998
Q gi|254780405|r 125 DPPYG-QG-----------LAQQALA-------IIDK--EGWLEPNALVIIE 155 (189)
Q Consensus 125 DPPY~-~~-----------~~~~~l~-------~l~~--~~~L~~~gliiiE 155 (189)
|||=. .+ ...+.+. .|.+ ..+++++|.+++.
T Consensus 162 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYs 213 (277)
T pfam01189 162 DAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYS 213 (277)
T ss_pred CCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 2898898634558531211999999999999999999999971769989999
No 87
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.55 E-value=6.1e-08 Score=68.00 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100122210--01101687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.|-+|||+||.-|.=+ |.++..+-..++++|.++..++.+++|++.+++. ++.+.+.|+..+.+.. ...||.|.+|
T Consensus 113 pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~-n~~vt~~d~~~~~~~~-~~~FD~ILvD 190 (471)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL-PEMFDAILLD 190 (471)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHC-CCCCCEEEEC
T ss_conf 9998999577854899999997589966999838899999999999971998-4799935866740323-0106679987
Q ss_pred HHHH-HC-----------CHHHHH-------HHHH--HCCCCCCCEEEEE
Q ss_conf 3431-00-----------028889-------8887--4488889749999
Q gi|254780405|r 126 PPYG-QG-----------LAQQAL-------AIID--KEGWLEPNALVII 154 (189)
Q Consensus 126 PPY~-~~-----------~~~~~l-------~~l~--~~~~L~~~gliii 154 (189)
+|=. .+ ...+.+ ..|. ...+|+|||.++.
T Consensus 191 aPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVY 240 (471)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVY 240 (471)
T ss_pred CCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88888733555975764189879999999999999999987388968999
No 88
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.55 E-value=7.8e-08 Score=67.34 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 58999999987763336455896786110012221001101687330111000123566764200133221002234456
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
.+.+...+...+.. .++-.+|++|.|.|+|+.+.|.++.+.|++||+|+..++.+++.... ....+.+++.+|+
T Consensus 14 D~~~~~~Iv~~~~~-----~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~~-~~~~~~~~i~~Da 87 (277)
T TIGR00755 14 DESVIQKIVEAANV-----LENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLSE-KLYENLEVIEGDA 87 (277)
T ss_pred CHHHHHHHHHHHCC-----CCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCC-CCCCCEEEEECCE
T ss_conf 87899999997437-----89977999738820789999982598489997267899998752154-3324257871444
Q ss_pred HHHHHHCCCCCCC-----CCCCCHHHHHCCHHHHHHHHH-HC-CCCCCCEEEEEE
Q ss_conf 6542100344443-----101513431000288898887-44-888897499998
Q gi|254780405|r 108 LRLGKIGNISPFQ-----LVYLDPPYGQGLAQQALAIID-KE-GWLEPNALVIIE 155 (189)
Q Consensus 108 ~~~~~~~~~~~fD-----iIf~DPPY~~~~~~~~l~~l~-~~-~~L~~~gliiiE 155 (189)
.+.... ....|+ .|+.+=|| +....++..+. +. .--=+..+++++
T Consensus 88 lk~~~~-~~~~~~~~~~~~vv~NLPY--~Issp~~~~Ll~~~~~~~~~~~vlM~Q 139 (277)
T TIGR00755 88 LKVDLN-SLEDFPKEDKLKVVSNLPY--NISSPLIFKLLKEEEKPKFRLAVLMVQ 139 (277)
T ss_pred EEECCC-HHHHCCCCCCCEEEEECCC--CHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 541232-0433167898579850774--324899999998613644477788742
No 89
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=5.2e-08 Score=68.40 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+-++|++++|.|++..+.+.|++ +|++||+|+..+..+++-.. ..++.+++++|+.++.-. ...+++.|+.+-|
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~-~l~~~~~vVaNlP 104 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP-SLAQPYKVVANLP 104 (259)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHC---CCCCEEEEECCHHCCCCH-HHCCCCEEEECCC
T ss_conf 998699978987788999996069-57999968899999997506---566559994724247513-5157888998089
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3100028889888744888897499998
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
| +....++..+......-...+++++
T Consensus 105 Y--~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 105 Y--NISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred C--CCCHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 7--6567999999846676542899829
No 90
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.53 E-value=2.4e-08 Score=70.39 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 896786110012221001101687---33011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGC---HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA---~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+-+|||++||||-.+. .||+-+ .+|+.+|.++..++.+++|++.+++. |++++++|...-. ....+||.|++
T Consensus 73 ~g~~VLeIGtGsGY~tA-lLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~-nV~~~~gdg~~g~--~~~apfD~Iiv 148 (205)
T pfam01135 73 PGMRVLEIGSGSGYLTA-CFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLE-NVIVVVGDGRQGW--PEFAPYDAIHV 148 (205)
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCC--CCCCCCCEEEE
T ss_conf 99989996699659999-99998387876999835899999999999984888-6589845645588--33398058999
Q ss_pred CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 1343100028889888744888897499998
Q gi|254780405|r 125 DPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 125 DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
.- -.+...+.+.+ -|+++|.+++-
T Consensus 149 ~a-----a~~~iP~~l~~--qL~~gGrLv~p 172 (205)
T pfam01135 149 GA-----AAPEIPEALID--QLKEGGRLVIP 172 (205)
T ss_pred EE-----ECCCCCHHHHH--HCCCCCEEEEE
T ss_conf 75-----06768899999--62879789999
No 91
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=3.4e-08 Score=69.49 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCCHHH-H-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 896786110012221001-1-01687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE-A-LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE-a-lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.+.+|||++||||-.+-= | +..-+.+|+.||.+++.++.+++|++.++..+.+++.++|...-. ....+||.|++.
T Consensus 72 ~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~--~~~apfD~Iiv~ 149 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL--EKHAPFDAIIVT 149 (205)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CCCCCCCEEEEE
T ss_conf 999899978985199999999837477179995369999999999998598633067976556577--434980489998
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 343100028889888744888897499998
Q gi|254780405|r 126 PPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 126 PPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
. -.+..-+.+.+ -|++||.+++=
T Consensus 150 a-----a~~~iP~~l~~--QL~~gGrLV~P 172 (205)
T PRK13944 150 A-----AASTIPSALVR--QLKDGGVLVIP 172 (205)
T ss_pred E-----ECCCCCHHHHH--HCCCCCEEEEE
T ss_conf 5-----07768999998--54879799999
No 92
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=98.53 E-value=9.2e-08 Score=66.91 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=81.9
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCC--C-CCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8967861100122210011016-87330111000123566764200133--2-210022344566542100344443101
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLG--V-EKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~--~-~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
+.++||=++.|.|...=|.|.. +.++|+.||+|++.++.+++.+..++ + ..+++++.+|+.++++... .+||+|+
T Consensus 75 ~pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~-~~yDvII 153 (240)
T pfam01564 75 NPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYL-VKFDVII 153 (240)
T ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCC-CCCCEEE
T ss_conf 855367645865799999856799538999757889999999987985243479855999816899998572-5445899
Q ss_pred CCHHHHH----CCH-HHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 5134310----002-8889888744888897499998177
Q gi|254780405|r 124 LDPPYGQ----GLA-QQALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 124 ~DPPY~~----~~~-~~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
+|.|=.. +++ .+..+.+. +.|+++|+++.+..+
T Consensus 154 ~D~~DP~~~~~~Lfs~eFy~~~~--~~L~~~Gi~v~Q~~s 191 (240)
T pfam01564 154 VDSTDPVGPAENLFSKEFYDLLK--RALKEDGVFVTQAES 191 (240)
T ss_pred EECCCCCCHHHHHHHHHHHHHHH--HHCCCCCEEEEECCC
T ss_conf 95899765334442299999999--865999789992488
No 93
>PRK03612 spermidine synthase; Provisional
Probab=98.51 E-value=1.3e-07 Score=66.04 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=80.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHH--HCCCCC----CCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8967861100122210011016-873301110001235667642--001332----210022344566542100344443
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRN--SELLGV----EKNCNIFFRDVLRLGKIGNISPFQ 120 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N--~~~~~~----~~~~~ii~~D~~~~~~~~~~~~fD 120 (189)
+-++||=++.|.|.-.=|.|.. +.++|+.||+|++.++.++++ +..++. +.+++++.+|+++|++... ++||
T Consensus 293 ~p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~-~~yD 371 (516)
T PRK03612 293 RARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLP-ETFD 371 (516)
T ss_pred CCCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCC-CCCC
T ss_conf 977389983776087999864899663789951889999998572144441232349964898537899998688-8788
Q ss_pred CCCCCHHH--HH---CCHH-HHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 10151343--10---0028-889888744888897499998177
Q gi|254780405|r 121 LVYLDPPY--GQ---GLAQ-QALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 121 iIf~DPPY--~~---~~~~-~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
+|.+|+|= +. .++. +....+. +.|+++|+++++..+
T Consensus 372 vIi~D~pdP~~~~~~~LYs~eFY~~~~--~~L~~~G~~v~qs~S 413 (516)
T PRK03612 372 AIIVDLPDPSNPALGKLYSVEFYRLLK--RRLAPDGLLVVQSTS 413 (516)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHH--HHCCCCCEEEEECCC
T ss_conf 899818997995224675399999999--844999589993689
No 94
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.3e-07 Score=66.04 Aligned_cols=108 Identities=22% Similarity=0.358 Sum_probs=75.2
Q ss_pred CCCCEEEECCCCCCCCH--HHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 58967861100122210--0110168-733011100012356676420013322100223445665421003-4444310
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVG--FEALSRG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN-ISPFQLV 122 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lg--iEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~-~~~fDiI 122 (189)
-.|..|||+||+-|.=+ |-+++.+ ...|+++|.+++.++.+++|++.+++.+ +.+++.|+..+..... ..+||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 9979688807999769999999668998769974498789999999999719983-489951330143113455777859
Q ss_pred CCCHHHH-HC-----------CHHHH--------HHHHH-HCCCCCCCEEEEEE
Q ss_conf 1513431-00-----------02888--------98887-44888897499998
Q gi|254780405|r 123 YLDPPYG-QG-----------LAQQA--------LAIID-KEGWLEPNALVIIE 155 (189)
Q Consensus 123 f~DPPY~-~~-----------~~~~~--------l~~l~-~~~~L~~~gliiiE 155 (189)
++|||=. .+ .-... .++|. ...+++++|.+++-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred EECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 987999877113358123203899999999999999999999844879889999
No 95
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.48 E-value=1.8e-07 Score=65.15 Aligned_cols=105 Identities=18% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCC-CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 455-8967861100122210011016-87330111000123566764200133221002234456654210034444310
Q gi|254780405|r 45 VFL-DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 45 ~~~-~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
.++ .+.+|||++||.|.-++-.+.+ || +|+.+|.++..++.+++-.. ..+++++.++|+.+. ......||+|
T Consensus 48 l~L~~~~kVLDvGCG~GG~a~~LA~~yg~-~V~GiDls~~~~~~A~er~~---~~~~v~f~~~d~~~~--~f~d~sFDvV 121 (263)
T PTZ00098 48 IELDANSKVLDIGSGLGGGCKYINEKYGA-HTHGIDICEKIVNIAKERNQ---DKAKIEFEAKDILKK--DFPENNFDLI 121 (263)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC---CCCCEEEEECCCCCC--CCCCCCEEEE
T ss_conf 48899986888688878899999997498-79998588999999998551---258548996785367--7886745589
Q ss_pred CC-CHHHH--HCCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 15-13431--0002888988874488889749999817
Q gi|254780405|r 123 YL-DPPYG--QGLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 123 f~-DPPY~--~~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
|. |-=-. ...-+.+++.+ .++|||+|.+++...
T Consensus 122 ~S~dailHip~~DK~~l~~e~--~RvLKPGG~llitDw 157 (263)
T PTZ00098 122 YSRDAILHLSLADKKKLFEKC--YKWLKPNGILLITDY 157 (263)
T ss_pred EEEHHHHCCCHHHHHHHHHHH--HHHCCCCCEEEEEEE
T ss_conf 875022308824399999999--998468878999750
No 96
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.45 E-value=6e-08 Score=68.01 Aligned_cols=97 Identities=16% Similarity=0.290 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCCHHHHHCC--C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8967861100122210011016--8-733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR--G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr--G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+-+|||++||||-.+- .|++ | +.+|+.||.++..++.+++|++.++. +|++++++|...- .....+||.|++
T Consensus 76 ~~~~VLeIGtGsGY~tA-lla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~G--~~~~apfD~Iiv 151 (214)
T PRK13942 76 EGQKVLEIGTGSGYHAA-VVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGY-ENVEVILGDGTKG--YEENAPYDRIYV 151 (214)
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCC--CCCCCCCCEEEE
T ss_conf 99979996799529999-9999747678579997179999999999986376-8758985675667--844598127999
Q ss_pred CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 1343100028889888744888897499998
Q gi|254780405|r 125 DPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 125 DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
.. -.+++.+.+.+ -|+++|.+++=
T Consensus 152 ~a-----a~~~iP~~l~~--qL~~gGrLV~P 175 (214)
T PRK13942 152 TA-----AGPDIPKPLLE--QLKDGGIMVIP 175 (214)
T ss_pred EE-----CCCCCCHHHHH--HCCCCCEEEEE
T ss_conf 85-----17657899999--62889589999
No 97
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=98.44 E-value=7.3e-07 Score=61.57 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=99.0
Q ss_pred ECCEEEECCCCCC-CCCCHHHHHHH----HHHHHHHCCCCCCCC-CEEEECCCCCCCCHHHHHC-CC--CCCHHHHHHHH
Q ss_conf 0886744378888-67785899999----998776333645589-6786110012221001101-68--73301110001
Q gi|254780405|r 11 FQRRLLHTPQNRS-IRPSDSRTKKA----LFDILTHVYPVFLDS-TRMLNIFAGTGSVGFEALS-RG--CHYVLFVDNNS 81 (189)
Q Consensus 11 ~kg~~l~~~~~~~-~RPt~~~vrea----lFniL~~~~~~~~~~-~~vlDlfaGsG~lgiEalS-rG--A~~v~~vE~~~ 81 (189)
+.|+.+...+..- -||.++.+-+. .++-+.. .-.- .+++|+++|+|++++.+.. .- -..++++|.++
T Consensus 87 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~ 162 (311)
T TIGR00536 87 FWGLEFFVNEGVLIPRPETEELVEKVLLAALASLLS----QPPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSP 162 (311)
T ss_pred HCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHC----CCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 125102204751125763789999999998875411----4776501110145631566655430466662266411223
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHH------------------------HHH
Q ss_conf 23566764200133221002234456654210034444310151343100028------------------------889
Q gi|254780405|r 82 ESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQ------------------------QAL 137 (189)
Q Consensus 82 ~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~------------------------~~l 137 (189)
.++.++++|++...+.+++.+++.+..+-.......++|++..+|||-..... ..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ppy~~~~~~~~~~~~~~~~~p~~~l~~~g~~g~~~~ 242 (311)
T TIGR00536 163 DALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLLVSNPPYIDEEDLADLSPGVVLFEPLLALVGFGDDGLKIL 242 (311)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 67888887677643201200101124443320366522366458865441345553112343200345430474007899
Q ss_pred HHHH--HCCCCCCCEEEEEECCCCC
Q ss_conf 8887--4488889749999817788
Q gi|254780405|r 138 AIID--KEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 138 ~~l~--~~~~L~~~gliiiE~~~~~ 160 (189)
..+. ...++.++|.+++|+....
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~g~~~ 267 (311)
T TIGR00536 243 KRILELAPDYLKPGGFLLLEIGNWQ 267 (311)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 9998754543056755899616223
No 98
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.4e-08 Score=67.86 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+..||+++||||-.+- .||+=+.+|+.||.+++-++.+++|++.++.. |+.+.++|...- +....+||.|++.-=
T Consensus 72 ~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G--~~~~aPyD~I~Vtaa 147 (209)
T COG2518 72 PGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKG--WPEEAPYDRIIVTAA 147 (209)
T ss_pred CCCEEEEECCCCHHHHH-HHHHHHCEEEEEEECHHHHHHHHHHHHHCCCC-CEEEEECCCCCC--CCCCCCCCEEEEEEC
T ss_conf 99868887778309999-99997484999997199999999999976987-349997885568--877798478999503
Q ss_pred HHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 3100028889888744888897499998
Q gi|254780405|r 128 YGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
....-+.+++. |+++|.+++=
T Consensus 148 -a~~vP~~Ll~Q------L~~gGrlv~P 168 (209)
T COG2518 148 -APEVPEALLDQ------LKPGGRLVIP 168 (209)
T ss_pred -CCCCCHHHHHH------CCCCCEEEEE
T ss_conf -57799899985------0659889999
No 99
>KOG2671 consensus
Probab=98.40 E-value=5.8e-08 Score=68.13 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=62.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH-------HHHHHHCCCCCCCCH-HHHHHHHHHHHHHCCCCC
Q ss_conf 589678611001222100110168733011100012356-------676420013322100-223445665421003444
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIR-------LIRRNSELLGVEKNC-NIFFRDVLRLGKIGNISP 118 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~-------~lk~N~~~~~~~~~~-~ii~~D~~~~~~~~~~~~ 118 (189)
-.|.-|.|-|.|||++=+.|.-=|| .|+.-|+|-..+. .++.|.+..+.+.+. .++.+|..+-. +.....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-~rsn~~ 284 (421)
T KOG2671 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-LRSNLK 284 (421)
T ss_pred CCCCEEECCCCCCCCEEEEHHHHCC-EEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCCCC-HHHCCE
T ss_conf 7998874476566742666223063-56412453120113457774266768774775320320451056763-010323
Q ss_pred CCCCCCCHHHH
Q ss_conf 43101513431
Q gi|254780405|r 119 FQLVYLDPPYG 129 (189)
Q Consensus 119 fDiIf~DPPY~ 129 (189)
||-|.+||||+
T Consensus 285 fDaIvcDPPYG 295 (421)
T KOG2671 285 FDAIVCDPPYG 295 (421)
T ss_pred EEEEEECCCCC
T ss_conf 33787279811
No 100
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=98.33 E-value=2.1e-07 Score=64.75 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=62.5
Q ss_pred EECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-H
Q ss_conf 611001222100110168-73301110001235667642001332210022344566542100344443101513431-0
Q gi|254780405|r 53 LNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYG-Q 130 (189)
Q Consensus 53 lDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~-~ 130 (189)
||++||+|.++...+.+. ..+|+++|.++.+++.+++++...+.. +...+..+...... ....+||+|++---+. .
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~fD~I~~~~vl~~~ 78 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLL-DAVRVRLDVLDAID-LDPGSFDVVVASNVLHHL 78 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCC-CCHHHEEECCCHHH-CCCCCCCEEEECCCHHHC
T ss_conf 9886337999999998789988999859889999999999871345-31110000000222-035898899610417725
Q ss_pred CCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0028889888744888897499
Q gi|254780405|r 131 GLAQQALAIIDKEGWLEPNALV 152 (189)
Q Consensus 131 ~~~~~~l~~l~~~~~L~~~gli 152 (189)
...+..++.+. ++|+|||++
T Consensus 79 ~~~~~~l~~~~--r~LkpgG~l 98 (98)
T pfam08242 79 ADPRAVLRNLR--RLLKPGGVL 98 (98)
T ss_pred CCHHHHHHHHH--HHCCCCCCC
T ss_conf 89999999999--974999899
No 101
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.32 E-value=3.5e-07 Score=63.49 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 85899999998776333645589678611001222100110168733011100012356676420013322100223445
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
..|--|-|+|--.-.+ .-...+.||+||||.++.-|.. -|++|++||+||+....+++|+...+. ++++++.+|
T Consensus 15 L~D~eRlavF~~ai~~----va~d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gD 88 (252)
T COG4076 15 LRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGD 88 (252)
T ss_pred HHHHHHHHHHHHHHHH----HHHHCEEECCCCCCHHHHHHHH-HHCEEEEEECCCHHHHHHHHCCCCCCC-CCEEEEECC
T ss_conf 6668999999999999----8641056346886328898875-320278874180787776505777887-646898055
Q ss_pred HHHHHHHCCCCCCCCCCC
Q ss_conf 665421003444431015
Q gi|254780405|r 107 VLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 107 ~~~~~~~~~~~~fDiIf~ 124 (189)
+..+. -++.|+|.+
T Consensus 89 A~~y~----fe~ADvvic 102 (252)
T COG4076 89 ARDYD----FENADVVIC 102 (252)
T ss_pred CCCCC----CCCCCEEHH
T ss_conf 32133----234534087
No 102
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.31 E-value=1.8e-06 Score=59.30 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=80.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 88677858999999987763336455896786110012221001101687330111000123566764200133221002
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
-+.-||-+-|++|. . .+..+++|||+||.|-=++-..++|. .|+++|.|+.+++.+++-++.-++ +++
T Consensus 105 Y~lt~tHSev~~a~----~-----~i~pgkaLDLGCG~GRNsLyLa~~Gf-dVTA~D~N~~sl~~L~~ia~~E~L--~i~ 172 (289)
T PRK12335 105 YNLTPTHSEVLEAA----K-----TVKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQASLENLQQIAEKENL--NIR 172 (289)
T ss_pred CCCCCCCHHHHHHH----H-----HCCCCCEEEECCCCCCCHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHCCC--CCC
T ss_conf 38998619999987----5-----26887466604788822788975798-425886899999999999997198--877
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-------CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 234456654210034444310-------15134310002888988874488889749999
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLV-------YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiI-------f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+...|+... ...+.||+| |++| ...+.++..+.+. -++||.=.|
T Consensus 173 ~~~yDIN~a---~l~~~YDfI~STVV~mFL~~----~~ip~iI~nMQ~~--T~~gGyNlI 223 (289)
T PRK12335 173 AGSYDINSA---SLQEEYDFILSTVVLMFLNP----ERIPDIIKNMQEH--TNPGGYNLI 223 (289)
T ss_pred CEEECCCCC---CCCCCCCEEEEEEEEEEECH----HHHHHHHHHHHHH--CCCCCEEEE
T ss_conf 257516666---66777678999678864287----7869999999984--479986899
No 103
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=98.30 E-value=1.5e-07 Score=65.73 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=77.0
Q ss_pred CEEEECCCCCCCCHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---CCCCCCCC
Q ss_conf 678611001222100110----16873301110001235667642001332210022344566542100---34444310
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEAL----SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG---NISPFQLV 122 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEal----SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~---~~~~fDiI 122 (189)
-.++|-+||||.=||-++ -.|.++|++.|++|+|++.|++|++.+.++ |.++++.|+-.++... -...||+|
T Consensus 96 i~~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~-N~~v~n~Da~~~L~~~nkat~~~F~vi 174 (462)
T TIGR00308 96 IEIADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVE-NIEVINEDAAAVLRKRNKATFRKFEVI 174 (462)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHCHHHCCCCCEE
T ss_conf 8999875104088999987446576106775347737889988412324422-765455037999875121123676437
Q ss_pred CCCHHHHH--CCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310--002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQ--GLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~--~~~~~~l~~l~~~~~L~~~gliii 154 (189)
=+|| |+. -..+..+..+. +.||++.+
T Consensus 175 DiDP-FGspAPFvd~A~~~~~-----~~NglL~v 202 (462)
T TIGR00308 175 DIDP-FGSPAPFVDSAIRASA-----KRNGLLLV 202 (462)
T ss_pred EECC-CCCCCCHHHHHHHHHH-----HCCCCEEE
T ss_conf 6478-7797415899999997-----46860440
No 104
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=98.29 E-value=2.2e-07 Score=64.72 Aligned_cols=78 Identities=23% Similarity=0.318 Sum_probs=63.8
Q ss_pred CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6786110012221001101687330111000123566764200133--------22100223445665421003444431
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLG--------VEKNCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~--------~~~~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
.+|+|.-||-|.=++..+|.|+ +|+++|.++-.+..++.-++... +..+.+++++|+.++++.. ...+|+
T Consensus 77 p~VlDATAGLG~DafiLAsLG~-~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~-~~~~Dv 154 (235)
T pfam04445 77 PTVLDATAGLGRDAFVLASLGC-RVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPN-IDQPDV 154 (235)
T ss_pred CEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHC-CCCCCE
T ss_conf 8389878775788999981899-69999788999999999999987481557999962899838879997524-689878
Q ss_pred CCCCHHHH
Q ss_conf 01513431
Q gi|254780405|r 122 VYLDPPYG 129 (189)
Q Consensus 122 If~DPPY~ 129 (189)
||+||-|.
T Consensus 155 IYLDPMFP 162 (235)
T pfam04445 155 VYLDPMYP 162 (235)
T ss_pred EEECCCCC
T ss_conf 99737688
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.28 E-value=8.4e-07 Score=61.22 Aligned_cols=108 Identities=15% Similarity=0.283 Sum_probs=81.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCC---C-CCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8967861100122210011016-87330111000123566764200133---2-21002234456654210034444310
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLG---V-EKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~---~-~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
+-++||=+++|-|...=|+|.. +.++|+.||+|++.++.+++-+..++ . ..+++++.+|+.+|++... ++||+|
T Consensus 78 ~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~-~~yDvI 156 (283)
T PRK00811 78 NPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETE-NSFDVI 156 (283)
T ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCC-CCCCEE
T ss_conf 9774899568747999998427885679999468999999999838863133029715998278999998452-355489
Q ss_pred CCCH--HHH--HCCHH-HHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 1513--431--00028-889888744888897499998177
Q gi|254780405|r 123 YLDP--PYG--QGLAQ-QALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 123 f~DP--PY~--~~~~~-~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
++|- |.+ ..++. +..+.+. +.|+++|+++.+...
T Consensus 157 I~D~tDP~gpa~~Lft~~Fy~~~~--~~L~~~Gi~v~Q~~s 195 (283)
T PRK00811 157 IVDSTDPVGPAEGLFTKEFYENCK--RALKEGGIFVAQSES 195 (283)
T ss_pred EEECCCCCCHHHHHCCHHHHHHHH--HHCCCCCEEEECCCC
T ss_conf 980899886445534599999999--853999589992798
No 106
>KOG1227 consensus
Probab=98.27 E-value=6.7e-07 Score=61.79 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 896786110012221001-1016873301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.+-.++|||||-|-+.+. -.+-||+.|+++|.||.+++.+++|++.++..+++.++.+|...... ....|-|.+--
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrVnLGL 270 (351)
T KOG1227 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRVNLGL 270 (351)
T ss_pred CCCHHHHHHCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC---CCCCHHEEECC
T ss_conf 653012234265448740230057457999945879999999877741157887866510236675---53202036434
Q ss_pred -HHHHCCHHHHHHHHH
Q ss_conf -431000288898887
Q gi|254780405|r 127 -PYGQGLAQQALAIID 141 (189)
Q Consensus 127 -PY~~~~~~~~l~~l~ 141 (189)
|=.++-.....+.|.
T Consensus 271 lPSse~~W~~A~k~Lk 286 (351)
T KOG1227 271 LPSSEQGWPTAIKALK 286 (351)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 5655444288998841
No 107
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=8.4e-07 Score=61.21 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 64558967861100122210011016873301110001235667642001332210022344566542100344443101
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
+..+.|++|||++||||-.+|-|.--||+.|+..|+++.+...++-|++.++. .+.+...|..- ....||++.
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g-----~~~~~Dl~L 147 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG-----SPPAFDLLL 147 (218)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCC--EEEEEECCCCC-----CCCCEEEEE
T ss_conf 63103653244156667088999985037887627884788885306221562--16774313368-----986403898
Q ss_pred C-CHHHHHCCHHHHHHHHH
Q ss_conf 5-13431000288898887
Q gi|254780405|r 124 L-DPPYGQGLAQQALAIID 141 (189)
Q Consensus 124 ~-DPPY~~~~~~~~l~~l~ 141 (189)
+ |==|+......++....
T Consensus 148 agDlfy~~~~a~~l~~~~~ 166 (218)
T COG3897 148 AGDLFYNHTEADRLIPWKD 166 (218)
T ss_pred EECEECCCHHHHHHHHHHH
T ss_conf 5030028358898899999
No 108
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.25 E-value=3.2e-07 Score=63.72 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
++..||++++|.|+++-+.+.++ ++|++||+|+..++.+++..+. .++++++++|+.++.- ... ....|+.+.|
T Consensus 13 ~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~---~~n~~ii~~D~L~~~~-~~~-~~~~iv~NLP 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL-PKL-QPYKVVGNLP 86 (169)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC-CCCCEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC-CCC-CCCEEEECCC
T ss_conf 94979996897029999999731-6353163788999999986410---7977999571112553-115-8736993476
Q ss_pred HHHCCHHHHHHHHHH
Q ss_conf 310002888988874
Q gi|254780405|r 128 YGQGLAQQALAIIDK 142 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~ 142 (189)
|. ....++..+..
T Consensus 87 Y~--Iss~il~~ll~ 99 (169)
T smart00650 87 YN--ISTPILFKLLE 99 (169)
T ss_pred CC--CHHHHHHHHHH
T ss_conf 30--11899999986
No 109
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.24 E-value=3.5e-07 Score=63.48 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=54.6
Q ss_pred EEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 786110012221001101687330111000123566764200133221002234456654210034444310151343
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY 128 (189)
+|+|||||.|.+++..-.-|..-+.++|.|+.|+++.+.|... .++++|+.++.........|+|..-||-
T Consensus 2 ~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~-------~~~~~Di~~~~~~~~~~~vDll~ggpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-------CCCCCCHHHCCCCCCCCCCCEEEECCCC
T ss_conf 5999767807899999986998999996899999999988799-------9525886446532137887889868999
No 110
>KOG1663 consensus
Probab=98.24 E-value=1.3e-06 Score=60.19 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=78.2
Q ss_pred CCCCCEEEECCCCCCCCHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH----HCCCCC
Q ss_conf 5589678611001222100---110168733011100012356676420013322100223445665421----003444
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF---EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK----IGNISP 118 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi---EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~----~~~~~~ 118 (189)
.+..++++|++.-||.-.+ .|++-+. +|+++|.|+.++++..+-.+.-+...+++++.+++.+.+. ......
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663 71 LLNAKRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHCCCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 85873389981212789999997459996-59999618688887599998606330342342525666999985579984
Q ss_pred CCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 4310151343100028889888744888897499998
Q gi|254780405|r 119 FQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 119 fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
||.+|+|. .+..|....+.+ .+++++||+|++-
T Consensus 150 fDfaFvDa--dK~nY~~y~e~~--l~Llr~GGvi~~D 182 (237)
T KOG1663 150 FDFAFVDA--DKDNYSNYYERL--LRLLRVGGVIVVD 182 (237)
T ss_pred EEEEEECC--CHHHHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 25999736--667789999999--8562135389992
No 111
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.23 E-value=1e-06 Score=60.73 Aligned_cols=101 Identities=19% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+..||++++|.|+++-..+.+ ++++++||+|+..++.+++.... ..+++++++|+.++.- ....++ .|+.+-|
T Consensus 30 ~~d~VlEIGPG~G~LT~~L~~~-~~~v~aiE~D~~l~~~L~~~~~~---~~~~~ii~~D~l~~d~-~~~~~~-~vvgNLP 103 (258)
T pfam00398 30 ESDTVLEIGPGKGALTEELAKR-AKQVVAIEIDPRLAKRLQKKLAL---HPNVEVVHQDFLKFSF-PKHEPF-LVVGNIP 103 (258)
T ss_pred CCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC-CCCCCE-EEEECCC
T ss_conf 9997999799623999999961-69479995447799999986442---8977999663010575-457861-6894488
Q ss_pred HHHCCHHHHHHHHHH-CCCCCCCEEEEEEC
Q ss_conf 310002888988874-48888974999981
Q gi|254780405|r 128 YGQGLAQQALAIIDK-EGWLEPNALVIIEE 156 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~-~~~L~~~gliiiE~ 156 (189)
|. ....++..+.. ...--...+++++.
T Consensus 104 Y~--Iss~il~~ll~~~~~~~~~~vlmvQk 131 (258)
T pfam00398 104 YN--ITTPIVKKLLFEPRFGRVKMLLVVQK 131 (258)
T ss_pred CC--CCHHHHHHHHHCCCCCCCEEEEEEEH
T ss_conf 63--41789999997047672048999889
No 112
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=1.1e-06 Score=60.53 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=85.5
Q ss_pred HHHHHHHHHC---CCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999877633---3645589678611001222100110168733011100012356676420013322100223445665
Q gi|254780405|r 33 KALFDILTHV---YPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 33 ealFniL~~~---~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
||=+..+.+. ... -.|.++||++||=|++.+-|..+-..+|+.+..|++..+.+++-+...++++++++.-.|-..
T Consensus 55 eAQ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 55 EAQRAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 9999999999975699-999989874788449999999984997999668999999999999975997660799656210
Q ss_pred HHHHCCCCCCCCCCCCHHH---HHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 4210034444310151343---1000288898887448888974999981
Q gi|254780405|r 110 LGKIGNISPFQLVYLDPPY---GQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 110 ~~~~~~~~~fDiIf~DPPY---~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
+. ++||-|..==-| +...+...++.+.+ +|+|+|.++++.
T Consensus 134 ~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~--~L~~~G~~llh~ 176 (283)
T COG2230 134 FE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYA--LLKPGGRMLLHS 176 (283)
T ss_pred CC-----CCCCEEEEHHHHHHHCCCCHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 32-----43420556006887371028999999996--459996599999
No 113
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=98.20 E-value=6.6e-07 Score=61.84 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-----CC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 999987763336455896786110012221001101-----68----733011100012356676420013322100223
Q gi|254780405|r 33 KALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-----RG----CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 33 ealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-----rG----A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
|.|.+|+- .|++||||+||.|+| |++|- +| -.+...||+|...+-.+-+ .-+.||
T Consensus 5 ~~I~~~Ip-------~GSRVLDLGCGdG~L-L~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~--------RGv~VI 68 (205)
T TIGR02081 5 ELILDLIP-------PGSRVLDLGCGDGEL-LALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVA--------RGVSVI 68 (205)
T ss_pred HHHHHHCC-------CCCEEEEECCCCHHH-HHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHH--------CCCCEE
T ss_conf 88986168-------887364101688789-99999743789888712000102345445999986--------252013
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4456654210034444310151
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~D 125 (189)
++|+.+=|.....+.||+|.+.
T Consensus 69 q~Dld~GL~~F~D~~FD~ViLs 90 (205)
T TIGR02081 69 QGDLDEGLEAFPDKSFDYVILS 90 (205)
T ss_pred CCCCCCCCCCCCCCCCCEEEEC
T ss_conf 0060034011678876625421
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.19 E-value=4.6e-07 Score=62.77 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=69.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8967861100122210011016873---3011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCH---YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~---~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.|.+|||+++|||--+- -|++=+. .|+.||.+++.++-+++|++.++. +++.++++|... -.....+||.|++
T Consensus 75 pg~rVLEIGTGSGYqAA-lLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~-~NV~vv~GDG~~--G~pe~APYD~IIV 150 (317)
T PRK13943 75 KGMRVLEIGGGTGYNAA-VMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYY--GVPEFSPYDVIFV 150 (317)
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCCCC--CCCCCCCCCEEEE
T ss_conf 99868996577438999-9999848787599998679999999999997799-864999799888--8866799778999
Q ss_pred CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 1343100028889888744888897499998
Q gi|254780405|r 125 DPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 125 DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
.-= ....-+.+++. |+++|.+++=
T Consensus 151 TAa-a~~IP~aLldQ------Lk~GGRLViP 174 (317)
T PRK13943 151 TVG-VDEVPETWFTQ------LKEGGRVIVP 174 (317)
T ss_pred EEC-CCCCCHHHHHH------CCCCCEEEEE
T ss_conf 852-76489999996------1859699998
No 115
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=98.16 E-value=3.6e-06 Score=57.44 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5589678611001222100110168733011100012356---6764200133221002234456654210034444310
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIR---LIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~---~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
.++|++|||++||+|-.....+..||+.|+.+|-+.-.+- .+++-+ +.+.++.++-.-+.++.. ...||.|
T Consensus 113 ~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~---~~~~~~~~lPlg~E~lp~---~~~FDtV 186 (315)
T pfam08003 113 PLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLL---GNDQRAHLLPLGIEQLPA---LEAFDTV 186 (315)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC---CCCCCEEEECCCHHHCCC---CCCCCEE
T ss_conf 4268988751778649999862239987998898199999999999970---898756885367654866---3421557
Q ss_pred CCC-HHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 151-3431000288898887448888974999981
Q gi|254780405|r 123 YLD-PPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 123 f~D-PPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
|.= ==|......+-|..|.+ .|+++|-+|+|.
T Consensus 187 FsMGVLYHrrsP~~hL~~Lk~--~L~~gGeLvLET 219 (315)
T pfam08003 187 FSMGVLYHRRSPLDHLLQLKD--QLVKGGELVLET 219 (315)
T ss_pred EEEEEEECCCCHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 765444326898999999998--528797899998
No 116
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=98.15 E-value=1.3e-06 Score=60.14 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCEEEECCCCCCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89678611001222100110-168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEAL-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEal-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.|++|||++||.|++.-... .+|+ .++.||+|++++..+.++ ...++++|+..-+.......||+|.+
T Consensus 13 ~~srVLDlGCG~G~ll~~L~~~k~v-~~~GvEid~~~v~~a~~k--------g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 13 PGSRVLDLGCGDGSLLYLLQEEKQV-DGRGIELDAAGVAECVAK--------GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCC-CEEEECCCHHHHHHHHHC--------CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 9698998368898999999876698-769833899999999864--------79545077445974577678037869
No 117
>PRK04457 spermidine synthase; Provisional
Probab=98.12 E-value=1.8e-06 Score=59.25 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 778589999999877633364558967861100122210011016-8733011100012356676420013322100223
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
++.-+-.|.-+--.|-+ -+-+++|-++-|.|++.=++... -..+++.||+|+..++++++-...-.-..+.+++
T Consensus 48 ~L~l~Ytr~Mm~~LLf~-----p~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~ 122 (262)
T PRK04457 48 ELVLSYSRAMMGFLLFN-----PRPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEII 122 (262)
T ss_pred HHHHHHHHHHHHHHHCC-----CCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 02128899999998658-----9978699992570199999998398675899987889999999865799999726999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHH--HHH--C-CHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CC-----CCCCC----
Q ss_conf 445665421003444431015134--310--0-028889888744888897499998177888-67-----57885----
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPP--YGQ--G-LAQQALAIIDKEGWLEPNALVIIEEYAGTC-IS-----VGAAF---- 168 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPP--Y~~--~-~~~~~l~~l~~~~~L~~~gliiiE~~~~~~-~~-----~~~~~---- 168 (189)
.+|+..+++.. ..+||+|++|-- ++. . ...+.++.+. ..|+++|++++-...... .. +...|
T Consensus 123 ~~Dg~~fv~~~-~~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~--~~L~~~Gvlv~Nl~~~~~~~~~~l~~i~~~F~~~~ 199 (262)
T PRK04457 123 EADGAEYIKVF-PASTDVILVDGFDGEQIVDALVTQPFFRDCR--NALSSDGVFVTNLWSGDKRYQRYIERLLSVFEGRV 199 (262)
T ss_pred ECCHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCHHHHHHHH--HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 55389998548-6777889996889888860008299999999--86498939999868899865999999999728739
Q ss_pred EEEEEEECCCEEEEEEECCC
Q ss_conf 79998341856999865078
Q gi|254780405|r 169 HFLQERKYGDTKIYFFSYNP 188 (189)
Q Consensus 169 ~~~~~k~yG~t~i~f~~~np 188 (189)
-.+....-|++.+.=++-.|
T Consensus 200 ~~~~~~~~GN~Iv~A~k~~~ 219 (262)
T PRK04457 200 LELPAESHGNVAVFAFQSAP 219 (262)
T ss_pred EEEECCCCCEEEEEEECCCC
T ss_conf 99725899808999978999
No 118
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=98.12 E-value=1.1e-06 Score=60.46 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCH
Q ss_conf 896786110012221001101687330111000123566764200133221002234456654210-0344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI-GNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~-~~~~~fDiIf~DP 126 (189)
.+..|++++.|.|+++-+.+.+|+ ++++||+|+..++.+++. ++++++++|+.++... .....-..|+.+.
T Consensus 39 ~~d~VlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNL 110 (267)
T PRK00274 39 PGDRVLEIGPGLGALTEPLLERAA-KVTAIEIDRDLAPILRET-------DNLTIIEGDALKVDLEELAEGQPLKVVANL 110 (267)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-CEEEEECCHHHHHHHHHC-------CCEEEEECHHHHCCHHHHCCCCCEEEEECC
T ss_conf 999079963888889999996268-058863688999998504-------786999650664786774567872799558
Q ss_pred HHH
Q ss_conf 431
Q gi|254780405|r 127 PYG 129 (189)
Q Consensus 127 PY~ 129 (189)
||.
T Consensus 111 PY~ 113 (267)
T PRK00274 111 PYN 113 (267)
T ss_pred CCH
T ss_conf 830
No 119
>KOG1270 consensus
Probab=98.12 E-value=3.7e-06 Score=57.40 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5896786110012221001101687330111000123566764200133221-----00223445665421003444431
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEK-----NCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~-----~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
+.|.++||.+||+|-++.-..-.|| .|+.||.++.+++++++.....=..+ +.+..+.|+... -.+||.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~fDa 161 (282)
T KOG1270 88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-----TGKFDA 161 (282)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHCC-EEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHC-----CCCCCE
T ss_conf 5786478723675502323575088-5685265599999998751049033056414630201533214-----565645
Q ss_pred CCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 01513431-0002888988874488889749999817788
Q gi|254780405|r 122 VYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 122 If~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
|.+--=+. -...++.++.+.+ .|+|+|.+++-.-.++
T Consensus 162 VvcsevleHV~dp~~~l~~l~~--~lkP~G~lfittinrt 199 (282)
T KOG1270 162 VVCSEVLEHVKDPQEFLNCLSA--LLKPNGRLFITTINRT 199 (282)
T ss_pred EEEHHHHHHHHCHHHHHHHHHH--HHCCCCCEEEEEHHHH
T ss_conf 4419899987478999999999--8488982586411233
No 120
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.11 E-value=4.4e-06 Score=56.98 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCEEEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCC--C-CCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9678611001222100110168-7330111000123566764200133--2-2100223445665421003444431015
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSELLG--V-EKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~--~-~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
-++||=++.|-|+..=|++... -.++++||+|++.++++++-+.... . ..+++++.+|+.++++.... +||+|.+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV 155 (282)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEE
T ss_conf 776999889766999999836884337999708899999998666754335797368996107999874887-6778998
Q ss_pred C--HH--HHHCCHH-HHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 1--34--3100028-8898887448888974999981
Q gi|254780405|r 125 D--PP--YGQGLAQ-QALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 125 D--PP--Y~~~~~~-~~l~~l~~~~~L~~~gliiiE~ 156 (189)
| +| .+.++.. +..+.+. +.|+++|+++..+
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~--~~L~~~Gi~v~q~ 190 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCR--RALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH--HHCCCCCEEEEEC
T ss_conf 5889988430237799999999--8628896899944
No 121
>KOG1253 consensus
Probab=98.08 E-value=1.1e-06 Score=60.47 Aligned_cols=103 Identities=26% Similarity=0.305 Sum_probs=78.7
Q ss_pred CCCCEEEECCCCCCCCHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCCC
Q ss_conf 589678611001222100110--168733011100012356676420013322100223445665421--0034444310
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEAL--SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK--IGNISPFQLV 122 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEal--SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~--~~~~~~fDiI 122 (189)
..+-++||-+|+||..+|.-+ --|+..|++.|.++.+++.+++|++.++.++.++...+|+..+.- ..-...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf 67500898764551788899887042453103678777889998665506732211244102778987564521246667
Q ss_pred CCCHHHHH--CCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 15134310--00288898887448888974999981
Q gi|254780405|r 123 YLDPPYGQ--GLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 123 f~DPPY~~--~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
=+|| |+. ...+..+..+ .++|++.+-+
T Consensus 188 DLDP-yGs~s~FLDsAvqav------~~gGLL~vT~ 216 (525)
T KOG1253 188 DLDP-YGSPSPFLDSAVQAV------RDGGLLCVTC 216 (525)
T ss_pred ECCC-CCCCCHHHHHHHHHH------HCCCEEEEEE
T ss_conf 2378-899627799999986------4087799982
No 122
>PRK10742 putative methyltransferase; Provisional
Probab=98.06 E-value=1.2e-05 Score=54.39 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=84.0
Q ss_pred CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6786110012221001101687330111000123566764200133--------22100223445665421003444431
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLG--------VEKNCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~--------~~~~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
-+|||.-||-|.=++...|.|+ +|+++|.+|.....++.-++... ...+.+++++|+.+++.... .++|+
T Consensus 90 P~VlDATAGLGrDAfvLAslGc-~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~~-~~~DV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQV 167 (250)
T ss_pred CEEEECCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCC-CCCCE
T ss_conf 8189878874688999981798-699997889999999999999873815589999616786586899997358-89888
Q ss_pred CCCCHHHHHC----CHHHHHHHHHH-------------CCCCCCCEEEEEECCCCCCCC--CCCCCEEEEEEECCCEEEE
Q ss_conf 0151343100----02888988874-------------488889749999817788867--5788579998341856999
Q gi|254780405|r 122 VYLDPPYGQG----LAQQALAIIDK-------------EGWLEPNALVIIEEYAGTCIS--VGAAFHFLQERKYGDTKIY 182 (189)
Q Consensus 122 If~DPPY~~~----~~~~~l~~l~~-------------~~~L~~~gliiiE~~~~~~~~--~~~~~~~~~~k~yG~t~i~ 182 (189)
||+||-|... ...+-+..+.. ..+-....-+++-++.+..+- ....+.+ +-| .+++-
T Consensus 168 IYLDPMFP~rkKsAlvKKeMq~l~~Lvg~d~Da~~LL~~Al~~a~~RVVVKRP~~A~~L~g~~P~~si-~GK---s~RFD 243 (250)
T PRK10742 168 VYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAV-VTK---GHRFD 243 (250)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEE-ECC---CEEEE
T ss_conf 99736677655412234379999998578837899999999667884998788887444899998588-448---74368
Q ss_pred EEECCCC
Q ss_conf 8650789
Q gi|254780405|r 183 FFSYNPV 189 (189)
Q Consensus 183 f~~~np~ 189 (189)
.|.-+|+
T Consensus 244 VY~~~~~ 250 (250)
T PRK10742 244 IYAGTPV 250 (250)
T ss_pred ECCCCCC
T ss_conf 6689999
No 123
>PHA02056 putative methyltransferase
Probab=98.01 E-value=1.4e-06 Score=59.83 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=59.4
Q ss_pred CCCCCC-CCEEEECCCCCCCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 364558-967861100122210011016873--30111000123566764200133221002234456654210034444
Q gi|254780405|r 43 YPVFLD-STRMLNIFAGTGSVGFEALSRGCH--YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPF 119 (189)
Q Consensus 43 ~~~~~~-~~~vlDlfaGsG~lgiEalSrGA~--~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~f 119 (189)
|..+.- ..+|+|||||.|.|+. |+-.+++ +++.||.|+.-+.+-++- -..++.|++|++.+... ..|
T Consensus 58 F~IDa~~tG~iiDLCAGIG~LSy-~~~~r~kp~~ivCVErN~~y~~vGkki------lPeAtWI~~Dv~~~~~~---~~F 127 (279)
T PHA02056 58 FTIDAHCTGKVLDLCAGIGRLSF-CMLHRCKPEKIVCVELNPEFARIGKRL------LPEAEWITSDVFEFESN---EKF 127 (279)
T ss_pred EEEECCCCCEEEEECCCCCHHHH-HHHHCCCCCCEEEEEECHHHHHHHHHC------CCCCEEEECCEECCCCC---CCE
T ss_conf 25502578538882146123579-998506886358994085798864320------76402773231303566---620
Q ss_pred CCCCCCHHHHH
Q ss_conf 31015134310
Q gi|254780405|r 120 QLVYLDPPYGQ 130 (189)
Q Consensus 120 DiIf~DPPY~~ 130 (189)
|+...+|||+.
T Consensus 128 D~aIsNPPFG~ 138 (279)
T PHA02056 128 DVVISNPPFGK 138 (279)
T ss_pred EEEECCCCCCC
T ss_conf 04533899764
No 124
>PRK06202 hypothetical protein; Provisional
Probab=97.99 E-value=3.2e-06 Score=57.79 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8967861100122210011016873-----30111000123566764200133221002234456654210034444310
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCH-----YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~-----~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
..-+|||++||+|-+.....-.+.+ +++.+|.++.+++.++++.+..+. .++....|++.. ..+.||+|
T Consensus 61 r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~--~~~~~~~d~l~~----~~~~~DvV 134 (233)
T PRK06202 61 RPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGV--TFRFAVSDELVA----EGERFDVV 134 (233)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCC--CEEEEEHHHHCC----CCCCCCEE
T ss_conf 872899834787579999999997559963899977988999999873403698--369973432024----57887576
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
++.==-..=...++...+....-....++++.
T Consensus 135 ~~sl~LHHf~d~ql~~ll~~~~~~ar~~vvin 166 (233)
T PRK06202 135 YSNHFLHHLDDADVVRLLADMAALARRLVLHN 166 (233)
T ss_pred EHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 03246864982999999999998638269974
No 125
>KOG1271 consensus
Probab=97.99 E-value=9.3e-06 Score=55.03 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHCCC---CCCCCC-EEEECCCCCCCCHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999987763336---455896-78611001222100110168733-01110001235667642001332210022344
Q gi|254780405|r 31 TKKALFDILTHVYP---VFLDST-RMLNIFAGTGSVGFEALSRGCHY-VLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105 (189)
Q Consensus 31 vrealFniL~~~~~---~~~~~~-~vlDlfaGsG~lgiEalSrGA~~-v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~ 105 (189)
+-|-+-+||..... .. +.+ +||||+||.|.+=.+.++-|... .+.||.+++|++.++.-++..++++.+++-+.
T Consensus 47 ae~riv~wl~d~~~~~rv~-~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271 47 AEERIVDWLKDLIVISRVS-KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 8999999998654441102-243211661579618899988713888864531578899999878875278853168873
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHH---------HCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC-----CCCCEEE
Q ss_conf 566542100344443101513431---------00028889888744888897499998177888675-----7885799
Q gi|254780405|r 106 DVLRLGKIGNISPFQLVYLDPPYG---------QGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISV-----GAAFHFL 171 (189)
Q Consensus 106 D~~~~~~~~~~~~fDiIf~DPPY~---------~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~-----~~~~~~~ 171 (189)
|++.- .....+||+|.=---|+ .+.....+..+ .++|+++|+++|-+--.+..++ ..+|+.+
T Consensus 126 DI~~~--~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v--~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271 126 DITDP--DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSV--EKLLSPGGIFVITSCNFTKDELVEEFENFNFEYL 201 (227)
T ss_pred ECCCC--CCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEHHHH--HHCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEE
T ss_conf 22577--5555432389605741225507777665434435568--6303889679998557658999999725974999
Q ss_pred EEE
Q ss_conf 983
Q gi|254780405|r 172 QER 174 (189)
Q Consensus 172 ~~k 174 (189)
.+-
T Consensus 202 ~tv 204 (227)
T KOG1271 202 STV 204 (227)
T ss_pred EEE
T ss_conf 960
No 126
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=97.98 E-value=9.5e-06 Score=54.97 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCC-CHHHHH
Q ss_conf 858999999987763336455896786110012221001101687330111-000123566764200133221-002234
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFV-DNNSESIRLIRRNSELLGVEK-NCNIFF 104 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~v-E~~~~a~~~lk~N~~~~~~~~-~~~ii~ 104 (189)
..-++..++.|.-. -..|..++|-|||||.+-+||-..|+ +++.. |.+...+.-.+.|++..+..+ -..+..
T Consensus 187 ~~p~~~~~~~~~~~-----~~~g~~~~dp~~g~gg~~~~~gl~g~-~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~ 260 (358)
T TIGR01177 187 LDPKLARALVNLAG-----VKEGDRLLDPFCGTGGFLIEAGLLGA-KPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKR 260 (358)
T ss_pred CCHHHHHHHHHHHH-----CCCCCCEECCCCCCCCHHHHHHHHCC-CCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEE
T ss_conf 55467777765420-----24675100422266603323333211-0002440356764252111333055431567640
Q ss_pred HHHHHHHHHCCC--CCCCCCCCCHHHHHC----------CHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 456654210034--444310151343100----------028889888744888897499998177888
Q gi|254780405|r 105 RDVLRLGKIGNI--SPFQLVYLDPPYGQG----------LAQQALAIIDKEGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 105 ~D~~~~~~~~~~--~~fDiIf~DPPY~~~----------~~~~~l~~l~~~~~L~~~gliiiE~~~~~~ 161 (189)
.|+..+...... +.+|-+..||||+.. .+...++.+. ..++++|.+..-......
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~~~~~~l~~~~~~~~~--~~~~~~g~~~~~~~~~~~ 327 (358)
T TIGR01177 261 GDAKDLPLRLPGLDESVDAIATDPPYGRSTTAAGDGLEELYEKSLEELH--EVLKGGGWLAVAVPTDLD 327 (358)
T ss_pred CCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCEEEEEECCCC
T ss_conf 3300111003531011222212565453111221036888888888888--864268717997403346
No 127
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=97.98 E-value=4.9e-06 Score=56.69 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=70.6
Q ss_pred ECCCCCCCCCCHHHHH--HHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 4378888677858999--999987763336455896786110012221001101687----3301110001235667642
Q gi|254780405|r 17 HTPQNRSIRPSDSRTK--KALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC----HYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 17 ~~~~~~~~RPt~~~vr--ealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA----~~v~~vE~~~~a~~~lk~N 90 (189)
..|++.-.=|-+.|+- .-|-+.|.......-.+.+.||+ |||+-.|-+|- |+ -+.++.|+|+.+++.+++|
T Consensus 32 diP~~~LcP~iP~R~nYIh~l~DLL~~~~~~~~~~v~gLDI--GtGAscIYPLL-g~~~y~W~fvgtDId~~sl~~A~~n 108 (254)
T pfam05971 32 DIPDGFLCPPVPGRADYIHWVADLLGHQDSDIPTLRRALDI--GTGANCIYPLL-GVTEYGWRFVGSEVDPQSLNSAKAI 108 (254)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE--CCCHHHHHHHH-CCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 07988838999868899999999975427887777467773--36641577754-0400486379762798999999999
Q ss_pred HCCC-CCCCCHHHHHH-HHHHHHH--HCCCCCCCCCCCCHHHHHC
Q ss_conf 0013-32210022344-5665421--0034444310151343100
Q gi|254780405|r 91 SELL-GVEKNCNIFFR-DVLRLGK--IGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 91 ~~~~-~~~~~~~ii~~-D~~~~~~--~~~~~~fDiIf~DPPY~~~ 131 (189)
++.+ ++++++++... +-..+++ ....+.||+..++|||-..
T Consensus 109 v~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdftmCNPPF~~S 153 (254)
T pfam05971 109 VEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFTLCNPPFHAS 153 (254)
T ss_pred HHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 985833231169996378110223446876606663037986678
No 128
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=97.96 E-value=2.1e-06 Score=58.80 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=62.5
Q ss_pred EEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH--
Q ss_conf 786110012221001101687330111000123566764200133221002234456654210034444310151343--
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY-- 128 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY-- 128 (189)
+|+|||||.|.+++.+-.-|..-+.++|+|+.|+++.+.|... .+++|+.++.. ......|++..-||-
T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~--------~~~~Di~~~~~-~~~~~~Dvl~ggpPCQ~ 72 (319)
T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPK--------VPIGDITLIDI-KDIPDIDILTGGFPCQD 72 (319)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC--------CCCCCCCCCCH-HHCCCCCEEEECCCCCC
T ss_conf 5899780707899999987992999983899999999987799--------96177540887-47888688986899987
Q ss_pred -H------------HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf -1------------000288898887448888974999981
Q gi|254780405|r 129 -G------------QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 129 -~------------~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
. ..++...+..+.. ++|. ++++|-
T Consensus 73 fS~ag~~~~~~d~r~~L~~~~~~~v~~---~~Pk-~~v~EN 109 (319)
T pfam00145 73 FSIAGKQKGFEDTRGTLFFEIIRIIKE---KKPK-AFLLEN 109 (319)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCC-EEEEEC
T ss_conf 240155688534331389999998775---1986-887304
No 129
>KOG2078 consensus
Probab=97.96 E-value=2.2e-06 Score=58.77 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=57.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHH
Q ss_conf 8967861100122210011016873301110001235667642001332210-0223445665421
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKN-CNIFFRDVLRLGK 112 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~-~~ii~~D~~~~~~ 112 (189)
-|-.+.|+|||-|-+++.|.-.|+ .|++.|.+++++++++.|+..+.+... +++++.|+..+++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCCHHHHHHCCCCCCCCCHHHCCC-EEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHHH
T ss_conf 741334440476743350222585-89934799789999997565366561363664461888741
No 130
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=97.93 E-value=4.9e-05 Score=50.75 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 589999999877633-36455896786110012221001-1016873301110001235667642001332210022344
Q gi|254780405|r 28 DSRTKKALFDILTHV-YPVFLDSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105 (189)
Q Consensus 28 ~~~vrealFniL~~~-~~~~~~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~ 105 (189)
.+....-+++.|.-. +-..-.+.+++|+++|.|-=||- |+-+.-.+++.+|.+.+-+..+++-+..++++ |++++++
T Consensus 48 ~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~ 126 (216)
T PRK00107 48 EEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLK-NVTVVHG 126 (216)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCC-CEEEEEH
T ss_conf 999999888578898733766587799707999942678999778772999738769999999999976999-8799863
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 566542100344443101513431000288898887448888974999981778
Q gi|254780405|r 106 DVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 106 D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
.+.++. ...+||+|.+= +-.....+++... .+++++|.+++-....
T Consensus 127 R~E~~~---~~~~fD~itsR---Ava~l~~l~~~~~--~~l~~~g~~i~~KG~~ 172 (216)
T PRK00107 127 RAEEFG---QEEKFDVVTSR---AVASLSDLVELCL--PLLKPGGRFLALKGQD 172 (216)
T ss_pred HHHCCC---CCCCCCEEEEE---HHHCHHHHHHHHH--HHCCCCCEEEEECCCC
T ss_conf 544046---56786689860---5406999999999--7548897999987999
No 131
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=97.92 E-value=5.4e-06 Score=56.43 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 867785899999998776333645589678611001-2221001101687330111000123566764200133221002
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAG-TGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaG-sG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
..-|.+..-|-++. +.+ .++.|+++|=++-. .=|+++ ||+.-.++|+-+|+|.+.++.+++.++..++ +++
T Consensus 24 ~~T~ET~v~Ra~l~--~~r---gdL~Gk~iL~vGDDDLtSlA~-al~~~p~~I~VvDIDeRll~fI~~~A~~~gl--~i~ 95 (243)
T pfam01861 24 FVTPETTVARVALM--YSR---GDLEGKEILVLGDDDLTSLAA-ALTGLPKRIAVVDIDERLIKFIERVAKEEGL--KIE 95 (243)
T ss_pred CCCHHHHHHHHHHH--HHC---CCCCCCEEEEECCCCHHHHHH-HHCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CEE
T ss_conf 31628899999999--873---885798799972861878999-9648985489996758999999999997499--716
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
Q ss_conf 234456654210034444310151343100
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~ 131 (189)
.+..|+.+-++..-..+||++|.||||-..
T Consensus 96 ~~~~DlR~pLP~~l~~~FD~f~TDPPyT~~ 125 (243)
T pfam01861 96 AFVHDLRNPLPEDLKHKFDVFITDPPETVD 125 (243)
T ss_pred EEEECCCCCCCHHHHCCCCEEECCCCCCHH
T ss_conf 887410148999996167989718998778
No 132
>KOG1661 consensus
Probab=97.92 E-value=1.4e-05 Score=53.89 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCH-HHHHCCCCCCH--HHHHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 589999999877633364558967861100122210-01101687330--1110001235667642001332--------
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVG-FEALSRGCHYV--LFVDNNSESIRLIRRNSELLGV-------- 96 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lg-iEalSrGA~~v--~~vE~~~~a~~~lk~N~~~~~~-------- 96 (189)
-+.+=|.|++.|+ .|.+|||+++|||-|+ +-|+--|+.-. +.||.-++.++..++|+++.-.
T Consensus 69 ha~~le~L~~~L~-------pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661 69 HATALEYLDDHLQ-------PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred HHHHHHHHHHHHC-------CCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999998623-------473101337874089999999945777665144415999999998777650473045564
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf -2100223445665421003444431015134310002888988874488889749999
Q gi|254780405|r 97 -EKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 97 -~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
..+..++.+|+.+.. ....+||-|++-.- .....+++++. |+++|-+++
T Consensus 142 ~~~~l~ivvGDgr~g~--~e~a~YDaIhvGAa-a~~~pq~l~dq------L~~gGrlli 191 (237)
T KOG1661 142 KRGELSIVVGDGRKGY--AEQAPYDAIHVGAA-ASELPQELLDQ------LKPGGRLLI 191 (237)
T ss_pred CCCCEEEEECCCCCCC--CCCCCCCEEEECCC-CCCCHHHHHHH------HCCCCEEEE
T ss_conf 1486479967762347--75687665787667-62247999986------343872898
No 133
>KOG2915 consensus
Probab=97.92 E-value=7.1e-06 Score=55.70 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=86.1
Q ss_pred EEEEECCEEEECCCCCC---CCCCHHHHHHHH-----------HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC-
Q ss_conf 86410886744378888---677858999999-----------987763336455896786110012221001101687-
Q gi|254780405|r 7 IGGKFQRRLLHTPQNRS---IRPSDSRTKKAL-----------FDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC- 71 (189)
Q Consensus 7 i~G~~kg~~l~~~~~~~---~RPt~~~vreal-----------FniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA- 71 (189)
|=|+.=|-++.+.++.. .|||++.=--+| -+++-+.... --|++||+-+.|||+|+. |++|-.
T Consensus 51 iIGK~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i-~PGsvV~EsGTGSGSlSh-aiaraV~ 128 (314)
T KOG2915 51 IIGKPYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEI-RPGSVVLESGTGSGSLSH-AIARAVA 128 (314)
T ss_pred EECCCCCCEEEECCCCEEEEECCCHHHHHHHCCCCCEEEECCCHHHHHHHHCC-CCCCEEEECCCCCCHHHH-HHHHHHC
T ss_conf 11577553465337847999458868865435676247745569999998657-999789863788634889-9998637
Q ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf --33011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 72 --HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 72 --~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+++..|.+....+.+++-.+.-+..+++++...|+-..--.....++|-||+|-|
T Consensus 129 ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP 186 (314)
T KOG2915 129 PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLP 186 (314)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCC
T ss_conf 6762699983287899999999973778634899964156773531342356997589
No 134
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=97.90 E-value=4e-05 Score=51.30 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 58999999987763336455896786110012221001-10168733011100012356676420013322100223445
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
.+....-+.+.|+......-.+.+++|+++|.|-=||- |+-+--.+++.||.+.+-+..+++-+..+++ +++++++..
T Consensus 28 ~~i~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L-~nv~v~~~R 106 (184)
T pfam02527 28 NELLERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNL-ENVTIVHAR 106 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCC-CCEEEEECC
T ss_conf 9999999999999877426679868834798884679999967785599992828999999999998599-976999560
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 66542100344443101513431000288898887448888974999981778
Q gi|254780405|r 107 VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 107 ~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
+.++. ...+||+|.+= +-.....+++... .+++++|.+++-..+.
T Consensus 107 ~E~~~---~~~~~D~v~aR---A~a~l~~ll~~~~--~~l~~~g~~i~~KG~~ 151 (184)
T pfam02527 107 AEEYQ---HEEQYDVITSR---AVASLNELTEWAL--PLLKPGGYFLAYKGKQ 151 (184)
T ss_pred HHHCC---CCCCCCEEEEC---HHCCHHHHHHHHH--HHCCCCCEEEEECCCC
T ss_conf 44146---44678789981---0057999999999--8638898999988999
No 135
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.88 E-value=1.6e-05 Score=53.68 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 886778589999999877633364558967861100122210011016873--301110001235667642001332210
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCH--YVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~--~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
..+-||++..-+.+-+.+..+ .|..||+|+.|||.+.=.-||||.+ .++++|.|++-+..+.+-. +.
T Consensus 27 GaI~PsSs~lA~~M~s~I~pe-----sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~ 95 (194)
T COG3963 27 GAILPSSSILARKMASVIDPE-----SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PG 95 (194)
T ss_pred EEECCCCHHHHHHHHHCCCCC-----CCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHC------CC
T ss_conf 135578579999998434844-----5976477769866768999965799543689982779999999758------87
Q ss_pred HHHHHHHHHHHH---HHCCCCCCCCCCCCHHHHHCCHH---HHHHHHHHCCCCCCCEEEE-EECC
Q ss_conf 022344566542---10034444310151343100028---8898887448888974999-9817
Q gi|254780405|r 100 CNIFFRDVLRLG---KIGNISPFQLVYLDPPYGQGLAQ---QALAIIDKEGWLEPNALVI-IEEY 157 (189)
Q Consensus 100 ~~ii~~D~~~~~---~~~~~~~fDiIf~DPPY~~~~~~---~~l~~l~~~~~L~~~glii-iE~~ 157 (189)
++++++|++.+- ..-++..||.|+.-=|...--.. .+++.+.. .|..+|-++ +...
T Consensus 96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~--rl~~gg~lvqftYg 158 (194)
T COG3963 96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLY--RLPAGGPLVQFTYG 158 (194)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEEEC
T ss_conf 5130540565787786527974016886560024867789999999998--56899727999846
No 136
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.86 E-value=2.4e-05 Score=52.58 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CH-
Q ss_conf 9678611001222100110168733011100012356676420013322100223445665421003444431015-13-
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL-DP- 126 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~-DP- 126 (189)
-.++|||+||||-+|.+-=+ =|.+.+.||+|...++.+.+- +. .-+..+.|+..|+.....++||+|-+ |-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~-~a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRD-MADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CCEEEECCCCCCCCCHHHHH-HHHHCCCCCHHHHHHHHHHHC----CC--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 20234426676766276788-886512776269999998862----41--578889899987552267764301245678
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 431000288898887448888974999981
Q gi|254780405|r 127 PYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 127 PY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
|| .+..+.++.... ..|+++|++.+..
T Consensus 199 ~Y-lG~Le~~~~~aa--~~L~~gGlfaFSv 225 (287)
T COG4976 199 PY-LGALEGLFAGAA--GLLAPGGLFAFSV 225 (287)
T ss_pred HH-HCCHHHHHHHHH--HHCCCCCEEEEEE
T ss_conf 86-400346899999--8558986489872
No 137
>PRK01581 speE spermidine synthase; Validated
Probab=97.86 E-value=1.5e-05 Score=53.77 Aligned_cols=109 Identities=19% Similarity=0.162 Sum_probs=77.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHH--HCCCCC----CCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8967861100122210011016-873301110001235667642--001332----210022344566542100344443
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRN--SELLGV----EKNCNIFFRDVLRLGKIGNISPFQ 120 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N--~~~~~~----~~~~~ii~~D~~~~~~~~~~~~fD 120 (189)
.-.+||=|++|-|--.=|-|.- +.++|+.||.|+..++.++.+ +..++- ..+++++++||+.|++. ....||
T Consensus 139 ~~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~-~~~~FD 217 (363)
T PRK01581 139 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSS-PSSLYD 217 (363)
T ss_pred CCCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHC-CCCCCC
T ss_conf 8773899807643999998717985627899569999998751979987512001498049992108999861-675442
Q ss_pred CCCCCHHHHH-----CCHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 1015134310-----0028889888744888897499998177
Q gi|254780405|r 121 LVYLDPPYGQ-----GLAQQALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 121 iIf~DPPY~~-----~~~~~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
+|++|=|=-. .+|...+-.+.+ ..|.++|.+++...+
T Consensus 218 vIIVDlPDP~n~~L~KLYS~eFY~Ll~-~~La~dG~~vVQSTS 259 (363)
T PRK01581 218 VIIIDFPDPATELLSTLYTSELFARIA-TFLTEDGAFVCQSNS 259 (363)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECC
T ss_conf 899958999862466673599999999-861988539996079
No 138
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.84 E-value=8.8e-06 Score=55.18 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCHH
Q ss_conf 967861100122210011016873301110001235667642001332210022344566542100344-4431015134
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS-PFQLVYLDPP 127 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~-~fDiIf~DPP 127 (189)
.-.++|||||.|.+.+..-.-|..-+.++|+|+.|+++.+.|... ..++.+|+.++....... ++|++..-||
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCHHHHHHHHCHHHCCCCCCCEEEECCC
T ss_conf 854998658756588999864984899874698899999985888------74203037660522235567637985899
Q ss_pred HH---------------HCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 31---------------000288898887448888974999981
Q gi|254780405|r 128 YG---------------QGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 128 Y~---------------~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
=. ..++.+....|.. ++| ..+++|-
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~---~~P-~~fv~EN 116 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ---LRP-KFFVLEN 116 (328)
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHH---HCC-CEEEEEC
T ss_conf 721334077667767334769999999996---389-8799966
No 139
>KOG2899 consensus
Probab=97.83 E-value=1.7e-05 Score=53.42 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=68.6
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHH---------------------
Q ss_conf 455896786110012221001101-68733011100012356676420013322-1002---------------------
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCN--------------------- 101 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~--------------------- 101 (189)
..++++.+||++|-+|.+++.-.+ -|+..+..+|+|+..++-+++|++...-. ..+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22476205750677546589999860643346761568999999973566010103345787543354445410124466
Q ss_pred -----HHHHHH-----------HHHHHHCCCCCCCCCCCCHH-------HHHCCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf -----234456-----------65421003444431015134-------310002888988874488889749999817
Q gi|254780405|r 102 -----IFFRDV-----------LRLGKIGNISPFQLVYLDPP-------YGQGLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 102 -----ii~~D~-----------~~~~~~~~~~~fDiIf~DPP-------Y~~~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
.+-.|+ -+++ .....+||+|++=-= +++.-....+..|. .+|.|||++++|-.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis--~ll~pgGiLvvEPQ 210 (288)
T KOG2899 135 RAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKIS--SLLHPGGILVVEPQ 210 (288)
T ss_pred CCCCCCCCCCHHCCCCCEEEECCHHH-HHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH--HHHCCCCEEEECCC
T ss_conf 51003677201013233798600455-505654227999773346764564578999999999--86086857997588
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=97.83 E-value=1.5e-05 Score=53.79 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=64.5
Q ss_pred CCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCC
Q ss_conf 8967861100122210--01101687330111000123566764200133221002234456654210034--4443101
Q gi|254780405|r 48 DSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNI--SPFQLVY 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~--~~fDiIf 123 (189)
.+..|||+.|--|+=. |-++..----|+++|.++..++.|..|++.+|+. ++.|++.|...+...... --||-|+
T Consensus 77 ~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~-n~~v~~~DgR~f~~~~~~~eifFD~iL 155 (284)
T TIGR00446 77 EKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVL-NVAVINVDGRKFGAVVLKMEIFFDRIL 155 (284)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHE-EEEEEECCCCHHHHHHCCCEEEEEEEE
T ss_conf 8887999740889648999998658851899737634106678655562100-333241376300123144303432145
Q ss_pred CCHHH
Q ss_conf 51343
Q gi|254780405|r 124 LDPPY 128 (189)
Q Consensus 124 ~DPPY 128 (189)
+|.|=
T Consensus 156 LDAPC 160 (284)
T TIGR00446 156 LDAPC 160 (284)
T ss_pred ECCCC
T ss_conf 25787
No 141
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=97.78 E-value=1.3e-05 Score=54.18 Aligned_cols=104 Identities=14% Similarity=0.233 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CC-CCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 896786110012221001-10168733011100012356676420013-------32-21002234456654210-0344
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELL-------GV-EKNCNIFFRDVLRLGKI-GNIS 117 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~-------~~-~~~~~ii~~D~~~~~~~-~~~~ 117 (189)
.+..|+||+||.|.+-+. |+.-||+.++.||+.+.+++.++.+.+.+ +. ...++++++|..+-... ....
T Consensus 42 ~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~~~~~~ 121 (205)
T pfam08123 42 PQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERVEEIIP 121 (205)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHC
T ss_conf 76889985888329999999870965388888656689999999999999999958876873899777788588998634
Q ss_pred CCCCCCCCH-HHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 443101513-4310002888988874488889749999
Q gi|254780405|r 118 PFQLVYLDP-PYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 118 ~fDiIf~DP-PY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
..|+||++= =|+..+...+.+.+.. +++|+.|+.
T Consensus 122 ~a~VI~vNN~~F~~~Ln~~L~e~f~~---lk~GtkIVS 156 (205)
T pfam08123 122 EADVILVNNFAFDPELNLQLKEMLQD---LKDGCKIIS 156 (205)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHC---CCCCCEEEE
T ss_conf 79889994324698899999999972---999888997
No 142
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.77 E-value=2.8e-05 Score=52.16 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 8967861100122210011016-873301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
.|.+|||++||=|++++.|..+ |+ +|+.+-+|.+-.+.+++-++.+. +++...|-.++ ..+||-|..==
T Consensus 167 ~G~~VLeIGcGWGgla~~aA~~~g~-~VtgiTlS~eQ~~~a~~r~~gl~----v~v~l~DYRd~-----~g~fD~IvSIe 236 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLP----VEIRLQDYRDL-----NGQFDRIVSVG 236 (383)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCCCC----CEEEECCHHHC-----CCCCCEEEEEE
T ss_conf 9997988578749999999997497-59998588999999999973898----78997152443-----67735599971
Q ss_pred HH---HHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 43---1000288898887448888974999981
Q gi|254780405|r 127 PY---GQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 127 PY---~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
-+ +...+...++.+.. +|+|+|+.+++.
T Consensus 237 M~EhVG~~~~~~yF~~i~~--lLkp~G~~~lqt 267 (383)
T PRK11705 237 MFEHVGPKNYRTYFEVVDR--CLKPDGLFLLHT 267 (383)
T ss_pred HHHHCCHHHHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 4865287779999999998--569997399999
No 143
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.77 E-value=4.7e-05 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 645589678611001222100110
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSVGFEAL 67 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~lgiEal 67 (189)
..+.+|+.|+|+|||||.+|=++=
T Consensus 23 k~~~s~k~f~DiFaGtGVV~~~fk 46 (330)
T COG3392 23 KEDLSGKIFCDIFAGTGVVGRFFK 46 (330)
T ss_pred HCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 411578753200268626779998
No 144
>KOG1540 consensus
Probab=97.76 E-value=2.1e-05 Score=52.94 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=73.8
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CC------CCHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 8967861100122210011016-87------3301110001235667642001332210--0223445665421003444
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GC------HYVLFVDNNSESIRLIRRNSELLGVEKN--CNIFFRDVLRLGKIGNISP 118 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA------~~v~~vE~~~~a~~~lk~N~~~~~~~~~--~~ii~~D~~~~~~~~~~~~ 118 (189)
.+.++||+.+|||-+++--+-. ++ ++|+-.|+|++.++..++-.+...+... +.++++||.++. -....
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp--Fdd~s 177 (296)
T KOG1540 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP--FDDDS 177 (296)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC--CCCCC
T ss_conf 7875898347752567779876113457777617999389899999987775159776871699947701089--99775
Q ss_pred CCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEEE-ECCCCC
Q ss_conf 431015134310002888988874-488889749999-817788
Q gi|254780405|r 119 FQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVII-EEYAGT 160 (189)
Q Consensus 119 fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~gliii-E~~~~~ 160 (189)
||..-+- |+-.+.......|.+ ...|||+|.+.+ |-++-+
T Consensus 178 ~D~yTia--fGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540 178 FDAYTIA--FGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CEEEEEE--CCEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 1158884--21114787789999998752778679999735454
No 145
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=97.74 E-value=2.7e-05 Score=52.26 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=57.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHH-HHHHHHHHH--HCCCCCC
Q ss_conf 896786110012221001101687----33011100012356676420013-322100223-445665421--0034444
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGC----HYVLFVDNNSESIRLIRRNSELL-GVEKNCNIF-FRDVLRLGK--IGNISPF 119 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA----~~v~~vE~~~~a~~~lk~N~~~~-~~~~~~~ii-~~D~~~~~~--~~~~~~f 119 (189)
+.-+.||+ |||+-.|-.|- |+ -+-++.|+|+.+++.+++|++.+ ++++++++. +.+-...+. ....+.|
T Consensus 117 ~~v~gLDI--GtGAncIYPLL-G~~~ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~f 193 (326)
T PRK11727 117 ANVRVLDI--GVGANCIYPII-GVQEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 193 (326)
T ss_pred CCCEEEEC--CCCCCEEEEEC-CCEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEE
T ss_conf 87236750--56743112101-4300176379961798999999999984820105279996278676532458876657
Q ss_pred CCCCCCHHHHHC
Q ss_conf 310151343100
Q gi|254780405|r 120 QLVYLDPPYGQG 131 (189)
Q Consensus 120 DiIf~DPPY~~~ 131 (189)
|+..++|||...
T Consensus 194 dftmCNPPF~~S 205 (326)
T PRK11727 194 DLTLCNPPFHAS 205 (326)
T ss_pred EEEECCCCCCCC
T ss_conf 778518987678
No 146
>pfam04378 DUF519 Protein of unknown function (DUF519). Bacterial family of unknown function, possibly secreted.
Probab=97.72 E-value=2.1e-05 Score=52.91 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=71.9
Q ss_pred CEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC--CCCCCCCCCCCHH
Q ss_conf 67861100122210011016873301110001235667642001332210022344566542100--3444431015134
Q gi|254780405|r 50 TRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG--NISPFQLVYLDPP 127 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~--~~~~fDiIf~DPP 127 (189)
..-++.|.||=.++- .+-|.-.+.+++|.++.-.+.+++|+.. ..++++++.|.++.++.. ..++=-+|++|||
T Consensus 59 ~~~l~~YPGSP~ia~-~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~a~lPP~~rRglVLIDPp 134 (245)
T pfam04378 59 GGKLRYYPGSPLLAR-QLLRAQDRLVLCELHPSDYPLLKAEFAG---DRRVRVHQADGFAALKAFLPPKERRGLVLIDPP 134 (245)
T ss_pred CCCCCCCCCCHHHHH-HHCCCCCCEEEEECCHHHHHHHHHHHCC---CCCCEEEECCHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 999688899899999-8489667689885597999999987455---876579936589999966899778679996798
Q ss_pred HHH-CCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 310-002888988874488889749999
Q gi|254780405|r 128 YGQ-GLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 128 Y~~-~~~~~~l~~l~~~~~L~~~gliii 154 (189)
|+. +.+..+.+.+.+.--=-++|++++
T Consensus 135 YE~k~ey~~v~~~l~~a~~r~~~g~y~i 162 (245)
T pfam04378 135 FELKDEYQRVVAALREAYKRWPTGIYAI 162 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6665699999999999998578837999
No 147
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=97.67 E-value=0.00012 Score=48.38 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=93.3
Q ss_pred CCCCH--HHHHHHHHHHHHHCCCCC-CC----CCEEEECCCCCCCCHHH-H-HCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 67785--899999998776333645-58----96786110012221001-1-0168733011100012356676420013
Q gi|254780405|r 24 IRPSD--SRTKKALFDILTHVYPVF-LD----STRMLNIFAGTGSVGFE-A-LSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 24 ~RPt~--~~vrealFniL~~~~~~~-~~----~~~vlDlfaGsG~lgiE-a-lSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
|+.++ +.+.+-+.+.|.-.-..+ .+ +.+++|+++|.|-=||- | +.+---++|.+|-+.+-+..+++-...+
T Consensus 18 T~~~~~~~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L 97 (197)
T TIGR00138 18 TSIKTPEEIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKEL 97 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 54167167877640222433000024566663312677347897145653422057642898427740689999999983
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 32210022344566542100344443101513431000288898887448888974999981778
Q gi|254780405|r 95 GVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 95 ~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
+++ |++++++.+.+........+||.|..= +-.....+++.. ..+++++|.+++-..+.
T Consensus 98 ~L~-N~~i~~~R~E~~g~~~~~~~~D~~~~R---Al~~l~~~~e~~--~~L~~~~G~~~~~KG~~ 156 (197)
T TIGR00138 98 GLN-NVEILNGRVEDLGSKQHEEQFDVITSR---ALVSLNELLELT--LPLLKVGGYFLAYKGKY 156 (197)
T ss_pred CCC-CCHHEEHHHHHCCCCCCCCCCCEEEEC---CCHHHHHHHHHH--HHCCCCCCEEEEECCCC
T ss_conf 899-824200112550554533357878980---310246888866--30378897899970866
No 148
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.67 E-value=5.1e-05 Score=50.62 Aligned_cols=108 Identities=17% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCEEEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCC-CC---CCHHHHHHHHHHHHHHC----CCCC
Q ss_conf 89678611001222100110168-7330111000123566764200133-22---10022344566542100----3444
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSELLG-VE---KNCNIFFRDVLRLGKIG----NISP 118 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~-~~---~~~~ii~~D~~~~~~~~----~~~~ 118 (189)
+-++||=++.|=|++==|-+..- .++|++||+|...++..|+=+..+. .+ .++++.-+|.+++++.. -.++
T Consensus 75 NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~~ 154 (284)
T TIGR00417 75 NPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEKK 154 (284)
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCCC
T ss_conf 88547899638884687887559816799997274789998882612105665888035898251798976152222121
Q ss_pred CCCCCCCHH--H--HHCCHHH-HHHHHHHCCCCCCCEEEEEECC
Q ss_conf 431015134--3--1000288-8988874488889749999817
Q gi|254780405|r 119 FQLVYLDPP--Y--GQGLAQQ-ALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 119 fDiIf~DPP--Y--~~~~~~~-~l~~l~~~~~L~~~gliiiE~~ 157 (189)
||+|..|=| = ++++.++ -.+.+.+ -|+++|+++.+.+
T Consensus 155 fDVIIvDstDPvGPa~~LF~~~Fy~~~~~--aL~~~Gv~v~Qss 196 (284)
T TIGR00417 155 FDVIIVDSTDPVGPAETLFTKEFYELLKK--ALNEDGVIVAQSS 196 (284)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECC
T ss_conf 44799727789565541021799999998--5299988998027
No 149
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=8.4e-05 Score=49.36 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCC
Q ss_conf 87763336455896786110012221001101687330111000123566764200133221002234-45665421003
Q gi|254780405|r 37 DILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF-RDVLRLGKIGN 115 (189)
Q Consensus 37 niL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~-~D~~~~~~~~~ 115 (189)
-.|. +|..++.|..+||++|-||.+.--||.|||++|++||-...-+.+=-+|=. ++.++. .|+..+.....
T Consensus 69 ~ale-~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~------rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 69 KALE-EFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP------RVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHH-HCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHCCC------CEEEEECCCHHHCCHHHC
T ss_conf 9999-648688997899826787629999987587479999703774378673598------479985278311898781
Q ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 44443101513431000288898887448888974999
Q gi|254780405|r 116 ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 116 ~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
.++-|++.+|=-| .....+|..+. .++++++.++
T Consensus 142 ~~~~d~~v~DvSF--ISL~~iLp~l~--~l~~~~~~~v 175 (245)
T COG1189 142 TEKPDLIVIDVSF--ISLKLILPALL--LLLKDGGDLV 175 (245)
T ss_pred CCCCCEEEEEEEH--HHHHHHHHHHH--HHCCCCCEEE
T ss_conf 7677847996423--31998889999--7427886389
No 150
>KOG0820 consensus
Probab=97.62 E-value=1.8e-05 Score=53.36 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=65.1
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
..-.+|+.+-|||.+.---|-.| ++|+++|+|+..+.-+++-.+....+++.+++.+|+++. ....||++..+-|
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~----d~P~fd~cVsNlP 132 (315)
T KOG0820 58 PTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT----DLPRFDGCVSNLP 132 (315)
T ss_pred CCCEEEEECCCCCHHHHHHHHHC-CEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC----CCCCCCEEECCCC
T ss_conf 98779995798778999999720-848999408078999999866998656046885031257----8851031122698
Q ss_pred HHH
Q ss_conf 310
Q gi|254780405|r 128 YGQ 130 (189)
Q Consensus 128 Y~~ 130 (189)
|..
T Consensus 133 yqI 135 (315)
T KOG0820 133 YQI 135 (315)
T ss_pred CCC
T ss_conf 533
No 151
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00017 Score=47.50 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8886778589999999877633364558967861100122210011016--87330111000123566764200133221
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEK 98 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~ 98 (189)
+.-+||..+.+ . ..+.. .-.++.||+||+|... |-|-| ....++.+|-|+..+..+++-+ .
T Consensus 13 ~eRtRPa~dLl--------a-~Vp~~-~~~~v~DLGCGpGnsT-elL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p 75 (257)
T COG4106 13 DERTRPARDLL--------A-RVPLE-RPRRVVDLGCGPGNST-ELLARRWPDAVITGIDSSPAMLAKAAQRL------P 75 (257)
T ss_pred HHCCCCHHHHH--------H-HCCCC-CCCEEEECCCCCCHHH-HHHHHHCCCCEEEECCCCHHHHHHHHHHC------C
T ss_conf 75157388998--------6-47866-6410345577887788-99998688886760469999999999748------9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 0022344566542100344443101513431-000288898887448888974999981778
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDPPYG-QGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
++++..+|+..|. ...++|++|.+.=+. -....+++..+.. .|.|+|.+.++.+.+
T Consensus 76 ~~~f~~aDl~~w~---p~~~~dllfaNAvlqWlpdH~~ll~rL~~--~L~Pgg~LAVQmPdN 132 (257)
T COG4106 76 DATFEEADLRTWK---PEQPTDLLFANAVLQWLPDHPELLPRLVS--QLAPGGVLAVQMPDN 132 (257)
T ss_pred CCCEECCCHHHCC---CCCCCCHHHHHHHHHHCCCCHHHHHHHHH--HHCCCCEEEEECCCC
T ss_conf 9732105275449---98763303344366443640899999998--508885699978876
No 152
>KOG4300 consensus
Probab=97.60 E-value=0.00011 Score=48.65 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHH
Q ss_conf 5899999998776333645589678611001222-1001101687330111000123566764200133221002-2344
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGS-VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCN-IFFR 105 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~-lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~-ii~~ 105 (189)
.+.-|+-||+=+.. +-..-....+|+++||||+ +-+--.+++. +||++|-+++.-+++.+-+....- .+++ .+.+
T Consensus 57 ~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva 133 (252)
T KOG4300 57 ADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVA 133 (252)
T ss_pred HHHHHHHHHHHHHH-HHCCCCCCCEEEECCCCCCCCCCCCCCCCC-EEEEECCCHHHHHHHHHHHHHCCC-CCEEEEEEE
T ss_conf 99999999852687-734357513699614688885355578885-689867848799999988864257-205777850
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEE-EECCCCC
Q ss_conf 5665421003444431015134310002888988874-48888974999-9817788
Q gi|254780405|r 106 DVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVI-IEEYAGT 160 (189)
Q Consensus 106 D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~glii-iE~~~~~ 160 (189)
+..++.+. ...++|.|... +..-..++..+.|.+ .++|+|+|.++ +||.+.+
T Consensus 134 ~ge~l~~l-~d~s~DtVV~T--lvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300 134 DGENLPQL-ADGSYDTVVCT--LVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CHHCCCCC-CCCCEEEEEEE--EEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 52107421-36771157778--88720577999999988750889589997212442
No 153
>KOG1122 consensus
Probab=97.59 E-value=6e-05 Score=50.21 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=93.7
Q ss_pred EEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHH
Q ss_conf 4108867443788886778589999999877633-------364558967861100122210--0110168733011100
Q gi|254780405|r 9 GKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHV-------YPVFLDSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDN 79 (189)
Q Consensus 9 G~~kg~~l~~~~~~~~RPt~~~vrealFniL~~~-------~~~~~~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~ 79 (189)
|+|.+--+..-.+...=|++.-..+... +||+. .-.=-.|-++||+||--|.=. |.||..+-..+++.|.
T Consensus 196 ~~ws~vgl~v~~s~vpigat~e~lag~~-~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~ 274 (460)
T KOG1122 196 GKWSKVGLVVFDSVVPIGATPEYLAGHY-MLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDS 274 (460)
T ss_pred CCCCCCEEEEECCCCCCCCCHHHCCCCE-EECCCCCCCEEEECCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 4000420899537311577533235512-422676235245207998871121210799507789998727746996135
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-CC------------------HHHHHH--
Q ss_conf 012356676420013322100223445665421003444431015134310-00------------------288898--
Q gi|254780405|r 80 NSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ-GL------------------AQQALA-- 138 (189)
Q Consensus 80 ~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~-~~------------------~~~~l~-- 138 (189)
+...++.++.|+..+++. ++.+.+.|..++........||-|.+|.|-.- +. +..+-.
T Consensus 275 n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~L 353 (460)
T KOG1122 275 NENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQREL 353 (460)
T ss_pred CHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 437799999889974877-4489736763255333676423145348777775554551013301299998727999999
Q ss_pred HHHHCCCCCCCEEEEEE
Q ss_conf 88744888897499998
Q gi|254780405|r 139 IIDKEGWLEPNALVIIE 155 (189)
Q Consensus 139 ~l~~~~~L~~~gliiiE 155 (189)
++..-++++++|+++..
T Consensus 354 llsAi~lv~~GGvLVYS 370 (460)
T KOG1122 354 LLSAIDLVKAGGVLVYS 370 (460)
T ss_pred HHHHHHHCCCCCEEEEE
T ss_conf 99987311577089998
No 154
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=97.59 E-value=2.4e-05 Score=52.53 Aligned_cols=106 Identities=15% Similarity=0.275 Sum_probs=75.3
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHH
Q ss_conf 99877633364558967861100122210011016873---301110001235667642001-----3322100223445
Q gi|254780405|r 35 LFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCH---YVLFVDNNSESIRLIRRNSEL-----LGVEKNCNIFFRD 106 (189)
Q Consensus 35 lFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~---~v~~vE~~~~a~~~lk~N~~~-----~~~~~~~~ii~~D 106 (189)
.-..|+++. --+.+|||++||||-.+. ++|.=.. .|+.||.=+.-..-+++++++ |+. +|+.++.+|
T Consensus 72 m~~yL~nhL---~~~~~vLeiG~GSGY~aa-vlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~-~NV~v~~GD 146 (228)
T TIGR00080 72 MTEYLENHL---KPGAKVLEIGTGSGYQAA-VLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGL-DNVIVIEGD 146 (228)
T ss_pred HHHHHHHHC---CCCCEEEEECCCCHHHHH-HHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 999888521---403556650478558999-999987139718998535788999998765431444068-865899778
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 665421003444431015134310002888988874488889749999
Q gi|254780405|r 107 VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 107 ~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
-.+ -+....|||-|+.-.= ..+.-+.+++.| ++||.+++
T Consensus 147 G~~--G~~~~APYd~I~~~AA-~k~iP~AL~~QL------~eGG~L~~ 185 (228)
T TIGR00080 147 GRQ--GWEEKAPYDAILVTAA-AKEIPKALIDQL------EEGGILVL 185 (228)
T ss_pred CCC--CHHHCCCCCEEEEECC-CCCCCHHHHHHH------HHCCEEEE
T ss_conf 865--7102488352775237-898765789999------72898862
No 155
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00019 Score=47.25 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 58999999987763336455896786110012221001-10168733011100012356676420013322100223445
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
.+....-+-+.|.........+++++|++||.|-=|+- |+.+-..+++.+|-..+-+..+++-.+.++++ |++++++.
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~R 125 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGR 125 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCC-CEEEEHHH
T ss_conf 89999999998646650256688799857999973176888566881899716750799999999985999-74986312
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 66542100344443101513431000288898887448888974999
Q gi|254780405|r 107 VLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 107 ~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
+.++.+.... ||+|-+= +-.....+.+... .+++++|.++
T Consensus 126 aE~~~~~~~~--~D~vtsR---Ava~L~~l~e~~~--pllk~~g~~~ 165 (215)
T COG0357 126 AEEFGQEKKQ--YDVVTSR---AVASLNVLLELCL--PLLKVGGGFL 165 (215)
T ss_pred HHHCCCCCCC--CCEEEEE---EECCHHHHHHHHH--HHCCCCCCCH
T ss_conf 7660144665--7589854---2025688999999--8434688320
No 156
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.58 E-value=0.00024 Score=46.67 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=90.0
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHC----------CCCC--CCCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHH
Q ss_conf 7443788886778589999999877633----------3645--5896786110012221001-1016873301110001
Q gi|254780405|r 15 LLHTPQNRSIRPSDSRTKKALFDILTHV----------YPVF--LDSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNS 81 (189)
Q Consensus 15 ~l~~~~~~~~RPt~~~vrealFniL~~~----------~~~~--~~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~ 81 (189)
.+.+--...-||++..-++++=+.+... +... -+...+||++||.|..-++ |.+.--...+++|...
T Consensus 9 ~~rsf~rr~gr~lt~~q~~~l~~~~~~~~i~~~~~~~~~~~~F~~~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~ 88 (229)
T PRK00121 9 RIRSFVRRRGKPLSPGQQEALDELLPRLGLNPEEAPPDWDELFGNDAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHE 88 (229)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEH
T ss_conf 72223057899799999999997453404684224679899729999439996158969999999868888689999616
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCC---CCCCCH-HHHH-----CCHHHHHHHHHHCCCCCCCEE
Q ss_conf 23566764200133221002234456654210-0344443---101513-4310-----002888988874488889749
Q gi|254780405|r 82 ESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI-GNISPFQ---LVYLDP-PYGQ-----GLAQQALAIIDKEGWLEPNAL 151 (189)
Q Consensus 82 ~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~-~~~~~fD---iIf~DP-PY~~-----~~~~~~l~~l~~~~~L~~~gl 151 (189)
..+..+.+.++..+++ |+.++++||..++.. .....+| +.|-|| |=.. -.-+..++.+.. .|+++|.
T Consensus 89 ~gv~~~~~~~~~~~l~-Ni~i~~~da~~~l~~~~~~~s~~~i~i~FPDPWpKkrH~KRRli~~~fl~~~~~--~Lk~~G~ 165 (229)
T PRK00121 89 PGVAKALKKIEEAGLK-NLRLLCGDAVEVLEHFLPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLELYAR--VLKPGGE 165 (229)
T ss_pred HHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCE
T ss_conf 9999999999982998-389883478999997146454140467179999763202401289999999998--5799988
Q ss_pred EEEEC
Q ss_conf 99981
Q gi|254780405|r 152 VIIEE 156 (189)
Q Consensus 152 iiiE~ 156 (189)
+.+-+
T Consensus 166 i~~~T 170 (229)
T PRK00121 166 FHFAT 170 (229)
T ss_pred EEEEE
T ss_conf 99981
No 157
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=97.47 E-value=0.0001 Score=48.83 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=74.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
...+.||.+||-|-++=..|+.=+.+|..||..++-++.+++++..-. ..-.++++.-..+|.+. ..+||+|.+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~-~~~~~~~~~gLQdf~P~--~~~YD~IW~Q-- 129 (217)
T pfam05891 55 RHLVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEK-KKVGNFFCVGLQDFTPE--EGRYDLIWIQ-- 129 (217)
T ss_pred CCCEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCC--CCEEEEEEEH--
T ss_conf 632665426763611266788754813575444999999999874037-97653897361016899--9817699805--
Q ss_pred HHHC--CHHHHHHHHHHC-CCCCCCEEEEEE
Q ss_conf 3100--028889888744-888897499998
Q gi|254780405|r 128 YGQG--LAQQALAIIDKE-GWLEPNALVIIE 155 (189)
Q Consensus 128 Y~~~--~~~~~l~~l~~~-~~L~~~gliiiE 155 (189)
+-.+ -.+++++.+..+ ..|+++|+|++-
T Consensus 130 W~~ghLtD~dlv~Fl~RCk~~L~~~G~IvvK 160 (217)
T pfam05891 130 WCIGHLTDEDLVAFLKRCKSGLKPNGIIVIK 160 (217)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8452188899999999999847898649984
No 158
>PRK05785 hypothetical protein; Provisional
Probab=97.46 E-value=9e-05 Score=49.18 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=45.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+.++||++||||-++.+ +. +..+|+.+|.+++.++..+... +-+++|+.++ + .....||.|.+
T Consensus 51 ~~~~vLDva~GTGd~a~~-l~-~~~~v~~~D~s~~ML~~a~~~~---------~~v~~~ae~L-P-f~d~sFD~vt~ 114 (225)
T PRK05785 51 SPLKVLDAGAGPGNMAYH-LR-KIRYVVALDYTEEMLRLNLVAD---------DKVVGSFEAM-P-FRDKSFDLVMS 114 (225)
T ss_pred CCCEEEEECCCCHHHHHH-HH-CCCEEEEEECCHHHHHHHHHCC---------CCEEEHHHHC-C-CCCCCEEEEEE
T ss_conf 888289956884399999-63-4786999988999999876432---------1137318539-9-99882527763
No 159
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=97.38 E-value=0.00012 Score=48.50 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=71.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 888677858999999987763336455896786110012221001101-6873301110001235667642001332210
Q gi|254780405|r 21 NRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIRRNSELLGVEKN 99 (189)
Q Consensus 21 ~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~ 99 (189)
.-++--|=+-|+||+ + -++-+.+|||+||-|-=+|- || .| .-|.++|.|+.++..+.+-.++=++. +
T Consensus 55 Ky~~T~~Hs~v~eAv----k-----~v~PcKtLDLGCGqGrNsLy-Lsl~G-YDV~awD~n~~siA~v~~~k~~EnL~-n 122 (239)
T TIGR00477 55 KYELTATHSEVLEAV----K-----VVKPCKTLDLGCGQGRNSLY-LSLAG-YDVDAWDHNEASIASVEEIKEKENLD-N 122 (239)
T ss_pred HHHCCHHHHHHHHHH----H-----CCCCCCEEECCCCCCHHHHH-HHHHC-CCCEEECCCHHHHHHHHHHHHHHCCC-C
T ss_conf 010010347777555----0-----23798653268888537899-97616-84101216866887599888762671-1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 02234456654210034444310151343---10002888988874488889749
Q gi|254780405|r 100 CNIFFRDVLRLGKIGNISPFQLVYLDPPY---GQGLAQQALAIIDKEGWLEPNAL 151 (189)
Q Consensus 100 ~~ii~~D~~~~~~~~~~~~fDiIf~DPPY---~~~~~~~~l~~l~~~~~L~~~gl 151 (189)
+..++..+....-.+.||.||.-==+ ..+-.+.++..... .-++||.
T Consensus 123 ---l~t~~yDiNaa~~~e~YDFI~sTVVf~FL~a~rvP~iIanMq~--hT~pGGY 172 (239)
T TIGR00477 123 ---LRTDVYDINAAALDEDYDFILSTVVFMFLEAERVPEIIANMQE--HTKPGGY 172 (239)
T ss_pred ---HHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCCHHHHHHHHH--HCCCCCC
T ss_conf ---0046554335540127874210201221058877267886587--4679873
No 160
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=97.37 E-value=7.5e-05 Score=49.63 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCCCEEEECCCCCCCCHHHHHCC--C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 58967861100122210011016--8-73301110001235667642001332210022344566542100344443101
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSR--G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSr--G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
-+|...||+||||+--+| +|+. | ..+|...|.+...+++.++-++...+ .+++++++++.++. .....||.|-
T Consensus 44 ~~G~~~ldvCCGt~dW~~-~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~-~~~~l~hGnam~lP--~~~~~fdyvt 119 (231)
T TIGR02752 44 QKGKKALDVCCGTADWAI-ALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKL-SNVELVHGNAMELP--YDDNSFDYVT 119 (231)
T ss_pred HHCCHHHHHCCCCHHHHH-HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH-HHEEEECCCHHCCC--CCCCCCCEEE
T ss_conf 404121121037337888-9888617777167400358899999988875432-00222305200178--7766612577
Q ss_pred CCHHHHHCCHHHHHHHHHHC-CCCCCCEEEEEE
Q ss_conf 51343100028889888744-888897499998
Q gi|254780405|r 124 LDPPYGQGLAQQALAIIDKE-GWLEPNALVIIE 155 (189)
Q Consensus 124 ~DPPY~~~~~~~~l~~l~~~-~~L~~~gliiiE 155 (189)
+- |+....++.+..|.+. +..+|+|.+++=
T Consensus 120 iG--fGlrnvPdy~~vl~em~rv~kPGG~~~C~ 150 (231)
T TIGR02752 120 IG--FGLRNVPDYMTVLKEMARVVKPGGKVVCL 150 (231)
T ss_pred EC--CCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 52--55123026999999988862799717986
No 161
>PRK11524 putative methyltransferase; Provisional
Probab=97.37 E-value=7.3e-05 Score=49.70 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 896786110012221001101687330111000123566764200
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
+|-.|||.|||||+-++.|...| .+.+.+|+|++.++++++-++
T Consensus 208 egDlVLDPF~GSGTT~~aA~~lg-R~~IGiEi~~eY~~iA~~Ri~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINEEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHH
T ss_conf 99989957988868999999829-958999689999999999987
No 162
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=97.35 E-value=7.9e-05 Score=49.51 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHH--------CCC-----CCCHHHHHHHHHHHHHHHHHHCCCC-------CCCCHHHHHH
Q ss_conf 5589678611001222100110--------168-----7330111000123566764200133-------2210022344
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEAL--------SRG-----CHYVLFVDNNSESIRLIRRNSELLG-------VEKNCNIFFR 105 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEal--------SrG-----A~~v~~vE~~~~a~~~lk~N~~~~~-------~~~~~~ii~~ 105 (189)
+++...|+|.|||+|.|=+-+| +++ -..|.+.|+++.++..+.++++... ...+.+...+
T Consensus 31 nI~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di~~~~L~~~~~~~~~~~k~~F~~~~~~~~~~~~~ 110 (603)
T TIGR02987 31 NIEKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADIDKTLLERASKLLSELAKLLFALEISIILTNSLS 110 (603)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHH
T ss_conf 04154533575276499999999866430340232331110002314447999999988787666542377510011023
Q ss_pred HHHHHHHHCC----------------CCCCCCCCCCHHHH
Q ss_conf 5665421003----------------44443101513431
Q gi|254780405|r 106 DVLRLGKIGN----------------ISPFQLVYLDPPYG 129 (189)
Q Consensus 106 D~~~~~~~~~----------------~~~fDiIf~DPPY~ 129 (189)
|.+...+... .+-||+|.++|||+
T Consensus 111 ~~~~~~~~~~~~EYI~~~~~F~~EV~keGFD~~ItNPPy~ 150 (603)
T TIGR02987 111 DVFLLIEEYKEKEYIKLEDVFGDEVKKEGFDIVITNPPYK 150 (603)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEECCCCC
T ss_conf 4445455420102225450155320015741799778885
No 163
>PRK11524 putative methyltransferase; Provisional
Probab=97.34 E-value=7.8e-05 Score=49.56 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC----------HHHHHH----HHHH-CCCCCCCEEEEEECC
Q ss_conf 10022344566542100344443101513431000----------288898----8874-488889749999817
Q gi|254780405|r 98 KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL----------AQQALA----IIDK-EGWLEPNALVIIEEY 157 (189)
Q Consensus 98 ~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~----------~~~~l~----~l~~-~~~L~~~gliiiE~~ 157 (189)
+..+++++|+++.++......+|+|+.||||+.+. .++.++ .+.+ ..+|+++|.+++-..
T Consensus 7 ~~~kIy~gDcle~lk~lpd~SIDLIiTDPPYn~~k~y~~~~d~~~~~~y~~~~~~~l~e~~RvLk~~Gsi~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEKWKEDLFIDWLYEVIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999899531899985385577387998999988875787467779899999999999999998340574599628
No 164
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=97.33 E-value=0.0004 Score=45.36 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC------
Q ss_conf 86778589999999877633364558967861100122210011016873301110001235667642001332------
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGV------ 96 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~------ 96 (189)
..|---.-||..|-+--.......-.+.+||||+||-|.==.--...+.+.++.+|+++.+++-+++=...+..
T Consensus 38 ~LR~FNNwVKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~ 117 (327)
T pfam03291 38 QLRNFNNWIKSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKY 117 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 78873189999999999887514688987998368664457889747986899966899999999999998642114444
Q ss_pred ---CCCHHHHHHHHHHH-H-HH--CCCCCCCCCCCCH--HHH---HCCHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf ---21002234456654-2-10--0344443101513--431---00028889888744888897499998177
Q gi|254780405|r 97 ---EKNCNIFFRDVLRL-G-KI--GNISPFQLVYLDP--PYG---QGLAQQALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 97 ---~~~~~ii~~D~~~~-~-~~--~~~~~fDiIf~DP--PY~---~~~~~~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
.-.+..+.+|++.- + +. ....+||+|=+-= =|. .......|..+.+ .|++||.+|.-++.
T Consensus 118 ~~~~f~~~f~~~D~~~~~l~~~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~--~Lk~GG~FIGT~~d 189 (327)
T pfam03291 118 YKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAE--LLASGGKFIGTTPD 189 (327)
T ss_pred CCCCCCEEEEECCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCCEEEEEECC
T ss_conf 5667500123156215678775357788503775178789876489999999999998--60589889999667
No 165
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.32 E-value=0.00012 Score=48.40 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC---CC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 858999999987763336455896786110012221001101---68--7330111000123566764200133221002
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS---RG--CHYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS---rG--A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
|+.-|=+-+--+|.+. ...++.|..||||++=++|.. +- -...+..|.++.....++.|.-.-+.+.++.
T Consensus 170 TP~~v~~liv~~l~~~-----~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 170 TPREVSELIVELLDPE-----PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred CHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8799999999975776-----56523473354037999999999751555049989566889999996116627874223
Q ss_pred HHHHHHHHHHHH---CCCCCCCCCCCCHHHH
Q ss_conf 234456654210---0344443101513431
Q gi|254780405|r 102 IFFRDVLRLGKI---GNISPFQLVYLDPPYG 129 (189)
Q Consensus 102 ii~~D~~~~~~~---~~~~~fDiIf~DPPY~ 129 (189)
+..+|...-... ....+||.|.++|||.
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 4334423687332346655501686579955
No 166
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=97.30 E-value=8.3e-05 Score=49.38 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=37.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5896786110012221001101687330111000123566764
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
-+|..|||.|||||+-++.|...| .+.+.+|+|++.++++++
T Consensus 180 ~~gd~VlDpF~GSGTT~~Aa~~l~-R~~iG~E~~~~y~~~a~~ 221 (221)
T pfam01555 180 NPGDIVLDPFAGSGTTGAAAKELG-RNFIGIEIEEEYVEIAKE 221 (221)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHC-CEEEEEECCHHHHHHHHC
T ss_conf 997999989998279999999829-959999589999999619
No 167
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.28 E-value=6.6e-05 Score=49.96 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 8867785899999998776333645589678611001-222100110168733011100012356676420013322100
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAG-TGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaG-sG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
..+-|-+..-|-++.+. ..+++|+.++=++-- --++++ ||++=++++.-||+|...++.+.+-++.++. +++
T Consensus 131 gfvTpEttv~Rv~lm~~-----RGDL~gK~I~vvGDDDLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~i 203 (354)
T COG1568 131 GFVTPETTVSRVALMYS-----RGDLEGKEIFVVGDDDLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNI 203 (354)
T ss_pred CCCCCCCEEEEEEEECC-----CCCCCCCEEEEECCCHHHHHHH-HHCCCCCEEEEEECHHHHHHHHHHHHHHHCC-CCH
T ss_conf 64575310134432110-----4675787689970750657889-8638873379983158999999999998483-315
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 22344566542100344443101513431
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYG 129 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~ 129 (189)
+++.-|+.+-++..-..+||++.-||||-
T Consensus 204 e~~~~Dlr~plpe~~~~kFDvfiTDPpeT 232 (354)
T COG1568 204 EAFVFDLRNPLPEDLKRKFDVFITDPPET 232 (354)
T ss_pred HHEEEHHCCCCHHHHHHHCCEEECCCHHH
T ss_conf 54030510458398885077643596335
No 168
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=97.26 E-value=0.00014 Score=48.04 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=68.4
Q ss_pred EEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCHHHH
Q ss_conf 86110012221001101687330111000123566764200133221002234456654210--0344443101513431
Q gi|254780405|r 52 MLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI--GNISPFQLVYLDPPYG 129 (189)
Q Consensus 52 vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~DPPY~ 129 (189)
=|+.|+||--++- .+-|+..+..+.|..++-...+++|.. ...++++.++|.+..++. ...++=-+|++||||+
T Consensus 92 ~l~~YpGSP~lA~-~llR~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE 167 (279)
T COG2961 92 GLRYYPGSPLLAR-QLLREQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFE 167 (279)
T ss_pred CCCCCCCCHHHHH-HHCCHHCEEEEEECCCCHHHHHHHHHC---CCCCEEEEECCCHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 8045899989999-871401003320048457999997627---784147883471888862189977625899589866
Q ss_pred H-CCHHHHHHHHHHC
Q ss_conf 0-0028889888744
Q gi|254780405|r 130 Q-GLAQQALAIIDKE 143 (189)
Q Consensus 130 ~-~~~~~~l~~l~~~ 143 (189)
. +.++.+++.|.+.
T Consensus 168 ~~~eY~rvv~~l~~~ 182 (279)
T COG2961 168 LKDEYQRVVEALAEA 182 (279)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 621799999999999
No 169
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=97.23 E-value=8.1e-05 Score=49.44 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=54.8
Q ss_pred EEECCCCCCC--CHHHHHC----CCCCCHHHHHH--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-----CCCC
Q ss_conf 8611001222--1001101----68733011100--01235667642001332210022344566542100-----3444
Q gi|254780405|r 52 MLNIFAGTGS--VGFEALS----RGCHYVLFVDN--NSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG-----NISP 118 (189)
Q Consensus 52 vlDlfaGsG~--lgiEalS----rGA~~v~~vE~--~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~-----~~~~ 118 (189)
+.|||||-|. +|||..- -+.+-|.+.|+ |+.|+++-+.|.. +..++..+|+.+.-... ....
T Consensus 1 ~idLFaGiGG~rlGfe~~g~~l~~~~~~V~~sE~PRdk~A~~tY~~Nf~-----~~~~~~~~DI~~i~~~~~~~~~~~Pd 75 (425)
T TIGR00675 1 VIDLFAGIGGIRLGFEQAGKELTVAFKCVFASEIPRDKYAQKTYEANFG-----NDEKVPFGDITKISPSDLLRHIAIPD 75 (425)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCC-----CCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9454255135789999741014111378872016687789999997647-----88420677633366011500124886
Q ss_pred CCCCCCCHH
Q ss_conf 431015134
Q gi|254780405|r 119 FQLVYLDPP 127 (189)
Q Consensus 119 fDiIf~DPP 127 (189)
||++..-||
T Consensus 76 ~D~L~gGFP 84 (425)
T TIGR00675 76 FDILLGGFP 84 (425)
T ss_pred EEEEECCCC
T ss_conf 789963899
No 170
>PRK13699 putative methylase; Provisional
Probab=97.21 E-value=0.00019 Score=47.19 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 58967861100122210011016873301110001235667642001
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
-+|-.|||.|+|||+-++.|...| .+.+.+|+|++.++++++=++.
T Consensus 162 ~~gdlVLDPF~GSGTT~vAA~~lg-R~fIGiEi~~~Y~~ia~~Rl~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEECCCCCCHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHH
T ss_conf 999999977998758999999819-9489996899999999999999
No 171
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=97.18 E-value=0.00028 Score=46.27 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=74.1
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9877633364558967861100122210---0110168733011100012356676420013322100223445665421
Q gi|254780405|r 36 FDILTHVYPVFLDSTRMLNIFAGTGSVG---FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK 112 (189)
Q Consensus 36 FniL~~~~~~~~~~~~vlDlfaGsG~lg---iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~ 112 (189)
.-+|.+. .+=+|||+||--|.=+ +|-+.. -..|+++|.+...++-++.|++.+|+. -+++...|+.+--.
T Consensus 264 a~~L~P~-----~~E~iLD~CAAPGGKttHI~EL~~~-~g~v~a~D~~~~rl~~~~~~~~RLGl~-~i~~~~~~~~~~~~ 336 (487)
T TIGR00563 264 ATLLDPK-----NEETILDACAAPGGKTTHIAELMPD-QGQVVALDLHKHRLKRVKENLDRLGLT-IIKVEEVDGDKAGP 336 (487)
T ss_pred HHHHCCC-----CCCEEEEEECCCCCHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHCCE-EEEEEEECCCCCCC
T ss_conf 9973889-----8874773114845704767742479-720898862125788999999861883-78877202567766
Q ss_pred H---CCCC----CCCCCCCCHHH--------------HH--CCH-------HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 0---0344----44310151343--------------10--002-------888988874488889749999
Q gi|254780405|r 113 I---GNIS----PFQLVYLDPPY--------------GQ--GLA-------QQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 113 ~---~~~~----~fDiIf~DPPY--------------~~--~~~-------~~~l~~l~~~~~L~~~gliii 154 (189)
. ...+ +||=|.+|-|= .. ... ..+|..|.. .+|+||.+++
T Consensus 337 ~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP--~vK~GGtLvY 406 (487)
T TIGR00563 337 KEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAP--LVKKGGTLVY 406 (487)
T ss_pred CCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHCCCCEEEE
T ss_conf 544452010233314215607877443300178755566856517899999999998856--5357975888
No 172
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.17 E-value=0.00025 Score=46.50 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCCCCCHHHHHHHHHHH-HHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88677858999999987-76333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 22 RSIRPSDSRTKKALFDI-LTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 22 ~~~RPt~~~vrealFni-L~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
..+|+--.+-+.++--. |.. -.-.+.|+++|+.|.++-+...| +...+++|.++.|++.+++-+. +. .++
T Consensus 21 ~~s~wYE~~r~~~~l~aaLp~-----~ry~~alE~GCa~G~lT~~LA~R-CdrLla~Dvs~~Av~~Ar~Rla--~~-~hV 91 (201)
T pfam05401 21 LDSNPFEQERHTQMLRLSLAQ-----GTIANALEVGCAAGAFTERLAPY-CQRLTVIDVMPEAIARARLRMK--KW-SHI 91 (201)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-----HHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHC--CC-CCC
T ss_conf 877687899999999986783-----43300204356624878999998-7467321362999999999855--79-982
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHCCHHH---HHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 22344566542100344443101513-431000288---8988874488889749999817788
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDP-PYGQGLAQQ---ALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DP-PY~~~~~~~---~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
++.+.|+.+. ....+||+|.+-- =|--+...+ ++..+. ..|.|+|-+++-|..+.
T Consensus 92 ~v~~~~vp~~---wP~~~FDLIV~SEVlYYL~d~a~lr~~~~~~v--~~LaP~G~Lvfgsarda 150 (201)
T pfam05401 92 SWIVSDVQQF---STNELFDLIVVAEVLYYLGDVAEMRGAVRNLV--SMLAPDGQLVFGSARDA 150 (201)
T ss_pred EEEECCCCCC---CCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHH--HHHCCCCEEEEECCCCC
T ss_conf 8982566665---99888627975147786187999999999999--97189965997304510
No 173
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=97.16 E-value=0.00046 Score=44.98 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=78.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC----
Q ss_conf 558967861100122210011016873----301110001235667642001332210022344566542100344----
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCH----YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS---- 117 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~----~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~---- 117 (189)
.+-+..|-||+|-+|+..| |+-|-.. ++++||++...++-+++.++..+.+-.+++.|.|..+.- ..+..
T Consensus 59 slp~~~vYDLGCS~G~~~l-~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~-~~~AS~~~L 136 (247)
T TIGR00740 59 SLPKPLVYDLGCSTGAATL-SLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMDIREVE-IKNASMVVL 136 (247)
T ss_pred CCCCCCEEECCCCHHHHHH-HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH-HHHHHHHHH
T ss_conf 1688741223343235776-65304687853798841888899999999987424788232010245666-655468878
Q ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 44310151343100028889888744888897499998
Q gi|254780405|r 118 PFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 118 ~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
.|-+=|+.|- .-+.+|++|.+. |+++|.+++-
T Consensus 137 ~F~LQFl~P~----~R~~LL~KIY~~--L~~nGvL~ls 168 (247)
T TIGR00740 137 NFTLQFLRPE----EREALLKKIYNG--LNPNGVLVLS 168 (247)
T ss_pred HHHHHCCCCH----HHHHHHHHHHHH--CCCCCEEEEE
T ss_conf 8776047823----479999998741--0778668863
No 174
>PRK13699 putative methylase; Provisional
Probab=97.09 E-value=0.00014 Score=47.99 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC------------CHHHHHH-HHH-HCCCCCCCEEEEEEC
Q ss_conf 2234456654210034444310151343100------------0288898-887-448888974999981
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDPPYGQG------------LAQQALA-IID-KEGWLEPNALVIIEE 156 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~------------~~~~~l~-~l~-~~~~L~~~gliiiE~ 156 (189)
+++++|++++++......+|+|+.||||..+ ...+-+. .+. -.++|+++|.++.-+
T Consensus 3 kii~GDcle~l~~lpd~SVDliiTDPPY~~g~~~~~~~~~~~d~~~ew~~~~~~e~~Rvlk~~g~~~~~~ 72 (227)
T PRK13699 3 RFILGNCVDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred CEEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 4433019999952888772979989899889878899744576208999999999999956881699993
No 175
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=97.08 E-value=0.00073 Score=43.79 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-----HHHCCC
Q ss_conf 36455896786110012221001101687-330111000123566764200133221002234456654-----210034
Q gi|254780405|r 43 YPVFLDSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL-----GKIGNI 116 (189)
Q Consensus 43 ~~~~~~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~-----~~~~~~ 116 (189)
+.....+.+||||+|+.|+..=-|+.||+ .+|++||..+.. ....+..+++|..+. +.....
T Consensus 16 ~~l~~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~------------~~~~~~~i~gDi~~~~~~~~i~~~~~ 83 (176)
T pfam01728 16 FGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK------------PIQGVTFLRGDITDPETLEKLLELLP 83 (176)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC------------CCCCCEEECCCCCCHHHHHHHHHHCC
T ss_conf 698879999999689997699999985668739999734465------------67784565167668789999999739
Q ss_pred CCCCCCCCCH-HHHHC--C------HHHHHHHH-HHCCCCCCCEEEEEE
Q ss_conf 4443101513-43100--0------28889888-744888897499998
Q gi|254780405|r 117 SPFQLVYLDP-PYGQG--L------AQQALAII-DKEGWLEPNALVIIE 155 (189)
Q Consensus 117 ~~fDiIf~DP-PY~~~--~------~~~~l~~l-~~~~~L~~~gliiiE 155 (189)
.++|+|..|- |--.+ . ..-.+..+ ....+|+++|.+++-
T Consensus 84 ~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K 132 (176)
T pfam01728 84 GKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVK 132 (176)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9846897336656567733478999999999999999982437639999
No 176
>KOG2920 consensus
Probab=97.06 E-value=0.00031 Score=46.03 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=66.3
Q ss_pred HHHHHHHHC--CCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999877633--3645589678611001222100110168733011100012356676-4200133221002234456654
Q gi|254780405|r 34 ALFDILTHV--YPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIR-RNSELLGVEKNCNIFFRDVLRL 110 (189)
Q Consensus 34 alFniL~~~--~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk-~N~~~~~~~~~~~ii~~D~~~~ 110 (189)
++++-+... ....+.|++||||+||+|--||.|.-.|+..++|.|.+.+.++... -|+...- .....+.|...+
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~---~~~~~~~e~~~~ 176 (282)
T KOG2920 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNS---HAGVEEKENHKV 176 (282)
T ss_pred HHHHHHHHHHHHHEEECCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCHHHEEEECCCCEECCH---HHHHHHHHCCCC
T ss_conf 99999998753336744755686378645641666640353233473351124652146533020---010234413652
Q ss_pred HHH----------CCC--CCCCCCCCC-HHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 210----------034--444310151-3431000288898887448888974999
Q gi|254780405|r 111 GKI----------GNI--SPFQLVYLD-PPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 111 ~~~----------~~~--~~fDiIf~D-PPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
... ... .+||+|..- -+|.....+. +..+....+++++++++
T Consensus 177 ~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~-~~~~~r~~l~~~D~~~~ 231 (282)
T KOG2920 177 DEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAV-LYLLHRPCLLKTDGVFY 231 (282)
T ss_pred EECCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCHHHH-HHHHHHHHCCCCCCHHH
T ss_conf 12123433220100003311122110355517630455-67666652277650256
No 177
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=97.00 E-value=0.00032 Score=45.95 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 589999999877633364558967861100122210011016873301110001235667642001332210022
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
-.+..|+ |.+ |..+..|+.+||++|=||.+.-=||.+||++|++||....-+++=-+..+...+-.++.+
T Consensus 62 G~KL~~~----L~~-F~~~vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~ 131 (240)
T TIGR00478 62 GEKLKEA----LEE-FEVDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNI 131 (240)
T ss_pred HHHHHHH----CCC-CCEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCCC
T ss_conf 5899985----354-331337868997056730489999870584677786032133432363662689645787
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.99 E-value=0.00092 Score=43.18 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCEEEECCCCCCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCC---CCC
Q ss_conf 9678611001222100110-16873301110001235667642001332210022344566542100344-443---101
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEAL-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNIS-PFQ---LVY 123 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEal-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~-~fD---iIf 123 (189)
...+||++||+|..-++-+ -.--...+.||.....+..+.+-+...++. |+.+++.||..++...... ..| +-|
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHCCCCCCEEEEEEEC
T ss_conf 96699968889878999998789877899997348999999999982998-46998077999997358988565799979
Q ss_pred CCHHHHH------CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 5134310------0028889888744888897499998
Q gi|254780405|r 124 LDPPYGQ------GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 124 ~DPPY~~------~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
-||=... -.....++.++. .|+++|.+.+-
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~--~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYAR--KLKPGGVLHFA 163 (227)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCEEEEE
T ss_conf 9999876643321478899999999--72689789997
No 179
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=96.96 E-value=0.0016 Score=41.73 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45589678611001222100110168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
..+.|+.|+|++||+|-.=..-+..||+.++.+|--.=...--..-.+.++-+.++...---+.++-. .....||.||+
T Consensus 118 ~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~-~~pnAFD~vFs 196 (316)
T TIGR00452 118 SPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQE-LKPNAFDTVFS 196 (316)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-CCCCCCEEEEE
T ss_conf 65457778983368706889776207827874365789999999999872423557540367022232-07641203122
Q ss_pred C-HHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 1-3431000288898887448888974999981
Q gi|254780405|r 125 D-PPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 125 D-PPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
= ==|.-..--+.|..|.. -|..+|=+++|.
T Consensus 197 ~GVLYHRkSPLe~L~~L~~--~L~~~GELVL~T 227 (316)
T TIGR00452 197 LGVLYHRKSPLEHLKQLKD--QLVKKGELVLET 227 (316)
T ss_pred CCHHHCCCCCHHHHHHHHH--HHHHCCCEEEEE
T ss_conf 0202115570899999999--987579358653
No 180
>PRK00536 speE spermidine synthase; Provisional
Probab=96.90 E-value=0.0015 Score=41.94 Aligned_cols=129 Identities=10% Similarity=0.006 Sum_probs=81.7
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHH-HHHHHCC-CCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 867443788886778589999999-8776333-64558967861100122210011016873301110001235667642
Q gi|254780405|r 13 RRLLHTPQNRSIRPSDSRTKKALF-DILTHVY-PVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 13 g~~l~~~~~~~~RPt~~~vrealF-niL~~~~-~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N 90 (189)
||-| +.++. + ++++- |-+. -||.|-- -..-+-++||=+++|-|...=|.|.... +|++||+|...++.+++-
T Consensus 40 Gkvl-vLDG~-i--~t~~~-ef~YhEMl~Hvpl~~Hp~Pk~VLIIGGGDGG~~REvlKH~~-~v~~VEID~~Vv~~sk~y 113 (262)
T PRK00536 40 GEIA-MLNKQ-L--LFKNF-LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISF 113 (262)
T ss_pred CEEE-EEECE-E--EEECH-HHHHHHHHHCHHHHCCCCCCEEEEECCCCHHHHHHHHCCCC-EEEEEEECHHHHHHHHHH
T ss_conf 3179-98063-8--98600-67888887530232189978799986875599999872897-669999678999999997
Q ss_pred HCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 001332---21002234456654210034444310151343100028889888744888897499998177
Q gi|254780405|r 91 SELLGV---EKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 91 ~~~~~~---~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
+-.... ..+++++ .++.+. ..++||+|.+|--+..+.++.+. +.|+++|+++.+...
T Consensus 114 lP~~~~~~~dpr~~~~----~~~~~~-~~~~fDvIIvDsl~~~~~~~~l~------~~L~~~Gi~v~Q~es 173 (262)
T PRK00536 114 FPHFHEVKNNKNFTHA----KQLLDL-DIKKYDLIICLQEPDIHKIDGLK------RMLKEDGVFISVAKH 173 (262)
T ss_pred CHHHHHHHCCCCEEHH----HHHHHH-CCCCCCEEEECCCCCCCHHHHHH------HHHCCCCEEEECCCC
T ss_conf 8565654139961139----998761-54766889988999805499999------985899899983897
No 181
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.86 E-value=0.0013 Score=42.36 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHC--CCC---C-CCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 967861100122210011016-87330111000123566764200--133---2-2100223445665421003444431
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSE--LLG---V-EKNCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~--~~~---~-~~~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
--++|=|+.|-|--.=|-+.- |..+++.||.||+.++..++|.- ..| + +.+++++..|+++|++... +.||.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~-~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA-DMFDV 368 (508)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHC-CCCCE
T ss_conf 42699972875187999971888552789743889998730026766603677668756999654788997413-45557
Q ss_pred CCCCHHHHH-----CCHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 015134310-----0028889888744888897499998177
Q gi|254780405|r 122 VYLDPPYGQ-----GLAQQALAIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 122 If~DPPY~~-----~~~~~~l~~l~~~~~L~~~gliiiE~~~ 158 (189)
|.+|=|=-. ..|..-+-.+.+. .++++|+++++..+
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~-~l~e~Gl~VvQags 409 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSR-HLAETGLMVVQAGS 409 (508)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCC
T ss_conf 999689989951343210899999997-33757549995488
No 182
>KOG2198 consensus
Probab=96.86 E-value=0.0011 Score=42.64 Aligned_cols=107 Identities=20% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCCH---HHHHCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-----C--C
Q ss_conf 8967861100122210---011016873--30111000123566764200133221002234456654210-----0--3
Q gi|254780405|r 48 DSTRMLNIFAGTGSVG---FEALSRGCH--YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI-----G--N 115 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lg---iEalSrGA~--~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~-----~--~ 115 (189)
.|-+|||+||--|+=+ |||+..+.. .|++.|.|...+..+.+-++.+.- .+..+.+.|+..+... . .
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCC-CCEEEECCCCEECCCCCCCCCCHHH
T ss_conf 998444201389844899999972377777367534578899999999852698-4333431211005641014676033
Q ss_pred CCCCCCCCCCHHHH-HC-------CH------------HHH-HHHHHH-CCCCCCCEEEEEE
Q ss_conf 44443101513431-00-------02------------888-988874-4888897499998
Q gi|254780405|r 116 ISPFQLVYLDPPYG-QG-------LA------------QQA-LAIIDK-EGWLEPNALVIIE 155 (189)
Q Consensus 116 ~~~fDiIf~DPPY~-~~-------~~------------~~~-l~~l~~-~~~L~~~gliiiE 155 (189)
..+||-|++|-|-. ++ .. ..+ +.+|.. ..+|++||.++..
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred HHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 44125368714568984302280276665554113597389999999999872578779994
No 183
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.82 E-value=0.0013 Score=42.22 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=67.4
Q ss_pred CEEEECCCCCCCCH---HHHHCC-CC-CCHHHHHHHHHHHHHHHH--HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67861100122210---011016-87-330111000123566764--200133221002234456654210034444310
Q gi|254780405|r 50 TRMLNIFAGTGSVG---FEALSR-GC-HYVLFVDNNSESIRLIRR--NSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 50 ~~vlDlfaGsG~lg---iEalSr-GA-~~v~~vE~~~~a~~~lk~--N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
..++=++||=|-|- |.|+.+ |. -++++||+|+.|+-++++ |.+..+ ++++++.+|...|- ...++||+
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~--~~V~ii~~DMR~w~---~p~k~Di~ 262 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWG--DKVTLISSDMREWK---GPEKADIL 262 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCC--CCEEEEECCHHCCC---CCCCCCEE
T ss_conf 69999858964899999999998199669999956877999999985054317--80699908000579---98773589
Q ss_pred CCCH--HHH-HCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 1513--431-0002888988874488889749999
Q gi|254780405|r 123 YLDP--PYG-QGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DP--PY~-~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
..-= -|+ .++..++|+.+.+ .|+++|+-|-
T Consensus 263 VSELLGSFGDNELSPECLdg~q~--~lk~~gIsIP 295 (447)
T pfam05185 263 VSELLGSFGDNELSPECLDGAQR--FLKPDGISIP 295 (447)
T ss_pred EEECCCCCCCCCCCHHHHHHHHH--HCCCCCEEEC
T ss_conf 75211666665579778778997--4689846826
No 184
>KOG3010 consensus
Probab=96.82 E-value=0.0032 Score=40.00 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCC-EEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 8677858999999987763336455896-786110012221001101687330111000123566764200133221002
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDST-RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~-~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
+.||.=- -.+|+.|...- ++. ..+|++||+|.=.+-..+. -++|+++|.+...++.+++--...-+.....
T Consensus 14 ~ARP~YP---tdw~~~ia~~~----~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ 85 (261)
T KOG3010 14 NARPSYP---TDWFKKIASRT----EGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPST 85 (261)
T ss_pred HCCCCCC---HHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHH-HHHHEEECCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 2588986---89999998428----88645888456887114788875-4343130687999998611898620457853
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCE-EEEEECCC
Q ss_conf 2344566542100344443101513431000288898887448888974-99998177
Q gi|254780405|r 102 IFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNA-LVIIEEYA 158 (189)
Q Consensus 102 ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~g-liiiE~~~ 158 (189)
+...+...++- ..+..|+|.+---..--..++....+ ...|+++| ++.+=...
T Consensus 86 ms~~~~v~L~g--~e~SVDlI~~Aqa~HWFdle~fy~~~--~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010 86 MSSDEMVDLLG--GEESVDLITAAQAVHWFDLERFYKEA--YRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CCCCCCCCCCC--CCCCEEEEHHHHHHHHHCHHHHHHHH--HHHCCCCCCEEEEEECC
T ss_conf 45665653237--87641211054567763429999999--99807789779999724
No 185
>PRK06922 hypothetical protein; Provisional
Probab=96.81 E-value=0.0015 Score=42.00 Aligned_cols=109 Identities=13% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 558967861100122210--011016873301110001235667642001332210022344566542100344443101
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
.+.|-.++|+++|-|.|= ||----+ +.++.||++...++.+++--. +-....+|.++||.++......+..|-|.
T Consensus 418 yi~G~~ivdiG~GGGVMldli~E~~p~-~~i~GIDiS~NVIe~L~kkK~--~e~ksW~V~~gDAL~l~d~f~~eSvdTiv 494 (679)
T PRK06922 418 YIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQ--NEGRSWNVIKGDAINLSSSFEKESVDTIV 494 (679)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC-CCCEEEECCHHHHHHHHHHHH--HCCCCCEEECCCCCCCHHHCCCCCCCEEE
T ss_conf 014767998669962148766765899-861466660889999988777--54898423214303615434756664687
Q ss_pred CC---------HHHH-HCCHHHHHHHHHH--CCCCCCCEEEEEECC
Q ss_conf 51---------3431-0002888988874--488889749999817
Q gi|254780405|r 124 LD---------PPYG-QGLAQQALAIIDK--EGWLEPNALVIIEEY 157 (189)
Q Consensus 124 ~D---------PPY~-~~~~~~~l~~l~~--~~~L~~~gliiiE~~ 157 (189)
.- -||. ......+++...+ ...|+|||.+|+-..
T Consensus 495 ~sSIlHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRDG 540 (679)
T PRK06922 495 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 540 (679)
T ss_pred EHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 4277888886345667134799999999999987288864999457
No 186
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=96.79 E-value=0.0026 Score=40.50 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=77.3
Q ss_pred CCCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHH--------HHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHC--
Q ss_conf 5896786110012221001-10168733011100--------012356676420013322-10022344566542100--
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDN--------NSESIRLIRRNSELLGVE-KNCNIFFRDVLRLGKIG-- 114 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~--------~~~a~~~lk~N~~~~~~~-~~~~ii~~D~~~~~~~~-- 114 (189)
-+...+||++||.|.+=++ |=.+--.....||+ ....+-.+-+.++..+++ .|.++.++||.+++...
T Consensus 18 ~~~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~ 97 (216)
T TIGR00091 18 NQKPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFP 97 (216)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHC
T ss_conf 14544898416876026899772799727778999887410227289988755766178442135221360232045400
Q ss_pred ----CCCCCCCCCCCHHHHHC------CHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf ----34444310151343100------02888988874488889749999817
Q gi|254780405|r 115 ----NISPFQLVYLDPPYGQG------LAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 115 ----~~~~fDiIf~DPPY~~~------~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
..++.=+-|=||=+.+- .....|..... .|+++|+|.+...
T Consensus 98 ~~PP~l~k~f~~FPDPW~KkRH~KRR~~~~~Fl~~~~~--~L~~~G~i~~~TD 148 (216)
T TIGR00091 98 DGPPSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEVAN--VLKKGGVIELKTD 148 (216)
T ss_pred CCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHH--HCCCCCEEEEECC
T ss_conf 78980456888778895102102234256789999999--7045968999707
No 187
>KOG4058 consensus
Probab=96.78 E-value=0.0075 Score=37.77 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 78589999999877633364558967861100122210011016873301110001235667642001332210022344
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~ 105 (189)
|.+..--|.+.|.|.. +-.| ..+||++|-|-+-+.|.--|+...+.||.|+..+...+-..-.-++.....+...
T Consensus 55 pAtteQv~nVLSll~~----n~~G-klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rk 129 (199)
T KOG4058 55 PATTEQVENVLSLLRG----NPKG-KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRK 129 (199)
T ss_pred CCCHHHHHHHHHHCCC----CCCC-CEEECCCCCCEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 7309999999987148----9988-1785258985244666650777677433038999999999998742533102232
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 56654210034444310151343100028889888744888897499998177888675788579998341856999865
Q gi|254780405|r 106 DVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTKIYFFS 185 (189)
Q Consensus 106 D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~yG~t~i~f~~ 185 (189)
|..++. .+.-.+-+||.- ......+-++|... +..|+-++.- .+++|. |++...---|-..+-+|.
T Consensus 130 dlwK~d--l~dy~~vviFga----es~m~dLe~KL~~E--~p~nt~vvac-----RFPLP~-w~leh~igeG~d~VW~Yd 195 (199)
T KOG4058 130 DLWKVD--LRDYRNVVIFGA----ESVMPDLEDKLRTE--LPANTRVVAC-----RFPLPT-WQLEHAIGEGLDRVWAYD 195 (199)
T ss_pred HHHHCC--CCCCCEEEEEEH----HHHHHHHHHHHHHH--CCCCCEEEEE-----ECCCCC-CCHHHHHHCCCCEEEEEE
T ss_conf 110044--555635899601----78776668999864--7688737887-----347985-325757643722388883
Q ss_pred CCC
Q ss_conf 078
Q gi|254780405|r 186 YNP 188 (189)
Q Consensus 186 ~np 188 (189)
.|+
T Consensus 196 ~n~ 198 (199)
T KOG4058 196 VNE 198 (199)
T ss_pred CCC
T ss_conf 788
No 188
>KOG1501 consensus
Probab=96.70 E-value=0.00073 Score=43.78 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 5896786110012221001101687330111000123566764200133221002234456654
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL 110 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~ 110 (189)
..-..+||+++|||-+++-|.--||.+|+++|--+...+.+++-.++.+..+++++|+.-..+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEE
T ss_conf 7438999726881089999887357707752122218999999884188765226620366315
No 189
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=96.68 E-value=0.0025 Score=40.63 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHH-CCCCCCC---C
Q ss_conf 896786110012221001-10168733011100012356676420013-3221002234456654210-0344443---1
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELL-GVEKNCNIFFRDVLRLGKI-GNISPFQ---L 121 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~-~~~~~~~ii~~D~~~~~~~-~~~~~fD---i 121 (189)
++..+||++||.|-.-++ |...--...+++|.....+..+.+-+... ++ .|+.++++||..++.. .....+| +
T Consensus 20 ~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l-~Ni~~~~~da~~~l~~~~~~~~l~~i~i 98 (199)
T pfam02390 20 EQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGL-QNLRILCGDAMKLLPNLFPDGSLQKIFI 98 (199)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHCCCCCEEEEEE
T ss_conf 994499973688899999999789987899995059999999999984577-7378760479999997579886427999
Q ss_pred CCCCH-HHH---HC--CHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 01513-431---00--0288898887448888974999981
Q gi|254780405|r 122 VYLDP-PYG---QG--LAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 122 If~DP-PY~---~~--~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
-|-|| |=. +. ...+.++.+.. .|+++|.+.+-+
T Consensus 99 ~FPDPWpKkrH~KRRli~~~fl~~~~~--~Lk~gG~l~~~T 137 (199)
T pfam02390 99 NFPDPWPKKRHHKRRLLQPEFLKEYAR--VLKPGGVLHLAT 137 (199)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 679998764424400079999999999--638898999982
No 190
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.0007 Score=43.89 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=43.1
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5589678611001222100110168733011100012356676420013
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
-.++..++|-|||-||+-+||+-.|. .|++||.+|.|+-++|.-++-.
T Consensus 88 ~~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 88 PFEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCC-EEEEEECCCHHHHHHHHHHHCC
T ss_conf 45687402665689866358886476-3689731608999999997214
No 191
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=96.53 E-value=0.0082 Score=37.55 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99987763336455896786110012221001101--6873301110001235667642001332210022344566542
Q gi|254780405|r 34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS--RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG 111 (189)
Q Consensus 34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS--rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~ 111 (189)
++|+=+..+.+ ++.-.++||++||+|+-...|.. .+.+++++||.++.+.+..+.-++......... ...+....
T Consensus 21 ~vl~Ei~~r~p-~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~- 97 (275)
T pfam09243 21 ASLDELAERVP-QFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGA- 97 (275)
T ss_pred HHHHHHHHHCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCC-
T ss_conf 99999998679-9998757772775799999999884247689997489999999999985184345431-11431011-
Q ss_pred HHCCCCCCCCCCCCHHHH
Q ss_conf 100344443101513431
Q gi|254780405|r 112 KIGNISPFQLVYLDPPYG 129 (189)
Q Consensus 112 ~~~~~~~fDiIf~DPPY~ 129 (189)
.....++|+|.+ +|.
T Consensus 98 -~~~~~~~DLVi~--sy~ 112 (275)
T pfam09243 98 -ALDFEPADLVTI--SYV 112 (275)
T ss_pred -CCCCCCCCEEEE--ECH
T ss_conf -245898788996--142
No 192
>KOG0822 consensus
Probab=96.32 E-value=0.0041 Score=39.35 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=76.5
Q ss_pred HHHHHHHHHHCCCCCCC--CCEEEECCCCCCCCHH---HH---HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999877633364558--9678611001222100---11---0168733011100012356676420013322100223
Q gi|254780405|r 32 KKALFDILTHVYPVFLD--STRMLNIFAGTGSVGF---EA---LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 32 realFniL~~~~~~~~~--~~~vlDlfaGsG~lgi---Ea---lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
-+|++.-|.-+.+..-. -.+++=++||-|-++= -| .+|. -++++||+||.|+.+++. .+.-.-+++++++
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~Rk-VklyavEKNPNAivtL~~-~n~~~W~~~Vtii 426 (649)
T KOG0822 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRK-VKLYAVEKNPNAIVTLQN-RNFECWDNRVTII 426 (649)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHH-HCHHHHCCEEEEE
T ss_conf 99999999754750114732899996388760788999999872471-579999338544042454-2436546816999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCH--HHH-HCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 44566542100344443101513--431-0002888988874488889749999
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDP--PYG-QGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DP--PY~-~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
.+|..+|... .++-||+...= -|+ .++..++|+-+.+ .|+++|+-|-
T Consensus 427 ~~DMR~w~ap--~eq~DI~VSELLGSFGDNELSPECLDG~q~--fLkpdgIsIP 476 (649)
T KOG0822 427 SSDMRKWNAP--REQADIIVSELLGSFGDNELSPECLDGAQK--FLKPDGISIP 476 (649)
T ss_pred ECCCCCCCCC--HHHCCCHHHHHHCCCCCCCCCHHHHHHHHH--HCCCCCEECC
T ss_conf 3431246884--442120399764224676679778777885--1588855756
No 193
>KOG2361 consensus
Probab=96.22 E-value=0.0067 Score=38.06 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=66.4
Q ss_pred EEEECCCCCCCCHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHCCCCCCCCC---
Q ss_conf 786110012221001101687---33011100012356676420013322100223445665--4210034444310---
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGC---HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR--LGKIGNISPFQLV--- 122 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA---~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~--~~~~~~~~~fDiI--- 122 (189)
.+|+++||.|...+.-|.--+ =++++.|-++.|++..++|.+... +++..+..|... +........+|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred HHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCH--HHHCCCCEECCCHHCCCCCCCCCCCEEEEE
T ss_conf 511222477751224442489987389974898689999873633264--550120001656010378886763347899
Q ss_pred CC---CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 15---13431000288898887448888974999981
Q gi|254780405|r 123 YL---DPPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 123 f~---DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
|. =|| +..+.+++.+.. +|+|||.+++--
T Consensus 152 FvLSAi~p---ek~~~a~~nl~~--llKPGG~llfrD 183 (264)
T KOG2361 152 FVLSAIHP---EKMQSVIKNLRT--LLKPGGSLLFRD 183 (264)
T ss_pred EEEECCCH---HHHHHHHHHHHH--HHCCCCEEEEEE
T ss_conf 98751484---778999999999--748886799841
No 194
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=96.12 E-value=0.0066 Score=38.09 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=56.5
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015---
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL--- 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~--- 124 (189)
+....||++||-|.+... ++...++|++.|.++....-+++- + ++++. +.+|.+ ...+||+|-+
T Consensus 94 ~~~~LLDlGAGdG~VT~~-la~~F~~V~aTE~S~~Mr~rL~~r----g----f~vl~--~~~~~~--~~~~fDvIscLNv 160 (265)
T pfam05219 94 EPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRLKKK----N----YNVLT--EIEWQE--TDVNLDLILCLNL 160 (265)
T ss_pred CCCEEEEECCCCCHHHHH-HHHHHCEEEEEECCHHHHHHHHHC----C----CEEEE--EHHCCC--CCCCEEEEHHHHH
T ss_conf 766478835899789999-997523588872789999999975----9----86875--012035--6874455422244
Q ss_pred -CHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf -134310002888988874488889749999
Q gi|254780405|r 125 -DPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 125 -DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
| .-..-..+|..+.+ .|+|+|.+++
T Consensus 161 LD---Rc~~P~~LL~~i~~--~L~P~G~lil 186 (265)
T pfam05219 161 LD---RCFDPFKLLEDIHL--ALAPNGRVIV 186 (265)
T ss_pred HH---CCCCHHHHHHHHHH--HCCCCCEEEE
T ss_conf 53---13886999999997--2499967999
No 195
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.10 E-value=0.0069 Score=37.98 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHC
Q ss_conf 364558967861100122210011016-8-733011100012356676420013322100223445665------42100
Q gi|254780405|r 43 YPVFLDSTRMLNIFAGTGSVGFEALSR-G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKIG 114 (189)
Q Consensus 43 ~~~~~~~~~vlDlfaGsG~lgiEalSr-G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~~ 114 (189)
+...-.|..||||+|..|+-+--|..+ | ...|++||+.+-.- + .+++++++|..+ +....
T Consensus 46 ~~l~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~p-----------i-~gv~~i~gDi~~~~~~~~i~~~~ 113 (209)
T PRK11188 46 DKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP-----------I-VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCC-----------C-CCCEEECCCCCCHHHHHHHHHHH
T ss_conf 56457899899806899757899999739997399986530453-----------7-89676403445889999999985
Q ss_pred CCCCCCCCCCCH-HHHH-----------CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 344443101513-4310-----------0028889888744888897499998
Q gi|254780405|r 115 NISPFQLVYLDP-PYGQ-----------GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 115 ~~~~fDiIf~DP-PY~~-----------~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
...+||+|..|- |=-. .+.+..++.. ..+|+++|-+++-
T Consensus 114 ~~~~~DvVlSDmAPn~tG~~~~D~~~s~~L~~~al~~a--~~~Lk~gG~fv~K 164 (209)
T PRK11188 114 GDSKVDVVMSDMAPNMSGTPAVDIPRAMYLVELALDMC--RQVLAPGGSFVVK 164 (209)
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 89873089666665667870335999999999999999--9862679889999
No 196
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.05 E-value=0.0042 Score=39.26 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=54.2
Q ss_pred CCCEEEECCCCCCCCHH---HHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89678611001222100---11016-873301110001235667642001332210022344566542100344443101
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGF---EALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgi---EalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
+..++||++||.|...- +++.. ....++.+|+++.+++.+-+. ..++....+|..+ ++. ....+|+|+
T Consensus 85 ~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~------~~~~~~~Va~~~~-lP~-~d~s~D~vl 156 (272)
T PRK11088 85 KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKR------YPQVTFCVASSHR-LPF-ADQSLDAII 156 (272)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCC------CCCCEEEEEECCC-CCC-CCCCCEEEE
T ss_conf 78648881587778999999974115787379981179999999626------8885499961001-888-766540899
Q ss_pred C-CHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 5-134310002888988874488889749999
Q gi|254780405|r 124 L-DPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 124 ~-DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
. .-|. .+++. ..+|+|+|.+|.
T Consensus 157 ~vFsP~---~~~Ef------~RvLkp~G~li~ 179 (272)
T PRK11088 157 RIYAPC---KAEEL------ARVVKPGGIVIT 179 (272)
T ss_pred EEECCC---CHHHH------HHEECCCCEEEE
T ss_conf 984378---85886------124637978999
No 197
>KOG2912 consensus
Probab=96.02 E-value=0.0016 Score=41.69 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=56.3
Q ss_pred EECCCCCCCCHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-----HHCCCCCCCCCC
Q ss_conf 61100122210011016873----301110001235667642001332210022344566542-----100344443101
Q gi|254780405|r 53 LNIFAGTGSVGFEALSRGCH----YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG-----KIGNISPFQLVY 123 (189)
Q Consensus 53 lDlfaGsG~lgiEalSrGA~----~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~-----~~~~~~~fDiIf 123 (189)
+|+ |||+..|++|- ||. .-++.|.|..++..++.|++.+++++.+++++-...+.+ +......||...
T Consensus 107 iDI--gtgasci~~ll-g~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcM 183 (419)
T KOG2912 107 IDI--GTGASCIYPLL-GARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCM 183 (419)
T ss_pred EEC--CCCHHHHHHHH-HHHHCCCEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCHHHCCHHHHCCCCCCEEEEEE
T ss_conf 202--67534667864-000216323664121023554542400036601035778453332012132267653246883
Q ss_pred CCHHHHH
Q ss_conf 5134310
Q gi|254780405|r 124 LDPPYGQ 130 (189)
Q Consensus 124 ~DPPY~~ 130 (189)
++|||-+
T Consensus 184 cNPPFfe 190 (419)
T KOG2912 184 CNPPFFE 190 (419)
T ss_pred CCCCHHH
T ss_conf 2870330
No 198
>KOG2793 consensus
Probab=96.01 E-value=0.0049 Score=38.87 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-----CCHH---HHHHHHHHHHHHCCCCC-
Q ss_conf 89678611001222100110168733011100012356676420013322-----1002---23445665421003444-
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-----KNCN---IFFRDVLRLGKIGNISP- 118 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-----~~~~---ii~~D~~~~~~~~~~~~- 118 (189)
+..++|.|+||||-.|+-|.-.+...|+ ..-.+..+..++.|...++.. ..+. +..+++.... ...+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~-ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~--~~~~~~ 162 (248)
T KOG2793 86 KYINVLELGSGTGLVGILAALLLGAEVV-LTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS--FRLPNP 162 (248)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCEEC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH--HCCCCC
T ss_conf 6405899668755899999987366451-2775026788888665656666403782369987468865575--526876
Q ss_pred CCCCCC-CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 431015-134310002888988874488889749999817788
Q gi|254780405|r 119 FQLVYL-DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 119 fDiIf~-DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
||+|.+ |+=|.....+.++..+.. ++..++.+.++.+.+.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~--ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793 163 FDLILASDVVYEEESFEGLVKTLAF--LLAKDGTIFLAYPLRR 203 (248)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHH--HHHCCCEEEEEEECCC
T ss_conf 5579985305517761469999999--9743884899986002
No 199
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.84 E-value=0.0046 Score=39.05 Aligned_cols=58 Identities=29% Similarity=0.470 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCC--CCCCCEEEECCCCCCCC--HHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999877633364--55896786110012221--00110168733011100012356676420
Q gi|254780405|r 31 TKKALFDILTHVYPV--FLDSTRMLNIFAGTGSV--GFEALSRGCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 31 vrealFniL~~~~~~--~~~~~~vlDlfaGsG~l--giEalSrGA~~v~~vE~~~~a~~~lk~N~ 91 (189)
-.+.|.++|-. -+. .-..-+|+|||||-|.+ |+|++ |.+-|...|.|+.|.++-+.|.
T Consensus 72 ~~~~~~~~~~~-~~~~~~~~~f~FIDLFAGIGG~r~~~e~~--gg~CVfssE~dk~a~~tY~an~ 133 (470)
T PRK10458 72 EFAHLQTLLPK-PPAHHPHYAFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANW 133 (470)
T ss_pred HHHHHHHHCCC-CCCCCCCCCCEEEEECCCCCHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHC
T ss_conf 99999985799-97778888866763357755677999973--9979998506899999999965
No 200
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=95.82 E-value=0.062 Score=32.33 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred CCEEEECCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCH-HHH-HCCC-CCCHHHHHHHHHHHH
Q ss_conf 8867443788886---778589999999877633364558967861100122210-011-0168-733011100012356
Q gi|254780405|r 12 QRRLLHTPQNRSI---RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVG-FEA-LSRG-CHYVLFVDNNSESIR 85 (189)
Q Consensus 12 kg~~l~~~~~~~~---RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lg-iEa-lSrG-A~~v~~vE~~~~a~~ 85 (189)
-|+-|.+.++.-. |-.++.---+ |-.+.. + ......|.|||+|-|- +-+ |-|+ -..+++-|.|..+++
T Consensus 18 ~G~VL~sApG~P~FPVRLAsEifqRa-l~~~~g----~-~p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~ 91 (249)
T pfam11599 18 CGRVLHHAGGEPAFPVRLALEIFERA-LARLIG----D-AEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIE 91 (249)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHH-HHHCCC----C-CCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHH
T ss_conf 65376438999884189999999999-986268----8-87303305777118999999853157877774258878999
Q ss_pred HHHHHHCCCCCC---CCH-------H----HHHHHHH-------HHHHH-----------------------CCCCCCCC
Q ss_conf 676420013322---100-------2----2344566-------54210-----------------------03444431
Q gi|254780405|r 86 LIRRNSELLGVE---KNC-------N----IFFRDVL-------RLGKI-----------------------GNISPFQL 121 (189)
Q Consensus 86 ~lk~N~~~~~~~---~~~-------~----ii~~D~~-------~~~~~-----------------------~~~~~fDi 121 (189)
.+.+|+.++..+ .+. + .-..|+. ..+.. .....-|+
T Consensus 92 LA~~NL~LLt~~GL~~R~~eL~e~~~~f~k~s~~~aa~aA~Rl~~~l~a~gg~~p~~~~~ADvfdp~~l~~~~~g~~pDi 171 (249)
T pfam11599 92 LAADNLALLSKAGINAREDELKALSERFGKASHIDAAHAADRIEELLTAEGGALPCAIKTADLFDGNALEACDAGFAPDI 171 (249)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHHHHHCCCCCCE
T ss_conf 99864544032016778999999999848825788998889999998603899861210002358603677743788886
Q ss_pred CCCCHHHHHC----------CHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEE
Q ss_conf 0151343100----------028889888744888897499998177888675788579998341856999865
Q gi|254780405|r 122 VYLDPPYGQG----------LAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTKIYFFS 185 (189)
Q Consensus 122 If~DPPY~~~----------~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~yG~t~i~f~~ 185 (189)
|..|=||++. -...+|..|.. .|-++++|.+-..+...+.. ..++-++.-+.|.-.+-+++
T Consensus 172 VvTDlPYGe~t~Weg~~~~~~v~g~l~~l~~--vlp~~aVv~V~~~~~~k~~~-~~~~a~er~kvG~R~~~l~~ 242 (249)
T pfam11599 172 IITDLPYGEMTEWEEQVGAGGIAGLLNALAA--ACGADAIIAVCMDKKQKIHN-AIFKALERLKIGKRKAEIVK 242 (249)
T ss_pred EEECCCCCCEEEECCCCCCCCHHHHHHHHHH--HCCCCEEEEEEECCCCCCCC-CCHHHHHHHHCCCEEEEEEH
T ss_conf 8843787740022377899767899999986--57998089998168754787-63006677520534556342
No 201
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=95.68 E-value=0.013 Score=36.43 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCCCCCCCHHHHH---CCCCCCHH--HHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 1001222100110---16873301--11000123566764200133-221002234456654210034444310151343
Q gi|254780405|r 55 IFAGTGSVGFEAL---SRGCHYVL--FVDNNSESIRLIRRNSELLG-VEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 55 lfaGsG~lgiEal---SrGA~~v~--~vE~~~~a~~~lk~N~~~~~-~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY 128 (189)
.|=|||-+-+-.+ ++.-..++ -+|+|+.|...+++-+..++ .+++..++.+|+.+.. .....||+||+-.=-
T Consensus 126 AFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~--~~l~~~DvV~lAALV 203 (277)
T pfam03059 126 AFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVT--TELKAYDVVFLAALV 203 (277)
T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCC--CCCCCCCEEEEHHHC
T ss_conf 996378861389999885088731433127889999999999865530047289952644444--444547689872113
Q ss_pred H--HCCHHHHHHHHHHCCCCCCCEEEEEECCCC--C------CCCCCCCCEEEEE-EECCCE--EEEEEEC
Q ss_conf 1--000288898887448888974999981778--8------8675788579998-341856--9998650
Q gi|254780405|r 129 G--QGLAQQALAIIDKEGWLEPNALVIIEEYAG--T------CISVGAAFHFLQE-RKYGDT--KIYFFSY 186 (189)
Q Consensus 129 ~--~~~~~~~l~~l~~~~~L~~~gliiiE~~~~--~------~~~~~~~~~~~~~-k~yG~t--~i~f~~~ 186 (189)
+ ...-.++++.+.+ .+++|+.+++-+... . ++....+|+.+.. .=+|.+ .+.|++-
T Consensus 204 Gm~~e~K~~I~~hL~k--~m~~Ga~l~~Rsa~GlR~~LYp~vd~~~~~GFe~l~~~hP~~~ViNSvI~~rk 272 (277)
T pfam03059 204 GMDKEEKAKVIDHLGK--HMAPGALLVLRSAHGARAFLYPVVDPCDLRGFEVLSVYHPTDEVINSVIVARK 272 (277)
T ss_pred CCCHHHHHHHHHHHHH--HCCCCCEEEEECCHHHHHHCCCCCCHHHCCCCEEEEEECCCCCCEEEEEEEEC
T ss_conf 5433359999999997--45899679996112178762887896673870799998899984113899833
No 202
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.66 E-value=0.016 Score=35.85 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 7785899999998776333645589678611001222100110168733011--10001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLF--VDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~--vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
=|..+|-|+.|.++|...++. .+..||++.||||.=+.-..+ -...+++ -|.+......+...++..++.+--.-
T Consensus 4 spAaeRNk~pIl~vL~~~l~~--~~~~VLEIaSGTGQHav~fA~-~lP~l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P 80 (201)
T pfam06080 4 APAAERNREPILSVLQSYFAK--TTERVLEIASGTGQHAVFFAP-LLPNLTWQPSDPDPNLRGSIAAWADQQGLRNLRPP 80 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCHHHHHHHHH-HCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 846673588999999998274--788579976872699999998-78998851588887789999999874377766887
Q ss_pred HHHHHHH--HH-HHCCCCCCCCCCCCHHHHHCCHH----HHHHHHHH--CCCCCCCEEEEEE
Q ss_conf 3445665--42-10034444310151343100028----88988874--4888897499998
Q gi|254780405|r 103 FFRDVLR--LG-KIGNISPFQLVYLDPPYGQGLAQ----QALAIIDK--EGWLEPNALVIIE 155 (189)
Q Consensus 103 i~~D~~~--~~-~~~~~~~fDiIf~DPPY~~~~~~----~~l~~l~~--~~~L~~~gliiiE 155 (189)
+.-|+.+ |. ......+||.||+ -|... ...+.+.+ .+.|+++|++++-
T Consensus 81 ~~LDv~~~~w~~~~~~~~~~dai~~-----iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lY 137 (201)
T pfam06080 81 LHLDVTRPPWPVEAPAPASYDAIFS-----INMIHISPWSCVEGLFRGAGRLLPPGGVLYIY 137 (201)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHH-----HHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3763278998755566766002330-----02577378999999999999985158826874
No 203
>PRK04266 fibrillarin; Provisional
Probab=95.45 E-value=0.024 Score=34.80 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 778589999999877633364558967861100122210011016--873301110001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
-|.-|++--++.+=+.+ .+ .-.|..||=|+|+||. ..--+|- |...|++||.++.+.+-+-.-++ .-.|+--
T Consensus 51 ~P~RSKLaAail~g~~~-~~-i~~gskVLYLGAasGT-TVSHvsDiV~~G~VyAVE~spr~~RdL~~la~---~R~NivP 124 (226)
T PRK04266 51 NPRRSKLAAAILNGLKN-FP-IKKGSKVLYLGAASGT-TVSHVSDIVEEGRVYAVEFAPRVMRELLLVAE---ERKNIIP 124 (226)
T ss_pred CCCCCHHHHHHHCCCCC-CC-CCCCCEEEEECCCCCC-CHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH---HCCCCEE
T ss_conf 88721999999769755-67-5899879995477798-48889875179649999827077899999985---0899625
Q ss_pred HHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 34456654210-03444431015134310002888988874488889749999
Q gi|254780405|r 103 FFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 103 i~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+-+||..-.+. .-.++.|+||.|=.= -+..+-++. .....|+++|..++
T Consensus 125 Il~DAr~P~~Y~~~v~~VD~i~qDvAQ-~dQa~I~~~--Na~~FLk~gG~~~l 174 (226)
T PRK04266 125 ILGDARKPEEYAHLVEKVDVIYQDVAQ-PNQAEIAAD--NADIFLKPGGYLML 174 (226)
T ss_pred EECCCCCHHHHHHHCCCCCEEEEECCC-HHHHHHHHH--HHHHHHHCCCEEEE
T ss_conf 754678845644205656589960677-428999999--99986015988999
No 204
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=95.29 E-value=0.015 Score=35.97 Aligned_cols=116 Identities=10% Similarity=0.112 Sum_probs=75.2
Q ss_pred EEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 8611001222100110168-733011100012356676420013322100223445665421003444431015134310
Q gi|254780405|r 52 MLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ 130 (189)
Q Consensus 52 vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~ 130 (189)
+.|++|--|-+.+.++.+| +.++++.|.++..++.+++|++..++.+++++..+|.++.++.. +..|.|.+ -
T Consensus 1 vADIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~--e~vd~ivI-----A 73 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEEL--DLIDVIVI-----A 73 (204)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCC--CCCCEEEE-----E
T ss_conf 9710545089999999779987799961667499999999997599753899977842205867--76577999-----4
Q ss_pred CCHHHHHHHHHHC--CCCCCCEEEEEECCCCCC----CCCCCCCEEEEEE
Q ss_conf 0028889888744--888897499998177888----6757885799983
Q gi|254780405|r 131 GLAQQALAIIDKE--GWLEPNALVIIEEYAGTC----ISVGAAFHFLQER 174 (189)
Q Consensus 131 ~~~~~~l~~l~~~--~~L~~~gliiiE~~~~~~----~~~~~~~~~~~~k 174 (189)
+....++..|... ..+..-..+|++-..... .-...+|.+.+|+
T Consensus 74 GMGG~lI~~IL~~~~~~~~~~~~lILQP~~~~~~lR~~L~~~g~~I~~E~ 123 (204)
T pfam04816 74 GMGGTLIADILEQGKNKLAGVKRLILQPNINEEELREWLSQNSWQIKAET 123 (204)
T ss_pred CCCHHHHHHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 86899999999818455357577999579785999999998899788878
No 205
>KOG1709 consensus
Probab=95.23 E-value=0.037 Score=33.68 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 77858999999987763336455896786110012221001101-68733011100012356676420013322100223
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
+|-+.+.-|+++ .+|.+||.++=|.|.+.- ++. +--.+-+-||-++..++-++.+.= .-.+|+.+.
T Consensus 88 tpiMha~A~ai~----------tkggrvLnVGFGMgIidT-~iQe~~p~~H~IiE~hp~V~krmr~~gw--~ek~nViil 154 (271)
T KOG1709 88 TPIMHALAEAIS----------TKGGRVLNVGFGMGIIDT-FIQEAPPDEHWIIEAHPDVLKRMRDWGW--REKENVIIL 154 (271)
T ss_pred HHHHHHHHHHHH----------HCCCEEEEECCCHHHHHH-HHHHCCCCCEEEEECCHHHHHHHHHCCC--CCCCCEEEE
T ss_conf 489999999986----------179648984231677888-8863598631787359789999986366--544546887
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEEE
Q ss_conf 445665421003444431015134310002888988874-488889749999
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVII 154 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~gliii 154 (189)
.+--...+.....+.||=||-|- | ...++++.+.-.. -++|+|+|++-.
T Consensus 155 ~g~WeDvl~~L~d~~FDGI~yDT-y-~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709 155 EGRWEDVLNTLPDKHFDGIYYDT-Y-SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ECCHHHHHCCCCCCCCCEEEEEC-H-HHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 13467644014456756267513-0-16789999999877640087744888
No 206
>KOG1975 consensus
Probab=95.22 E-value=0.015 Score=36.01 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHH--HH--CCCCC
Q ss_conf 896786110012221001101687330111000123566764200133221-----0022344566542--10--03444
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEK-----NCNIFFRDVLRLG--KI--GNISP 118 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~-----~~~ii~~D~~~~~--~~--~~~~~ 118 (189)
.+..++||+||-|.=-+--..-|+...+.+|+...+++-+++-.+...--. .+.++.+|++.-. .. .+..+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred CCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCCC
T ss_conf 22300000567762076765514563576534340099999999999866641365169997144166898742578988
Q ss_pred CCCCCCCH--HHHHCC---HHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 43101513--431000---28889888744888897499998
Q gi|254780405|r 119 FQLVYLDP--PYGQGL---AQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 119 fDiIf~DP--PY~~~~---~~~~l~~l~~~~~L~~~gliiiE 155 (189)
||+|=+-= -|.... ....|..+ .+.|+|||.+|--
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nv--a~~LkpGG~FIgT 236 (389)
T KOG1975 197 FDIVSCQFAFHYAFETEESARIALRNV--AKCLKPGGVFIGT 236 (389)
T ss_pred CCEEEEEEEEEEEECCHHHHHHHHHHH--HHHCCCCCEEEEE
T ss_conf 555655456754313388899999989--9635888579984
No 207
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=95.08 E-value=0.043 Score=33.25 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC------C-----CCCCCHHHHHHHHHHHHHHCC
Q ss_conf 58967861100122210011016873301110001235667642001------3-----322100223445665421003
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL------L-----GVEKNCNIFFRDVLRLGKIGN 115 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~------~-----~~~~~~~ii~~D~~~~~~~~~ 115 (189)
-.+.+||=..||.|-=-.-.+++|. .|+.||.++.|++...+.... . --..+++++++|.+.+... .
T Consensus 21 ~~~~rvlVPlCGks~D~~wLa~~G~-~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~-~ 98 (203)
T pfam05724 21 PPGLRVLVPLCGKALDMVWLAEQGH-FVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPRE-E 98 (203)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHH-H
T ss_conf 9998899968998599999983898-4899956799999999973788751013662132058648997732137843-4
Q ss_pred CCCCCCCC------CCHHHHHCCHHHHHHHHHHCCCCCCCE---EEEEECC
Q ss_conf 44443101------513431000288898887448888974---9999817
Q gi|254780405|r 116 ISPFQLVY------LDPPYGQGLAQQALAIIDKEGWLEPNA---LVIIEEY 157 (189)
Q Consensus 116 ~~~fDiIf------~DPPY~~~~~~~~l~~l~~~~~L~~~g---liiiE~~ 157 (189)
..+||.|| +=||=.-..|.+.+.. +|+++| ++.+|..
T Consensus 99 ~g~fD~IyDraal~ALpp~~R~~Ya~~l~~-----lL~pgg~~lLitl~y~ 144 (203)
T pfam05724 99 LGKFDLIYDRAALCALPPEMRPRYAKQMYE-----LLPPGGEGLLITLDYP 144 (203)
T ss_pred CCCCCEEEEECCEEECCHHHHHHHHHHHHH-----HHCCCCEEEEEEEECC
T ss_conf 687348997032353898999999999999-----7189966999999738
No 208
>pfam01269 Fibrillarin Fibrillarin.
Probab=94.63 E-value=0.053 Score=32.76 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 778589999999877633364558967861100122210011016--87-330111000123566764200133221002
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
-|.-|++--+|.+=+.. ++ .-.|..||=|+|+||. +.--+|- |. ..|++||.++.+.+-+-.-++ .-.|+-
T Consensus 52 ~P~RSKLaAail~g~~~-~~-i~~gskVLYLGAasGT-TVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~---~R~NIv 125 (229)
T pfam01269 52 NPFRSKLAAAILKGLDD-IP-IKPGSKVLYLGAASGT-TVSHVSDIVGPEGVVYAVEFSPRVGRELINVAK---KRPNIV 125 (229)
T ss_pred CCCCCHHHHHHHCCCCC-CC-CCCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---CCCCCE
T ss_conf 88701889999758755-68-5899879994477798-576788722889539999717355789999974---279944
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 234456654210-034444310151343100028889888744888897499998
Q gi|254780405|r 102 IFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 102 ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
-+-+||..-.+. .-.++.|+||.|=.=. +..+-++. .....|+++|..++-
T Consensus 126 PIl~DAr~P~~Y~~lv~~VD~ifqDvaQ~-~Qa~i~~~--Na~~FLk~gG~~~l~ 177 (229)
T pfam01269 126 PILEDARHPQKYRMLVEMVDVIFADVAQP-DQARILAL--NAKYFLKNGGYFMIS 177 (229)
T ss_pred EEECCCCCHHHHHHHCCCCCEEEECCCCH-HHHHHHHH--HHHHHHHCCCEEEEE
T ss_conf 57667787567654255666899627877-78999999--999861269889999
No 209
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=94.59 E-value=0.037 Score=33.68 Aligned_cols=110 Identities=27% Similarity=0.354 Sum_probs=53.5
Q ss_pred CCEEEECCCCCCCCHHH--HHCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCC--
Q ss_conf 96786110012221001--101687330111000123566-7642001332210022344566-54210034444310--
Q gi|254780405|r 49 STRMLNIFAGTGSVGFE--ALSRGCHYVLFVDNNSESIRL-IRRNSELLGVEKNCNIFFRDVL-RLGKIGNISPFQLV-- 122 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiE--alSrGA~~v~~vE~~~~a~~~-lk~N~~~~~~~~~~~ii~~D~~-~~~~~~~~~~fDiI-- 122 (189)
|+++|=+ ||=.==+| ||+.||++|+.||.++-.+.- .+..+.. +...|.. +|.+ -.++||++
T Consensus 2 gk~glVv--GS~~PWvE~~aL~~GA~~vlTvEYn~l~i~~~~~~rlss--------i~p~ef~~~~~~--~~~~FD~a~S 69 (177)
T pfam03269 2 GKSGVVI--GSMQPWVEVSALQNGASKILTVEYNKLTIQEEFRDRLSS--------ILPTDFAKNFKK--YAESFDFAAS 69 (177)
T ss_pred CCEEEEE--CCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCC--------CCHHHHHHHHHH--HCCCEEEEEE
T ss_conf 9518998--477539999999818873489972355566133210011--------568899999875--2353238999
Q ss_pred -----------CCCH--HHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEE
Q ss_conf -----------1513--431000288898887448888974999981778886757885799983418569
Q gi|254780405|r 123 -----------YLDP--PYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTK 180 (189)
Q Consensus 123 -----------f~DP--PY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~yG~t~ 180 (189)
|=|| |. +.. +.+..|. .+|+++|++++--+-.. +....-.+|.||..+
T Consensus 70 fSSiEH~GLGRYGDpidp~--Gdl-k~m~~i~--~~Lk~~G~l~l~vPiG~-----d~v~fN~HRiYG~~R 130 (177)
T pfam03269 70 FSSIEHSGLGRYGDPIDPI--GDL-REMLKIK--CVLKKGGLLFLGLPLGT-----DAIIFNAHRIYGSVR 130 (177)
T ss_pred EEEEEECCCCCCCCCCCCC--CCH-HHHHHHH--HHHCCCCEEEEEECCCC-----CCEEEECCEEECHHH
T ss_conf 6124440565568977985--109-9999999--86178967999953777-----616870340234668
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=94.52 E-value=0.013 Score=36.42 Aligned_cols=57 Identities=14% Similarity=0.287 Sum_probs=47.7
Q ss_pred EEEECCCCCCCCHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHH
Q ss_conf 7861100122210011016873---301110001235667642001332210-02234456
Q gi|254780405|r 51 RMLNIFAGTGSVGFEALSRGCH---YVLFVDNNSESIRLIRRNSELLGVEKN-CNIFFRDV 107 (189)
Q Consensus 51 ~vlDlfaGsG~lgiEalSrGA~---~v~~vE~~~~a~~~lk~N~~~~~~~~~-~~ii~~D~ 107 (189)
.++|++|.-|..++-+...++. +|+++|-+|.+++.+++|++.++..+. +++++.-+
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~~A~ 61 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLNAAV 61 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEEE
T ss_conf 9787017704799999974178873189986895799999986203787873289973000
No 211
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.031 Score=34.14 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999877633364558967861100122210011016873301110001235
Q gi|254780405|r 34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESI 84 (189)
Q Consensus 34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~ 84 (189)
.+-.+|.+..|.. .++++.|+|+||+.|...+. .+++.-|+++..+
T Consensus 14 ~l~~~i~~~lP~~---~~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lv 59 (274)
T COG0338 14 KLLDQIIPHLPEG---VSYIEPFVGGGAVFINLAAK--KKYILNDINPDLV 59 (274)
T ss_pred HHHHHHHHHCCCC---CEEECCCCCCCEEEEEHHHH--HHHHHHCCCHHHH
T ss_conf 8999999858887---61637766742010323022--4466750788999
No 212
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.48 E-value=0.16 Score=29.92 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=74.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 8967861100122210011016---8733011100012356676420013322100223445665421003-44443101
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR---GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN-ISPFQLVY 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr---GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~-~~~fDiIf 123 (189)
..-++||+-||.|-.=++|+-. +..++..-|.++..++.-++-++..++++-+++.++||++...... ..+-+++.
T Consensus 135 ~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~I 214 (311)
T pfam12147 135 RPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLAI 214 (311)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEEE
T ss_conf 95699985168616299999857988745885148887799999999974962000674057679767632699997899
Q ss_pred CCHHHH----HCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 513431----00028889888744888897499998
Q gi|254780405|r 124 LDPPYG----QGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 124 ~DPPY~----~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+-==|+ .......|.-+.. .+.++|.+|.-
T Consensus 215 VSGLyELF~dN~lv~~sl~Gl~~--ai~~gGyLIYT 248 (311)
T pfam12147 215 VSGLYELFPDNDLVRRSLAGLAQ--AVEPGGYLIYT 248 (311)
T ss_pred EECHHHHCCCHHHHHHHHHHHHH--HCCCCCEEEEC
T ss_conf 70126636872999999999997--50899789982
No 213
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=94.35 E-value=0.031 Score=34.09 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHHH--CCCCCCCCCEEEECCCCCCCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99987763--3364558967861100122210011016873--3011100012356676420013322100223445665
Q gi|254780405|r 34 ALFDILTH--VYPVFLDSTRMLNIFAGTGSVGFEALSRGCH--YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 34 alFniL~~--~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~--~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
|.|=+++- .+...-.|..||||+|--|.=+=-|++.++. .|++||+.+-- -+-. .|+..++||...
T Consensus 16 A~fKL~qln~~~kLik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~k---------~FP~-~nv~fi~GDftd 85 (192)
T TIGR00438 16 ASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------GFPI-ENVDFIRGDFTD 85 (192)
T ss_pred HHHHHHHHCCCCCCEECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCC---------CCCC-CCEEEEECCCCC
T ss_conf 678999850215611078867865789873877887760685338998545578---------8564-661475447678
Q ss_pred ------HHHHCCC--CCCCCCCCCH-HH----H-------HCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf ------4210034--4443101513-43----1-------0002888988874488889749999
Q gi|254780405|r 110 ------LGKIGNI--SPFQLVYLDP-PY----G-------QGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 110 ------~~~~~~~--~~fDiIf~DP-PY----~-------~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+++.... +++|+|..|. |= . ..+.+..|+... ..|++.|=+++
T Consensus 86 ee~l~ki~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~--~vL~~~Gnfvv 148 (192)
T TIGR00438 86 EEVLNKILERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAK--EVLKPKGNFVV 148 (192)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHCCCCEEE
T ss_conf 7899999985789874377898526888789875434437999999999999--98615898999
No 214
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.33 E-value=0.036 Score=33.70 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=66.6
Q ss_pred EECCCCCCCCCCHHHH--HHHHHHHHHHCCCCCC-CCCEEEECCCCCCCCHHHHHCCCC----CCHHHHHHHHHHHHHHH
Q ss_conf 4437888867785899--9999987763336455-896786110012221001101687----33011100012356676
Q gi|254780405|r 16 LHTPQNRSIRPSDSRT--KKALFDILTHVYPVFL-DSTRMLNIFAGTGSVGFEALSRGC----HYVLFVDNNSESIRLIR 88 (189)
Q Consensus 16 l~~~~~~~~RPt~~~v--realFniL~~~~~~~~-~~~~vlDlfaGsG~lgiEalSrGA----~~v~~vE~~~~a~~~lk 88 (189)
-..|.+.---|.+.|. ---|-+.|....+... .+...||+ |+|+--|--|- |. -.-+.-|.|+.+++.++
T Consensus 43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDI--GvGAnCIYPli-G~~eYgwrfvGseid~~sl~sAk 119 (292)
T COG3129 43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDI--GVGANCIYPLI-GVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE--CCCCCCCCCCC-CCEEECCEEECCCCCHHHHHHHH
T ss_conf 5178877389999736799999999874389877676478850--45764200213-32121220015746877888889
Q ss_pred HHHCCC-CCCCCHHHHH-HHHHHHHH--HCCCCCCCCCCCCHHHHHC
Q ss_conf 420013-3221002234-45665421--0034444310151343100
Q gi|254780405|r 89 RNSELL-GVEKNCNIFF-RDVLRLGK--IGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 89 ~N~~~~-~~~~~~~ii~-~D~~~~~~--~~~~~~fDiIf~DPPY~~~ 131 (189)
.++..+ +++..+++.. .|-..+++ ....+.||...++|||...
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred HHHHCCCCHHHHEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf 99870904153336775268543416510344333057518983020
No 215
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=94.29 E-value=0.029 Score=34.28 Aligned_cols=89 Identities=9% Similarity=0.109 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 89999999877633364558967861100122210011016-8-733011100012356676420013322100223445
Q gi|254780405|r 29 SRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR-G-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 29 ~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr-G-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
=.+.|.+ +.|.. -.+..++|.=-|.|.-+-+-|++ + ..+++++|.|+.|++.+++.++.. .+++++++++
T Consensus 7 Vll~Evi-~~L~~-----~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~--~~r~~~~~~n 78 (310)
T pfam01795 7 VLLQEVV-ELLNI-----KPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPF--KGRVTLIHSN 78 (310)
T ss_pred CCHHHHH-HHCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC--CCCEEEEECC
T ss_conf 1199999-72683-----89999999588971999999984899997999989899999999853025--8858999253
Q ss_pred HHH---HHHHCCCCCCCCCCCC
Q ss_conf 665---4210034444310151
Q gi|254780405|r 107 VLR---LGKIGNISPFQLVYLD 125 (189)
Q Consensus 107 ~~~---~~~~~~~~~fDiIf~D 125 (189)
..+ +++.....++|-|++|
T Consensus 79 F~~l~~~l~~~~~~~vdGil~D 100 (310)
T pfam01795 79 FANLFAYLKELGVGKVDGILFD 100 (310)
T ss_pred HHHHHHHHHHCCCCCCCEEEEE
T ss_conf 7579999987598766789996
No 216
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=94.11 E-value=0.031 Score=34.12 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH---HHHHC----CHHHHHHHHHHC-C
Q ss_conf 301110001235667642001332210022344566542100344443101513---43100----028889888744-8
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP---PYGQG----LAQQALAIIDKE-G 144 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP---PY~~~----~~~~~l~~l~~~-~ 144 (189)
+|+++|+..+|+...++-++..++.++++++++.=.++.+.....+.|.+..+= |-++. .....+..|.+. .
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~~~tTi~Al~~al~ 80 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSITTKPDTTLEAIKKLLE 80 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 95799609999999999999659875689997798889863764676689996676889998758777209999999999
Q ss_pred CCCCCEEEEEE
Q ss_conf 88897499998
Q gi|254780405|r 145 WLEPNALVIIE 155 (189)
Q Consensus 145 ~L~~~gliiiE 155 (189)
+|+++|+|.+-
T Consensus 81 lL~~gG~i~i~ 91 (140)
T pfam06962 81 LLKPGGLIILV 91 (140)
T ss_pred HHCCCCEEEEE
T ss_conf 63669899999
No 217
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=94.05 E-value=0.031 Score=34.15 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100122210011016--87330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
...+++|++.|+|.++.+.+.+ +. +++..|. |.++..++. .+++++..+|.++-.+ ..|++++-
T Consensus 101 ~~~~vvDvGGG~G~~~~~i~~~~P~l-~~~v~Dl-p~v~~~a~~-------~~rv~~~~gdff~~~P-----~aD~y~l~ 166 (239)
T pfam00891 101 GLSSLVDVGGGTGALAAAIVRAYPHI-KGIVFDL-PHVIADAPS-------ADRVEFVGGDFFESVP-----EADAILLK 166 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCC-EEEEEEC-HHHHHHCCC-------CCCEEEECCCCCCCCC-----CCCEEEEE
T ss_conf 78768996798189999999988998-3898646-877862764-------6854884487777888-----85177640
Q ss_pred HH---HHHCCHHHHHHHHHHCCCCCCCEEEE-EEC
Q ss_conf 34---31000288898887448888974999-981
Q gi|254780405|r 126 PP---YGQGLAQQALAIIDKEGWLEPNALVI-IEE 156 (189)
Q Consensus 126 PP---Y~~~~~~~~l~~l~~~~~L~~~glii-iE~ 156 (189)
=- |.+....++|..+.+ .++++|.++ +|.
T Consensus 167 ~vLH~w~d~~~~~iL~~~~~--al~~~grllI~e~ 199 (239)
T pfam00891 167 WVLHDWSDEDCVKILKRCYE--ALPPGGKVIVVEM 199 (239)
T ss_pred HHHCCCCHHHHHHHHHHHHH--HCCCCCEEEEEEE
T ss_conf 14315999999999999999--7799988999974
No 218
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.04 E-value=0.049 Score=32.93 Aligned_cols=75 Identities=8% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8967861100122210011016-8733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.+.++.|.+|--+-+++.++-+ -++.++++|.++..++.+.+|+...++.+++++.++|.+..++.. ..+|.|.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~--d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE--DEIDVIVI 91 (226)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEEEE
T ss_conf 59945532676257689999659832689831066789999998874588520777526873125766--77687999
No 219
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=93.94 E-value=0.051 Score=32.86 Aligned_cols=106 Identities=20% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 999999877633364558967861100122210011016--873301110001235667642001332210022344566
Q gi|254780405|r 31 TKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 31 vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
-+.++|+-+-.. .-.-+++++++|..|- -|-||.+ ......+||++..|++.+++.+. ..+++++.+.
T Consensus 29 sn~~~f~~~l~~---~~~ikSilE~GcNIGl-NL~ALk~L~P~~~l~gIEIN~~A~~~lk~~~~------~~~i~n~SIl 98 (204)
T TIGR03587 29 AKLAMFARALNR---LPKIASILELGANIGM-NLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLF 98 (204)
T ss_pred HHHHHHHHHHHC---CCCCCEEEEECCCCCH-HHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC------CCEEEECCCC
T ss_conf 899999999835---7888826896688477-69999874874404999539999999986589------7269965334
Q ss_pred HHHHHCCCCCCCCCCC-------CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 5421003444431015-------13431000288898887448888974999981
Q gi|254780405|r 109 RLGKIGNISPFQLVYL-------DPPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 109 ~~~~~~~~~~fDiIf~-------DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
++ ....+||++|. +|-+ ...+.+.|.. +...=+++.|.
T Consensus 99 d~---~~~~~~DLv~t~GVLIHinP~~----L~~vy~~l~~---~s~kyili~EY 143 (204)
T TIGR03587 99 DP---FKDNFFDLVLTKGVLIHINPDN----LPTAYRELYR---CSNRYILIAEY 143 (204)
T ss_pred CC---CCCCCEEEEEEEEEEEEECHHH----HHHHHHHHHH---HHCCEEEEEEE
T ss_conf 66---7787423899830899978899----9999999998---52055999994
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.82 E-value=0.12 Score=30.72 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCCEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC---C
Q ss_conf 896786110012221001-101687330111000123566764200133221002234456654210034444310---1
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV---Y 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI---f 123 (189)
+.+.||+++=|.|---++ |..+--...+.+|.-..-+..+-..++..++. |++++.+|+..++.......+|-| |
T Consensus 344 k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~-Niri~~~D~~~ll~~lp~~sld~i~ilf 422 (503)
T PRK01544 344 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 422 (503)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 670899953698799999999689888899940656699999999986997-5998733599999856620404167878
Q ss_pred CCHHHHHC-------CHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 51343100-------0288898887448888974999981
Q gi|254780405|r 124 LDPPYGQG-------LAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 124 ~DPPY~~~-------~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
=|| |.+. .-.+.++.+.+ .|+++|.+.+-+
T Consensus 423 PDP-WpKkRH~KRRli~~efl~~l~~--~Lk~~G~l~~aT 459 (503)
T PRK01544 423 PDP-WIKNKQKKKRIFNKERLKILQD--KLKDNGNLVFAS 459 (503)
T ss_pred CCC-CCCCCHHHHCCCCHHHHHHHHH--HHCCCCEEEEEC
T ss_conf 999-9755322001779999999999--714698899976
No 221
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=93.72 E-value=0.018 Score=35.58 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH----H---------CCHH-HHHHHHHHCCCC-CCCEEEEEECCC
Q ss_conf 0022344566542100344443101513431----0---------0028-889888744888-897499998177
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDPPYG----Q---------GLAQ-QALAIIDKEGWL-EPNALVIIEEYA 158 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~----~---------~~~~-~~l~~l~~~~~L-~~~gliiiE~~~ 158 (189)
++.++|+|-...+.......-|+||+||||. + +..+ +-..+..-...| ++-|+-++....
T Consensus 202 n~~f~c~~F~~~~~~~~~~sP~fVY~DPPY~p~~~~~~Ft~Y~~~~F~~~~q~~La~~~~~l~~~rg~~~~~SN~ 276 (327)
T TIGR00571 202 NTTFLCGSFEKILEMVDRDSPDFVYLDPPYLPLSATANFTGYHKNGFDEDEQKRLANFCKSLSDERGIKFLLSNS 276 (327)
T ss_pred CCEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 815752566788623037888378757789985232131156557888899999999998754530660477456
No 222
>KOG1201 consensus
Probab=93.67 E-value=0.029 Score=34.28 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999877633364558967861100122---210011016873301110001235667642001332210022344566
Q gi|254780405|r 32 KKALFDILTHVYPVFLDSTRMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 32 realFniL~~~~~~~~~~~~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
=+|++-++-+.-..++.|..+|=-++|+| .+++|.+.||| +++.+|.+++.+.-..+.+...| +++.+.+|+.
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis 96 (300)
T KOG1201 21 LESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDIS 96 (300)
T ss_pred HHHHHHHHCCCCHHHCCCCEEEEECCCCHHHHHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHHHCC---CEEEEEECCC
T ss_conf 9999987555433440698899968986078999999997078-48999556512399999998448---5258995589
Q ss_pred H
Q ss_conf 5
Q gi|254780405|r 109 R 109 (189)
Q Consensus 109 ~ 109 (189)
+
T Consensus 97 ~ 97 (300)
T KOG1201 97 D 97 (300)
T ss_pred C
T ss_conf 8
No 223
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=93.47 E-value=0.042 Score=33.31 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=33.5
Q ss_pred HHHHCCCCCCCCHHHHHHHHH--------HHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH--CCCCCCCEEEEEEC
Q ss_conf 642001332210022344566--------5421003444431015134310002888988874--48888974999981
Q gi|254780405|r 88 RRNSELLGVEKNCNIFFRDVL--------RLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK--EGWLEPNALVIIEE 156 (189)
Q Consensus 88 k~N~~~~~~~~~~~ii~~D~~--------~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~--~~~L~~~gliiiE~ 156 (189)
+.|+..+..+.+..++-++.. ++.... ..+||+|.+||||- .++++.+.+. ..+++++|.+++-.
T Consensus 48 ~~~v~LfEyD~RF~~~~~~FvfYDyn~P~~lp~~l-~~~fD~vi~DPPFL---seec~~K~a~t~~~L~k~~~kli~~T 122 (161)
T pfam10237 48 TKNVYLLEYDKRFAVYGGEFVFYDYNKPLELPEQL-KGKFDRVIADPPFL---SEECLTKTAITIKLLLKPDSKLLLCT 122 (161)
T ss_pred CCCEEEEEECHHHHHCCCCEEECCCCCCCCCHHHH-HCCCCEEEECCCCC---CHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 77379965430587679941677789801087997-08678899899998---99999999999999808998799934
No 224
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.45 E-value=0.12 Score=30.72 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7888867785899999998776333645589678611001222100110168733011100012356676420013
Q gi|254780405|r 19 PQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 19 ~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
......+| +.+--+-+-..|... ...+..|||.|+|||..++.|..-| .+.+.+|.+++.++.+.+=+...
T Consensus 197 ~~~~~~hp-~~~P~~l~~r~i~~~---s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 197 SYGKKLHP-AQKPLALIERLIRDY---SFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHC---CCCCCEEEECCCCCCCHHHHHHHHC-CCEECCCCCHHHHHHHHHHHHHH
T ss_conf 44445787-415588999999955---8877788741768871999999811-41343523488999999999865
No 225
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=93.10 E-value=0.091 Score=31.36 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 7785899999998776333645589678611001222100110168--73301110001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG--CHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG--A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
..++=.+.|.+ +.|.. ..+..++|.=-|.|.-+-+-|.+- -.+++++|.|+.|++.+++.++.. .+++++
T Consensus 6 ~H~PVll~Evl-~~L~~-----~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~--~~r~~~ 77 (309)
T PRK00050 6 KHIPVLLDEVV-DGLAI-----KPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPF--GGRFTI 77 (309)
T ss_pred CCCCCCHHHHH-HHCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCEEE
T ss_conf 50663189999-83682-----89999999388983999999972799988999989889999999986525--882899
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf 344566542100-34444310151
Q gi|254780405|r 103 FFRDVLRLGKIG-NISPFQLVYLD 125 (189)
Q Consensus 103 i~~D~~~~~~~~-~~~~fDiIf~D 125 (189)
++++.-++.... ...++|-|++|
T Consensus 78 ~~~nF~~l~~~l~~~~~vdgil~D 101 (309)
T PRK00050 78 VHGNFSDLAEYLAEVGKVDGILLD 101 (309)
T ss_pred EECCHHHHHHHHHHCCCCCEEEEE
T ss_conf 927798899999863887789997
No 226
>KOG3178 consensus
Probab=93.02 E-value=0.3 Score=28.29 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=76.2
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHH-HH------HHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 867443788886778589999999-87------76333645589678611001222100110168733011100012356
Q gi|254780405|r 13 RRLLHTPQNRSIRPSDSRTKKALF-DI------LTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIR 85 (189)
Q Consensus 13 g~~l~~~~~~~~RPt~~~vrealF-ni------L~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~ 85 (189)
|..+.---..+.||+.++.+---| +. +....+ +=.-...+|+++|.|.+.=+.+| -..++-.++.|...+-
T Consensus 136 G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~ 213 (342)
T KOG3178 136 GMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVL 213 (342)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCHHHHHHHHHH-HCCCCCEEECCHHHHH
T ss_conf 331330114552237899999888878888864201026-55676688758747699999997-5887725514789998
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH---HHHCCHHHHHHHHHHCCCCCCCEEEEE-EC
Q ss_conf 676420013322100223445665421003444431015134---310002888988874488889749999-81
Q gi|254780405|r 86 LIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP---YGQGLAQQALAIIDKEGWLEPNALVII-EE 156 (189)
Q Consensus 86 ~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~gliii-E~ 156 (189)
....++. -+ ++-+.+|-++- ..+-|+||+-== +.++...+.|+.+.+ -|.|+|.|++ |.
T Consensus 214 ~~a~~~~-~g----V~~v~gdmfq~-----~P~~daI~mkWiLhdwtDedcvkiLknC~~--sL~~~GkIiv~E~ 276 (342)
T KOG3178 214 AAAPYLA-PG----VEHVAGDMFQD-----TPKGDAIWMKWILHDWTDEDCVKILKNCKK--SLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHC-CC----CCEECCCCCCC-----CCCCCEEEEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEEEEEC
T ss_conf 5223206-78----65123645345-----887675998700056876889999999998--5899888999835
No 227
>PTZ00146 fibrillarin; Provisional
Probab=93.00 E-value=0.14 Score=30.28 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 778589999999877633364558967861100122210011016--87-330111000123566764200133221002
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
-|--|++-.||.+=|.+. + .-.++.||=|+|.||. +.--+|- |. -.|++||.++++.+-+-.-++ .-.|+-
T Consensus 114 nPfRSKLAAaIl~Gl~~i-~-Ik~GskVLYLGAasGT-TVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~---~R~NIv 187 (296)
T PTZ00146 114 NPFRSKLAAAIYGGVASI-P-IKPGSKVLYLGAASGT-TVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAK---RRTNIV 187 (296)
T ss_pred CCCCHHHHHHHHCCCCCC-C-CCCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH---CCCCCE
T ss_conf 755018899997696444-4-3799989985146798-655666501788619999706466889999972---279833
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 234456654210-034444310151343100028889888744888897499998
Q gi|254780405|r 102 IFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 102 ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
-+-.|+..-.+. ...+..|+||.|=+ +-.+.-+-.+....+|+++|.+++-
T Consensus 188 PIleDAr~P~kYr~lV~~VDvIf~DVA---QpdQarI~~~Na~~FLK~gG~~~i~ 239 (296)
T PTZ00146 188 PIIEDARYPQKYRMLVPMVDCIFADVA---QPDQARIVALNAQHFLKNGGHFVIS 239 (296)
T ss_pred EEECCCCCHHHHHHHCCCCCEEEECCC---CHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 577778974675542455558996178---7658999999999853169889999
No 228
>PRK10904 DNA adenine methylase; Provisional
Probab=92.81 E-value=0.028 Score=34.38 Aligned_cols=47 Identities=28% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99987763336455896786110012221001101687330111000123566
Q gi|254780405|r 34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRL 86 (189)
Q Consensus 34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~ 86 (189)
.+.+.|...+|. ..+..+.|+|+||+-+- ..+.+++.-|+|++.+..
T Consensus 16 ~l~~~i~~~~P~---~~~Y~EPF~GgGaVff~---~~~~~~~lnDiN~~LIn~ 62 (271)
T PRK10904 16 PLLDDIKRHLPK---GECLIEPFVGAGSVFLN---TDFSRYILADINSDLISL 62 (271)
T ss_pred HHHHHHHHHCCC---CCCEEEECCCCEEEEEE---CCCCCEEEEECCHHHHHH
T ss_conf 999999986899---89687103374001021---477847988589999999
No 229
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.65 E-value=0.24 Score=28.84 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHC--CCCCCCCCEEEECCCCCCCCHHHHHC---CCCCCHHHHHHHHHHHHH---HHHHHCCCCCCCCHHHHH
Q ss_conf 9999877633--36455896786110012221001101---687330111000123566---764200133221002234
Q gi|254780405|r 33 KALFDILTHV--YPVFLDSTRMLNIFAGTGSVGFEALS---RGCHYVLFVDNNSESIRL---IRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 33 ealFniL~~~--~~~~~~~~~vlDlfaGsG~lgiEalS---rGA~~v~~vE~~~~a~~~---lk~N~~~~~~~~~~~ii~ 104 (189)
.|+|..|... ...++.-+++||.++|.|. |+-|+- -.-+.++.+|.++..-++ +.+|+..-....+..-+.
T Consensus 96 asv~asL~~L~~~~~dfapqsiLDvG~GPgt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 96 ASVRASLDELQKRVPDFAPQSILDVGAGPGT-GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999999999974888686102003778752-123320337880221234048999999999986045334777788650
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CHHHHHCC---HHHHHHHHHHCCCCCCCEEE-EEECCC
Q ss_conf 45665421003444431015-13431000---28889888744888897499-998177
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYL-DPPYGQGL---AQQALAIIDKEGWLEPNALV-IIEEYA 158 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~-DPPY~~~~---~~~~l~~l~~~~~L~~~gli-iiE~~~ 158 (189)
.| .+......-|+++++ |-=-.++. .+..++.+. +++.+||.+ |+|...
T Consensus 175 ~d---Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw--~l~~~gg~lVivErGt 228 (484)
T COG5459 175 ED---RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLW--NLLAPGGHLVIVERGT 228 (484)
T ss_pred HH---CCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHH--HHCCCCCEEEEEECCC
T ss_conf 21---047883223633343544443557431889999999--8606897499971798
No 230
>KOG3201 consensus
Probab=92.64 E-value=0.069 Score=32.07 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCCCCCCEEEECCCCCCCC-HH-HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6455896786110012221-00-110168733011100012356676420013322--1002234456654210034444
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSV-GF-EALSRGCHYVLFVDNNSESIRLIRRNSELLGVE--KNCNIFFRDVLRLGKIGNISPF 119 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~l-gi-EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~--~~~~ii~~D~~~~~~~~~~~~f 119 (189)
+..+.|..+|+|++|--++ || -|.+-.-+.|...|-|.++++.+++-...+... ..+.+..-+.-.........+|
T Consensus 25 ~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201 25 PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCC
T ss_conf 06776788987267446554552045358735887169789999799998512002565000347877644888751702
Q ss_pred CCCCC-CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 31015-13431000288898887448888974999981778
Q gi|254780405|r 120 QLVYL-DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 120 DiIf~-DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
|+|.+ |=-|-++.-+.+.+.|.. +|+|.|--++-.++.
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~--lL~p~g~Al~fsPRR 143 (201)
T KOG3201 105 DIILAADCLFFDEHHESLVDTIKS--LLRPSGRALLFSPRR 143 (201)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHH--HHCCCCCEEEECCCC
T ss_conf 279860102588999999999999--858466616766755
No 231
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.57 E-value=0.56 Score=26.66 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=63.2
Q ss_pred CCCEEEECCCCCC----CCHH---HHHCCCCC---CHHHHHHHHHHHHHHHHHHCC---C-CCC------------CCHH
Q ss_conf 8967861100122----2100---11016873---301110001235667642001---3-322------------1002
Q gi|254780405|r 48 DSTRMLNIFAGTG----SVGF---EALSRGCH---YVLFVDNNSESIRLIRRNSEL---L-GVE------------KNCN 101 (189)
Q Consensus 48 ~~~~vlDlfaGsG----~lgi---EalSrGA~---~v~~vE~~~~a~~~lk~N~~~---~-~~~------------~~~~ 101 (189)
..-+++-.+|.|| ++++ |+.-++.. ++++.|+|..+++.+++=+=. + ++. +..+
T Consensus 99 ~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEEE
T ss_conf 97489977788882089999999997433489856999983999999999868989899846999999988065698899
Q ss_pred HHHHHHHH--------HHH-HCCCCCCCCCCC-------CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 23445665--------421-003444431015-------13431000288898887448888974999981778886757
Q gi|254780405|r 102 IFFRDVLR--------LGK-IGNISPFQLVYL-------DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVG 165 (189)
Q Consensus 102 ii~~D~~~--------~~~-~~~~~~fDiIf~-------DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~ 165 (189)
+..++.+ ++. .....+||+||+ ||+ .-.++++.+.. .|+|+|++++-|+... ....
T Consensus 179 -v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~----~~~~vl~~l~~--~L~pgG~L~lG~sEsl-~~~~ 250 (264)
T smart00138 179 -VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP----TQRKLLNRFAE--ALKPGGYLFLGHSESL-PGLT 250 (264)
T ss_pred -ECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHH----HHHHHHHHHHH--HHCCCCEEEEECCCCC-CCCC
T ss_conf -98899850918327899998777884199976323545999----99999999999--8389939998276668-8888
Q ss_pred CCCEEEEE
Q ss_conf 88579998
Q gi|254780405|r 166 AAFHFLQE 173 (189)
Q Consensus 166 ~~~~~~~~ 173 (189)
..|+.+..
T Consensus 251 ~~F~~v~~ 258 (264)
T smart00138 251 DKFEPIEG 258 (264)
T ss_pred CCEEECCC
T ss_conf 77288387
No 232
>KOG2352 consensus
Probab=92.37 E-value=0.21 Score=29.22 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-----CCCCCCCCC
Q ss_conf 6786110012221001-1016873301110001235667642001332210022344566542100-----344443101
Q gi|254780405|r 50 TRMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG-----NISPFQLVY 123 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~-----~~~~fDiIf 123 (189)
...|=++=|+|.++-- -.|++-..+++||.||.++++++++.....- ++.++.-.|...+++.. ....||+++
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred CCEEEEECCCCCCCCCEEEECCCCCEEEEEECHHHHHCCHHHHCHHHH-HHHHHHHHHCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 757998328775400200205734115999781684055765253565-5220037303599999861564466875799
Q ss_pred CCH----HHHHC------CHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 513----43100------0288898887448888974999981
Q gi|254780405|r 124 LDP----PYGQG------LAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 124 ~DP----PY~~~------~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
.|= |-+.. ..+..|. ..+..|.|.|++++.-
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~--~~k~~l~p~g~f~inl 416 (482)
T KOG2352 376 VDVDSKDSHGMQCPPPAFVAQVALQ--PVKMILPPRGMFIINL 416 (482)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHH--HHHHCCCCCCEEEEEE
T ss_conf 9778998566728964787899988--7761068663489987
No 233
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=92.18 E-value=0.036 Score=33.74 Aligned_cols=48 Identities=38% Similarity=0.459 Sum_probs=31.5
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87763336455896786110012221001101687330111000123566
Q gi|254780405|r 37 DILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRL 86 (189)
Q Consensus 37 niL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~ 86 (189)
..|...++. ....+++|.|+|+|++++.+..++ .+|+..|.++..+..
T Consensus 10 ~~I~~~~p~-~~~~~yvEPF~GggsV~~~~~~~~-~~~~iNDin~~l~~~ 57 (254)
T pfam02086 10 PEIKEHIPK-GGDRRFVEPFAGGGAVFFEAKKRG-KKVLINDINYDLINL 57 (254)
T ss_pred HHHHHHCCC-CCCCEEEEECCCHHHHHHHHHCCC-CEEEEEECCHHHHHH
T ss_conf 999985685-789999983687779999764168-869999688899999
No 234
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=92.00 E-value=0.16 Score=29.91 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 0022344566542100344443101513431
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDPPYG 129 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~ 129 (189)
.+++.+.|....+.... .+-|+||+||||.
T Consensus 158 ~~~i~~~d~~~~i~~~~-~~~dfvYlDPPY~ 187 (254)
T pfam02086 158 GATIECGDFDAVLLAAN-ISDDFVYLDPPYN 187 (254)
T ss_pred CCEEEECCHHHHHHHCC-CCCCEEEECCCCC
T ss_conf 99899889999996427-8896899789987
No 235
>TIGR00571 dam DNA adenine methylase; InterPro: IPR012326 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes . N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognize a specific sequence in DNA and methylate an adenine in that sequence. It has been shown , , , that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A . The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements . According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=91.82 E-value=0.12 Score=30.62 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCCCCC---CEEEECCCCCCCCHHHHHCCC--CCCHHHHHHHHHHHH---HHHHHHC
Q ss_conf 999998776333645589---678611001222100110168--733011100012356---6764200
Q gi|254780405|r 32 KKALFDILTHVYPVFLDS---TRMLNIFAGTGSVGFEALSRG--CHYVLFVDNNSESIR---LIRRNSE 92 (189)
Q Consensus 32 realFniL~~~~~~~~~~---~~vlDlfaGsG~lgiEalSrG--A~~v~~vE~~~~a~~---~lk~N~~ 92 (189)
|.+|.+-|...+|..+.+ ..++|.|+|+||+.+...... -+.++.-|.+++-+. +++.+..
T Consensus 11 K~~Ll~~i~~~lPk~~~~~~~~~~vEPFvGgGAv~~~~~~~~~~lk~~~l~DiN~dLi~~Y~~~k~~~~ 79 (327)
T TIGR00571 11 KTSLLPEIKKHLPKDFNESNIKCLVEPFVGGGAVFFNLNPKREELKDVLLSDINEDLINLYKAIKNNVD 79 (327)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCH
T ss_conf 776789999855524577763045347641778876642687113401453288779999999825855
No 236
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=91.10 E-value=0.086 Score=31.48 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC-CCC-----CCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8677858999999987763336455896786110012221001101-687-----3301110001235667642001332
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS-RGC-----HYVLFVDNNSESIRLIRRNSELLGV 96 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS-rGA-----~~v~~vE~~~~a~~~lk~N~~~~~~ 96 (189)
+---|+.-+.|-+-.+--|... .-..+.|.+||+|++-++... .|. ..-..-|.+...+..++-|.-..++
T Consensus 201 g~~~~p~~~~~~~~~~~~~~~~---~~~~~~d~~cg~g~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~ 277 (516)
T TIGR00497 201 GEFFTPQDVSELLAKIALGGKD---TVDDVYDPCCGSGSLLLQFSKVLGKDKNSLKGYFGQEINLTTYNLCRLNLFLHDI 277 (516)
T ss_pred CCCCCHHHHHHHHHHHHCCCCC---HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCHHCCHHHHHHHHHHHHHHC
T ss_conf 6544625589898876404520---0234443104751367787877323101122220210011034455554555312
Q ss_pred C-CCHHHHHHHHHHHH-------HHCCCCCCCCCCCCHHHHHC
Q ss_conf 2-10022344566542-------10034444310151343100
Q gi|254780405|r 97 E-KNCNIFFRDVLRLG-------KIGNISPFQLVYLDPPYGQG 131 (189)
Q Consensus 97 ~-~~~~ii~~D~~~~~-------~~~~~~~fDiIf~DPPY~~~ 131 (189)
. .+.++.++|...-. .-....+||.+..+|||...
T Consensus 278 ~~~~~~~~~~d~~~~~~~~~~~~~c~~~~~~~~~~~~pp~~~~ 320 (516)
T TIGR00497 278 DYANFNIANGDTLLDPEWEKHYVNCSDDEGFDAVVSNPPYSTK 320 (516)
T ss_pred CCCCCEECCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCEE
T ss_conf 3001000023100362012100124677773245537874200
No 237
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=90.80 E-value=0.87 Score=25.52 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99877633364558967861100122210011016873301110001235667642001
Q gi|254780405|r 35 LFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 35 lFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
++.+.. +..++|.+.||++||.-...+-.+++-++.++.-|..+...+-+++.+++
T Consensus 46 l~~~f~---~g~~kg~~LiDvG~GPtiy~~lsA~~~f~~I~lsDy~~~Nr~el~kWl~~ 101 (261)
T pfam01234 46 LLQTFG---PGGVKGDTLIDIGSGPTIYQLLSACEVFKEIHLSDYLPQNRDELIKWLKK 101 (261)
T ss_pred HHHHHC---CCCCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999837---78746668998478945888876776507178602557679999999706
No 238
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=90.61 E-value=0.59 Score=26.51 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCCEEEECCCCCC----CCHH---HHHCCCC---CCHHHHHHHHHHHHHHHHHHC------CCCCCCCHHHH--------
Q ss_conf 8967861100122----2100---1101687---330111000123566764200------13322100223--------
Q gi|254780405|r 48 DSTRMLNIFAGTG----SVGF---EALSRGC---HYVLFVDNNSESIRLIRRNSE------LLGVEKNCNIF-------- 103 (189)
Q Consensus 48 ~~~~vlDlfaGsG----~lgi---EalSrGA---~~v~~vE~~~~a~~~lk~N~~------~~~~~~~~~ii-------- 103 (189)
..-+++=.+|.|| ++++ |+.-.+. -++++.|+|..+++.+++-+= .+...-..+.+
T Consensus 30 ~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~ 109 (194)
T pfam01739 30 RRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGY 109 (194)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCE
T ss_conf 95599973688995189999999997432578744999973988999999878988999845999999962860789948
Q ss_pred --HHHHHH--------HHHHCCCCCCCCCCCCHH---HHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf --445665--------421003444431015134---3100028889888744888897499998177888675788579
Q gi|254780405|r 104 --FRDVLR--------LGKIGNISPFQLVYLDPP---YGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHF 170 (189)
Q Consensus 104 --~~D~~~--------~~~~~~~~~fDiIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~ 170 (189)
..++.+ ++......+||+||+=== |+...-..+++.+.. .|+|+|++++-|.... ......|+.
T Consensus 110 ~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfCRNVlIYF~~~~~~~vl~~l~~--~L~~gG~L~lG~~Esl-~~~~~~F~~ 186 (194)
T pfam01739 110 RVKPEIKEMVLFEYHNLLDYPPLGDFDVIFCRNVLIYFDEETQRKILNRFAS--ALKPGGYLFLGHSESL-PGLTDLFEL 186 (194)
T ss_pred EECHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEECCHHHHHHHHHHHHH--HHCCCCEEEEECCCCC-CCCCCCCEE
T ss_conf 7688997116685466556887675039998021013799999999999999--8489949998075668-887868078
Q ss_pred EEEEEC
Q ss_conf 998341
Q gi|254780405|r 171 LQERKY 176 (189)
Q Consensus 171 ~~~k~y 176 (189)
+..+.|
T Consensus 187 v~~~~~ 192 (194)
T pfam01739 187 VGSTVY 192 (194)
T ss_pred CCCEEE
T ss_conf 476654
No 239
>pfam02951 GSH-S_N Prokaryotic glutathione synthetase, N-terminal domain.
Probab=90.14 E-value=0.029 Score=34.27 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHH--HHCCCCCCCCCCC--CHHHHHCCHH
Q ss_conf 21001101687330111000123566764200133221002234456--6542--1003444431015--1343100028
Q gi|254780405|r 61 SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV--LRLG--KIGNISPFQLVYL--DPPYGQGLAQ 134 (189)
Q Consensus 61 ~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~--~~~~--~~~~~~~fDiIf~--DPPY~~~~~~ 134 (189)
+|-.||..||- .|.+++.+.-.++ .+.-...+ ..+++...+- +++. +......||+||+ ||||+.+...
T Consensus 22 ~lm~eaq~rg~-~v~~~~~~dL~~~---~~~v~a~~-~~v~~~~~~~~~~~~~~~~~~~L~~fd~v~mRkDPPfD~~Yi~ 96 (119)
T pfam02951 22 AMMLEAQRRGH-ELFYYEPGDLSLR---GGRVRARA-RPLTVRDDPGDWYELGEEERLPLADFDVILMRKDPPFDMEYIY 96 (119)
T ss_pred HHHHHHHHCCC-EEEEECCCCEEEE---CCEEEEEE-EEEEEECCCCCCEEECCCEEECHHHCCEEEEECCCCCCHHHHH
T ss_conf 99999998799-7999800328998---99999999-9999955888746853628972478989999549998889999
Q ss_pred --HHHHHHH
Q ss_conf --8898887
Q gi|254780405|r 135 --QALAIID 141 (189)
Q Consensus 135 --~~l~~l~ 141 (189)
-+|+.+.
T Consensus 97 ~T~lLe~~~ 105 (119)
T pfam02951 97 ATYLLERAE 105 (119)
T ss_pred HHHHHHHHH
T ss_conf 999998775
No 240
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.44 E-value=0.16 Score=29.88 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH-------------HH------------HHHHHHHC-CCCCCCEE
Q ss_conf 100223445665421003444431015134310002-------------88------------89888744-88889749
Q gi|254780405|r 98 KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLA-------------QQ------------ALAIIDKE-GWLEPNAL 151 (189)
Q Consensus 98 ~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~-------------~~------------~l~~l~~~-~~L~~~gl 151 (189)
...+++++|+.+.++......+|+|+.||||..... .. +...+.+. ..+++++.
T Consensus 15 ~~~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~ 94 (302)
T COG0863 15 ELSKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGS 94 (302)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCE
T ss_conf 44455576787887537222587676599734433223322012245665325778888755568999875531525770
Q ss_pred EEEECCC
Q ss_conf 9998177
Q gi|254780405|r 152 VIIEEYA 158 (189)
Q Consensus 152 iiiE~~~ 158 (189)
+++-+.-
T Consensus 95 ~~v~~~~ 101 (302)
T COG0863 95 LYVIDPF 101 (302)
T ss_pred EEEECCC
T ss_conf 7995387
No 241
>KOG1562 consensus
Probab=89.36 E-value=0.79 Score=25.78 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHCC-CCCCCCCEEEECCCCCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCC--CCC-CCH
Q ss_conf 785899999998776333-6455896786110012221001101-68733011100012356676420013--322-100
Q gi|254780405|r 26 PSDSRTKKALFDILTHVY-PVFLDSTRMLNIFAGTGSVGFEALS-RGCHYVLFVDNNSESIRLIRRNSELL--GVE-KNC 100 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~-~~~~~~~~vlDlfaGsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk~N~~~~--~~~-~~~ 100 (189)
-.+.|.+-|--.|+.|.. ....+-+.+|=+|.|-|.+-=|-.. .-...++.+|.|...++.-++-...+ +.+ .++
T Consensus 98 qlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v 177 (337)
T KOG1562 98 QLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKV 177 (337)
T ss_pred ECCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 77753320055433326344578987479994488413011310346010675433678999999873887536789714
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCH--HH--HHCCHH-HHHHHHHHCCCCCCCEEEEEE
Q ss_conf 22344566542100344443101513--43--100028-889888744888897499998
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDP--PY--GQGLAQ-QALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DP--PY--~~~~~~-~~l~~l~~~~~L~~~gliiiE 155 (189)
.+.-+|.+.+++.....+||+|..|- |- +..+++ ...+.+.. -|+++|+++..
T Consensus 178 ~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~--aLk~dgv~~~q 235 (337)
T KOG1562 178 KLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLD--ALKGDGVVCTQ 235 (337)
T ss_pred EEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH--HHCCCCEEEEE
T ss_conf 89955689999870369741899716776755889888889999998--51799279973
No 242
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=89.27 E-value=0.29 Score=28.36 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=70.8
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCC-CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67443788886778589999999877633-364-5589678611001222100110168733011100012356676420
Q gi|254780405|r 14 RLLHTPQNRSIRPSDSRTKKALFDILTHV-YPV-FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 14 ~~l~~~~~~~~RPt~~~vrealFniL~~~-~~~-~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~ 91 (189)
.+|..|.+.-.| .+-++-||+--.|... ... --.|.+.+||+|--|.-+-....||. .|++||+-+-+-....
T Consensus 175 pRLk~P~~APSR-StLKLEEA~~~Fip~~e~~~rl~~Gm~aVDLGAaPGGWT~qLv~rg~-~V~AVDnG~m~~~L~~--- 249 (356)
T PRK11760 175 PRLKFPADAPSR-STLKLEEAFHVFIPREEWDERLASGMRAVDLGACPGGWTYQLVRRGM-FVTAVDNGPMAESLMD--- 249 (356)
T ss_pred CCCCCCCCCCCH-HHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCC-EEEEECCCCCCHHHHC---
T ss_conf 223689889846-88879999998679867653216997587558699705899997798-8998658767875752---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 01332210022344566542100344443101513
Q gi|254780405|r 92 ELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 92 ~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
..+++-+..|++.|-+. ..++|.+++|-
T Consensus 250 -----~~~V~H~~~dgf~f~P~--~~~vdwlVCDm 277 (356)
T PRK11760 250 -----TGQVEHLRADGFKFRPT--RKNVDWLVCDM 277 (356)
T ss_pred -----CCCEEEEECCCEEECCC--CCCEEEEEEEC
T ss_conf -----88757881467056369--98520899705
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.26 E-value=0.93 Score=25.37 Aligned_cols=121 Identities=19% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 77858999999987763336455896786110012221001101--6873301110001235667642001332210022
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS--RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS--rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
.|--|+.-.++.+=|.. ++. -+|.+||=|+|-||.- .--.| -|...+++||.+++..+-+-.-++. -.|+--
T Consensus 55 np~RSKLaAaIl~Gl~~-~pi-~~g~~VLYLGAasGTT-vSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~P 128 (231)
T COG1889 55 NPRRSKLAAAILKGLKN-FPI-KEGSKVLYLGAASGTT-VSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIP 128 (231)
T ss_pred CCCHHHHHHHHHCCCCC-CCC-CCCCEEEEEECCCCCC-HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH---CCCCEE
T ss_conf 76513779999737002-776-9998789950367985-76777604787089999644469999999874---787400
Q ss_pred HHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 34456654210-03444431015134310002888988874488889749999
Q gi|254780405|r 103 FFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 103 i~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+-+||..-.+. .-.++.|+||.|=- +-.+.-+-.....-.|+++|-+++
T Consensus 129 IL~DA~~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 129 ILEDARKPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EECCCCCCHHHHHHCCCCCEEEEECC---CCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 20136883776531245438998368---810789999889973216973999
No 244
>KOG2360 consensus
Probab=89.00 E-value=0.3 Score=28.32 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=64.9
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999877633364558967861100122210--0110168733011100012356676420013322100223445665
Q gi|254780405|r 32 KKALFDILTHVYPVFLDSTRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 32 realFniL~~~~~~~~~~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
...-|+++-...-.--.|..++|.||--|.=. +.|+.+.-.++.+.|.++...+++++-+...++. .++.+.+|...
T Consensus 197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~ 275 (413)
T KOG2360 197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLN 275 (413)
T ss_pred EECHHHCCHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCC
T ss_conf 70221035365438999882355414665321129988622487213234168899999999871787-45320144447
Q ss_pred HHHHCCCCCCCCCCCCHHH
Q ss_conf 4210034444310151343
Q gi|254780405|r 110 LGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 110 ~~~~~~~~~fDiIf~DPPY 128 (189)
......-+....|.+||+-
T Consensus 276 t~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360 276 TATPEKFRDVTYILVDPSC 294 (413)
T ss_pred CCCCCCCCCEEEEEECCCC
T ss_conf 7781002650599857987
No 245
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=88.73 E-value=0.47 Score=27.12 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH-HHH-HC----CCC-----CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8967861100122210011016873301110001235667-642-00----133-----221002234456654210034
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLI-RRN-SE----LLG-----VEKNCNIFFRDVLRLGKIGNI 116 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~l-k~N-~~----~~~-----~~~~~~ii~~D~~~~~~~~~~ 116 (189)
.+.+|+=-.||.+-=-.-.+++|. +|+.||.++.|++-. ++| +. ..+ ..++++++++|.+.+... ..
T Consensus 37 ~~~rVlVPlCGKs~Dm~wLa~~G~-~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L~~~-~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFALTAA-DL 114 (218)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCC-EEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCHH-HC
T ss_conf 898699948986776999984897-2699835299999999973898630136760377538827996642027863-54
Q ss_pred CCCCCCC
Q ss_conf 4443101
Q gi|254780405|r 117 SPFQLVY 123 (189)
Q Consensus 117 ~~fDiIf 123 (189)
.+||.||
T Consensus 115 g~~DaIy 121 (218)
T PRK13255 115 ADVDAVY 121 (218)
T ss_pred CCCCEEE
T ss_conf 7748899
No 246
>PRK05866 short chain dehydrogenase; Provisional
Probab=88.54 E-value=0.17 Score=29.77 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=45.9
Q ss_pred CCCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 3645589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 43 YPVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 43 ~~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
-|.+++|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++-+.+.+...+. ++..+.+|+.
T Consensus 34 ~P~dL~GKvaLITGassGIG~aiA~~la~~Ga-~Vvl~~R~~~~l~~~~~~i~~~g~--~~~~~~~Dvt 99 (290)
T PRK05866 34 TPVDLTGKRILLTGASSGIGEAAAEKFARRGA-TVVAVARRKDLLDAVADRITAAGG--DAMAIPCDLS 99 (290)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 49789999899908130999999999998699-899998999999999999996499--0899977889
No 247
>KOG3987 consensus
Probab=88.30 E-value=0.62 Score=26.40 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 896786110012221001101687330111000123566764
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
+..++|||+||-|-++. -++--..+|++.|.+.....-+++
T Consensus 112 ~~~~lLDlGAGdGeit~-~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987 112 EPVTLLDLGAGDGEITL-RMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCEEEEECCCCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87068861678861001-214218999998766999999865
No 248
>PRK05246 glutathione synthetase; Provisional
Probab=88.10 E-value=0.043 Score=33.27 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-----HHCCCCCCCCCCC--CHHHHHCC
Q ss_conf 210011016873301110001235667642001332210022344566542-----1003444431015--13431000
Q gi|254780405|r 61 SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG-----KIGNISPFQLVYL--DPPYGQGL 132 (189)
Q Consensus 61 ~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~-----~~~~~~~fDiIf~--DPPY~~~~ 132 (189)
+|-.||.+||- .|..++.+.-.++ .+.-.... ..+++.. +...|. +......||+||+ ||||+..+
T Consensus 23 ~Lm~eAq~rGh-ev~~~~p~dL~~~---~~~v~a~~-~~v~~~~-~~~~~~~~~~~~~~~L~~fD~V~mRkDPPfD~~Y 95 (316)
T PRK05246 23 AMMLEAQRRGH-ELFYYEPDDLSLR---GGEVRARA-RPLTVRD-DKGDWYELGEEQRLPLADFDVILMRKDPPFDMEY 95 (316)
T ss_pred HHHHHHHHCCC-EEEEEECCCEEEE---CCEEEEEE-EEEEECC-CCCCCEEECCCEECCHHHCCEEEECCCCCCCHHH
T ss_conf 99999998799-8999972756998---99999999-9999815-8887479415155130019899992699997688
No 249
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.04 E-value=0.83 Score=25.65 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 58967861100122210011----01687330111000123566764200133221002234456654210034444310
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
..|.+++=+++ |.+|+-+ -.+||++|+.+|.+++.++.+++. +...-+..-..|+.++.+. ...+|++
T Consensus 168 ~~g~~VlV~G~--G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~----Ga~~~i~~~~~~~~~~~~~--~g~~Dvv 239 (343)
T PRK09880 168 LQGKRVFISGV--GPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQM----GADVLVNPQNDDMDHWKAE--KGYFDVS 239 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCEEECCCCCCHHHHHHH--CCCCCEE
T ss_conf 56988999847--76799999999986998799997978999999972----9979987987439999963--6997789
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
|- ..+. ...++... .+++++|.+++
T Consensus 240 ie----~~G~-~~~~~~al--~~~r~gG~iv~ 264 (343)
T PRK09880 240 FE----VSGH-PSSVNTCL--EVTRAKGVMVQ 264 (343)
T ss_pred EE----ECCC-HHHHHHHH--HHCCCCEEEEE
T ss_conf 99----2199-99999999--73779839999
No 250
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.91 E-value=1.5 Score=24.21 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=51.6
Q ss_pred CCCCEEEECCCCCCCCHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 589678611001222100110----1687330111000123566764200133221002234456654210034444310
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEAL----SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEal----SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
..|.++|=+ |.|.+|+-|+ ..||+.|+.+|.+++.++.+++. +...-+..-..+..+.........+|-+
T Consensus 159 ~~g~~vlV~--GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~l----GAd~~i~~~~~~~~~~~~~~~~~~~d~v 232 (347)
T PRK10309 159 CEGKNVIII--GAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCEEEEE--CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCEEECCCCCCHHHHHHHHCCCCCCEE
T ss_conf 889869998--9983899999999985997699992899999999972----9989986887799999998629988869
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
.+|. .+ ....++... .+++++|.+++
T Consensus 233 vid~---~G-~~~~~~~a~--~~~~~~G~iv~ 258 (347)
T PRK10309 233 ILET---AG-VPQTVELAI--EIAGPRAQLAL 258 (347)
T ss_pred EEEC---CC-CHHHHHHHH--HHHCCCEEEEE
T ss_conf 9979---99-989999999--96189749999
No 251
>pfam05711 TylF Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex.
Probab=87.79 E-value=1.5 Score=24.06 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH-CCCCCCCEEEEEEC
Q ss_conf 35667642001332-2100223445665421003444431015134310002888988874-48888974999981
Q gi|254780405|r 83 SIRLIRRNSELLGV-EKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK-EGWLEPNALVIIEE 156 (189)
Q Consensus 83 a~~~lk~N~~~~~~-~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~-~~~L~~~gliiiE~ 156 (189)
..+..++|+.+.++ .++++++.+.+.+-++....+++-+.-+| ...|+.....|.. ..-+.++|++|+--
T Consensus 142 s~e~Vk~Nf~~~~l~dd~V~fikG~f~DTLp~~~~~~Ia~lrlD----~D~YeSt~~~Le~lypkl~~GG~iiiDD 213 (249)
T pfam05711 142 PLETVRENFARYGLLDDQVRFLPGWFKDTLPTAPIERLAVLRLD----GDLYESTMDALTNLYPKLSPGGFVIVDD 213 (249)
T ss_pred CHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCEEEEEEE----CCCHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 89999999997068854517955652320154884527899952----4311889999999734068882899926
No 252
>KOG1541 consensus
Probab=87.32 E-value=0.38 Score=27.70 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7858999999987763336455896786110012221001101687330111000123566764
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
+++.|.-|-+ . .+.. ...-+||++||||--|=+...-| -..+.+|+++..++.+.+
T Consensus 35 em~eRaLELL----a--lp~~-~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541 35 EMAERALELL----A--LPGP-KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred HHHHHHHHHH----H--CCCC-CCCEEEEECCCCCCCHHEECCCC-CEEEEECCCHHHHHHHHH
T ss_conf 7888789876----0--8998-87179983457774320021689-558862289899999997
No 253
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.17 E-value=0.79 Score=25.79 Aligned_cols=96 Identities=24% Similarity=0.265 Sum_probs=51.4
Q ss_pred CCCCCHHH---H-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHH-HHH-HCCCCCCCCCCCC--HHH
Q ss_conf 12221001---1-0168733011100012356676420013322100-223445665-421-0034444310151--343
Q gi|254780405|r 58 GTGSVGFE---A-LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC-NIFFRDVLR-LGK-IGNISPFQLVYLD--PPY 128 (189)
Q Consensus 58 GsG~lgiE---a-lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~-~ii~~D~~~-~~~-~~~~~~fDiIf~D--PPY 128 (189)
|.|-+|+- + .++|. +|+.+|.|++.++.+++..--+- +... +++.....+ .+. ....+..|++|+- -|.
T Consensus 10 GlGYVGL~~a~~lA~~G~-~Vig~D~d~~kv~~l~~g~~p~~-Ep~l~~ll~~~~~~~~l~~t~~~~~ad~iiI~V~TP~ 87 (415)
T PRK11064 10 GLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIV-EPDLDMVVKAAVEGGYLRATTTPVPADAFLIAVPTPF 87 (415)
T ss_pred CCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCCCC-CCCHHHHHHHHHHCCCCEEECCHHHCCEEEEECCCCC
T ss_conf 868778999999996889-48999899999999978689988-9898999999986598365257467899999889997
Q ss_pred HH------CCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 10------002888988874488889749999817
Q gi|254780405|r 129 GQ------GLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 129 ~~------~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
.. ......++.|.. .++++.++++|+.
T Consensus 88 ~~~~~~Dls~i~~a~~~I~~--~l~~~~lVIi~ST 120 (415)
T PRK11064 88 KGDHEPDLSYVEAAAKSIAP--VLKKGDLVILEST 120 (415)
T ss_pred CCCCCCCCCHHHHHHHHHHH--HCCCCCEEEECCC
T ss_conf 89997202018889999997--5268867996378
No 254
>KOG2940 consensus
Probab=86.73 E-value=0.86 Score=25.55 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHH-CCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 8999999987763-336455896786110012221001101687330111000123566764200133221002234456
Q gi|254780405|r 29 SRTKKALFDILTH-VYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 29 ~~vrealFniL~~-~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
+-.+|.+=.-|.. .+...-....++|++||-|++.=-.+-+|..+.+.+|.+...++.++.- +...+ .+..+.+|-
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DE 128 (325)
T KOG2940 52 DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDE 128 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCHHHEEEEECCHHHHHHHHCC-CCCCE--EEEEEECCH
T ss_conf 689999888888999877660752044065544656887752513406640416799975326-89853--799972551
Q ss_pred HHHHHHCCCCCCCCCCCCHHH-HHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 654210034444310151343-10002888988874488889749999
Q gi|254780405|r 108 LRLGKIGNISPFQLVYLDPPY-GQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 108 ~~~~~~~~~~~fDiIf~DPPY-~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
. ++. .....+|+|..---- ..+..+..+-.+. ..|||+|++|.
T Consensus 129 E-~Ld-f~ens~DLiisSlslHW~NdLPg~m~~ck--~~lKPDg~Fia 172 (325)
T KOG2940 129 E-FLD-FKENSVDLIISSLSLHWTNDLPGSMIQCK--LALKPDGLFIA 172 (325)
T ss_pred H-CCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHH--HHCCCCCCCHH
T ss_conf 0-156-55350111265433456404836899988--74289751216
No 255
>PRK12458 glutathione synthetase; Provisional
Probab=86.21 E-value=0.15 Score=30.05 Aligned_cols=15 Identities=20% Similarity=0.753 Sum_probs=12.1
Q ss_pred CCCCCCCCC--CHHHHH
Q ss_conf 444431015--134310
Q gi|254780405|r 116 ISPFQLVYL--DPPYGQ 130 (189)
Q Consensus 116 ~~~fDiIf~--DPPY~~ 130 (189)
...||+||+ ||||+.
T Consensus 83 L~~~D~I~mRkDPPfD~ 99 (349)
T PRK12458 83 LAGFDVLFLRNNPSLDN 99 (349)
T ss_pred HHHCCEEEEECCCCCCC
T ss_conf 65698999948999983
No 256
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.61 E-value=0.26 Score=28.65 Aligned_cols=67 Identities=22% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 67785899999998776333645589678611001-22210011016-873301110001235667642
Q gi|254780405|r 24 IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAG-TGSVGFEALSR-GCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 24 ~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaG-sG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N 90 (189)
-||.++-.|+-+|.-..++....+.+++||=++|| -|+-....|.| |..+.+.+|.|.--...+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~pe~QekL~~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ 70 (209)
T PRK08644 2 ELPPMEELEAMLVSRHTPGVLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ 70 (209)
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCC
T ss_conf 999999999999974699999999629689988878899999999993898189988999015411037
No 257
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.48 E-value=1.6 Score=23.94 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58967861100122210011----01687330111000123566764-20013322100223445665421003444431
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRR-NSELLGVEKNCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~-N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
..+.+++=+ |.|.+|+=| -..||+.|+.+|.++..++.+++ .....-.....+ .+............+|+
T Consensus 167 ~~~~~V~V~--GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~---~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVV--GAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSED---DAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCH---HHHHHHHHHCCCCCCCE
T ss_conf 889989998--8889999999999876982799979998999999987797187246301---47889998608987999
Q ss_pred CCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 015134310002888988874488889749999
Q gi|254780405|r 122 VYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 122 If~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+|- ..+ ....++.... +++++|.+.+
T Consensus 242 vie----~~G-~~~~~~~ai~--~~r~gG~v~~ 267 (350)
T COG1063 242 VIE----AVG-SPPALDQALE--ALRPGGTVVV 267 (350)
T ss_pred EEE----CCC-CHHHHHHHHH--HCCCCCEEEE
T ss_conf 999----989-9799999999--6025989999
No 258
>COG4889 Predicted helicase [General function prediction only]
Probab=85.31 E-value=0.61 Score=26.46 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC--CCCEEEECCCCCCCCH---------HHHHCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 8677858999999987763336455--8967861100122210---------0110168-73301110001235667642
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFL--DSTRMLNIFAGTGSVG---------FEALSRG-CHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~--~~~~vlDlfaGsG~lg---------iEalSrG-A~~v~~vE~~~~a~~~lk~N 90 (189)
.+|-|.+..|.- |+..+ ++-++||-|+|||++= .|+|.|. ++..++.|+---++-++--|
T Consensus 826 Ilra~d~vlkkH--------Fg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiN 897 (1518)
T COG4889 826 ILRATDDVLKKH--------FGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAIN 897 (1518)
T ss_pred HHHHCCHHHHHH--------HCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888511388987--------188866577066347787407899999986588999999985530778799999999862
Q ss_pred HCCC--C------------CCCCHHHHHHHHHH---------HHHHCCCCCCCCCCCCHHHH
Q ss_conf 0013--3------------22100223445665---------42100344443101513431
Q gi|254780405|r 91 SELL--G------------VEKNCNIFFRDVLR---------LGKIGNISPFQLVYLDPPYG 129 (189)
Q Consensus 91 ~~~~--~------------~~~~~~ii~~D~~~---------~~~~~~~~~fDiIf~DPPY~ 129 (189)
++.. + +.+..+....|-.+ -++.....+.-+|.=+|||.
T Consensus 898 Ie~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS 959 (1518)
T COG4889 898 IEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYS 959 (1518)
T ss_pred HHHHHHHHCCCCCCCCCCEECCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 79876541487113787154023544223545565457537899861378549991799876
No 259
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=85.28 E-value=3.1 Score=22.26 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCCCC
Q ss_conf 558967861100122210011----0168733011100012356676420013322100223445665421-00344443
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK-IGNISPFQ 120 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~-~~~~~~fD 120 (189)
.+.|..+|=.+| |.+|+-| -.+||.+|+.+|.+++..+.+++ ++...-+..-..|..+..+ .....-+|
T Consensus 161 ~~~g~~VlV~Ga--G~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~~~~~~~~~~t~~~G~D 234 (341)
T PRK05396 161 DLVGEDVLITGA--GPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCCEEEEECC--CCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHCCCCCE
T ss_conf 778886999899--7543299999998499289999489999998986----4994999688506899999974899976
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 1015134310002888988874488889749999
Q gi|254780405|r 121 LVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 121 iIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+||=--. .....+..++ .++++|.+++
T Consensus 235 vvid~~G-~~~~~~~~~~------~l~~gG~vv~ 261 (341)
T PRK05396 235 VGLEMSG-APSAFRQMLD------AMNHGGRIAM 261 (341)
T ss_pred EEEECCC-CHHHHHHHHH------HHHCCCEEEE
T ss_conf 9998789-8999999999------8635989999
No 260
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=85.20 E-value=2.7 Score=22.63 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHC---CCCCCHHH-HHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 58999999987763336455896786110012221001101---68733011-100012356676420013322100223
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALS---RGCHYVLF-VDNNSESIRLIRRNSELLGVEKNCNIF 103 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalS---rGA~~v~~-vE~~~~a~~~lk~N~~~~~~~~~~~ii 103 (189)
-..+|+.+|+-+.- =+.-+||++.++||-.++|++. .|- |+. ++.+.. ..-+..-++.+.-..+-.++
T Consensus 477 l~~~~~rl~~~~~~-----qr~~~vl~l~~~sll~~~~~l~~~pegg--v~~~~~~~~~-~~rL~aQl~lLdpL~RP~Ll 548 (726)
T PRK13341 477 LRILRDRLWSGITW-----QRHDRVLNLANRSLLWALEPLRAVPEGG--VTVLCESSDD-IVRLEAQLDLLDPLGRPVLL 548 (726)
T ss_pred HHHHHHHHHCCCCC-----CCCCEEEEECCCCHHHHHHHHHHCCCCC--EEEEECCHHH-HHHHHHHHHHCCHHCCCCEE
T ss_conf 99999998433665-----6343599833851265267786189986--6998378889-99999998746811197112
Q ss_pred HHHHHHHHHHCCCCCCCCC-----CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE-EE
Q ss_conf 4456654210034444310-----1513431000288898887448888974999-98
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLV-----YLDPPYGQGLAQQALAIIDKEGWLEPNALVI-IE 155 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiI-----f~DPPY~~~~~~~~l~~l~~~~~L~~~glii-iE 155 (189)
.+++..+.......+||.| +.|=++ ...+...+.|.+ .+.++|.+. ++
T Consensus 549 ~~~~~~l~~L~~~~~FE~IgGR~~~~~l~~--~~~~~~~q~L~~--~l~p~g~l~Ll~ 602 (726)
T PRK13341 549 DAGLLALKYLPANLQFEWIGGRNGLDDLLY--KADEELWQQLTE--KLTPNGGLRLLI 602 (726)
T ss_pred ECCCHHHHHCCCCCCEEEEECCCCCCCCCH--HHHHHHHHHHHH--HCCCCCEEEEEE
T ss_conf 167114653798764247833320023422--569999999998--659986699863
No 261
>PRK10083 putative dehydrogenase; Provisional
Probab=85.18 E-value=1.5 Score=24.19 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCCCEEEECCCCCCCCHH---HHHC--CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 589678611001222100---1101--6873301110001235667642
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGF---EALS--RGCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgi---EalS--rGA~~v~~vE~~~~a~~~lk~N 90 (189)
..|.++|=++| |.+|+ .++. +||+.|+.+|.+++.++.+++.
T Consensus 159 ~~g~~VlV~G~--G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~ 205 (339)
T PRK10083 159 TEQDVALIYGA--GPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKES 205 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC
T ss_conf 99988999587--659999999999856997899937989999999971
No 262
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=84.98 E-value=1.3 Score=24.44 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=54.9
Q ss_pred EEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCCHHH
Q ss_conf 861100122210--0110168733011100012356676420013322100223445665-4210034444310151343
Q gi|254780405|r 52 MLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LGKIGNISPFQLVYLDPPY 128 (189)
Q Consensus 52 vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~-~~~~~~~~~fDiIf~DPPY 128 (189)
++|+.||+|... .+....+ ..++.+|.++.++...+..... .....+.....|... .........||++......
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG-AYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred EEEEECCCCHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCHH
T ss_conf 588603854689999973578-5799936888999999986300-45663576760421355675666657789861234
Q ss_pred HHCCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 10002888988874488889749999817
Q gi|254780405|r 129 GQGLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 129 ~~~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
........+..+.. .++++|.+++...
T Consensus 130 ~~~~~~~~~~~~~~--~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLPPAKALRELLR--VLKPGGRLVLSDL 156 (257)
T ss_pred HHHHHHHHHHHHHH--HCCCCCEEEEEEC
T ss_conf 43028999999998--7078868999962
No 263
>KOG0024 consensus
Probab=83.82 E-value=2.8 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCCCEEEECCCCC-CCCHHHHH-CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5896786110012-22100110-1687330111000123566764
Q gi|254780405|r 47 LDSTRMLNIFAGT-GSVGFEAL-SRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 47 ~~~~~vlDlfaGs-G~lgiEal-SrGA~~v~~vE~~~~a~~~lk~ 89 (189)
-.|.++|=++||. |-+.+-++ --||++|+.+|.++..++.+++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 668868997676899999999987498728996067779999998
No 264
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=83.74 E-value=3.9 Score=21.65 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCCEEEECCCCCC----CCHH---HHHCC--C-CCCHHHHHHHHHHHHHHHHHHCC-----CCCCCCH--HHH-------
Q ss_conf 8967861100122----2100---11016--8-73301110001235667642001-----3322100--223-------
Q gi|254780405|r 48 DSTRMLNIFAGTG----SVGF---EALSR--G-CHYVLFVDNNSESIRLIRRNSEL-----LGVEKNC--NIF------- 103 (189)
Q Consensus 48 ~~~~vlDlfaGsG----~lgi---EalSr--G-A~~v~~vE~~~~a~~~lk~N~~~-----~~~~~~~--~ii------- 103 (189)
+--+|+-..|+|| ||++ |++-. + --++++.|+|..+++.+++=+=. -+++... +.|
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCC
T ss_conf 85399966768995589999999987332258743899997999999998628887667654499899963376469984
Q ss_pred ---HHHHH--------HHHHHC-CCCCCCCCCC-------CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf ---44566--------542100-3444431015-------134310002888988874488889749999817788
Q gi|254780405|r 104 ---FRDVL--------RLGKIG-NISPFQLVYL-------DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 104 ---~~D~~--------~~~~~~-~~~~fDiIf~-------DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
...+. +++... ...+||+||+ |.| .-.+++..+.. .|+++|++++-|+...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~----~q~~il~~f~~--~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE----TQERILRRFAD--SLKPGGLLFLGHSETI 245 (268)
T ss_pred EEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHH----HHHHHHHHHHH--HHCCCCEEEECCCCCC
T ss_conf 7987687624377535788875435898889984148863789----99999999999--7489978998267666
No 265
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=83.49 E-value=1.4 Score=24.28 Aligned_cols=87 Identities=21% Similarity=0.207 Sum_probs=48.0
Q ss_pred CCCCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHHCCHHH
Q ss_conf 12221001-1016873301110001235667642001332210022344566542-100344443101513431000288
Q gi|254780405|r 58 GTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG-KIGNISPFQLVYLDPPYGQGLAQQ 135 (189)
Q Consensus 58 GsG~lgiE-alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~-~~~~~~~fDiIf~DPPY~~~~~~~ 135 (189)
|-|.+.+. |..+||.+|+.+|.+++..+.+++. +.+.-+..-..|..+.+ +......+|+||--.+ ...
T Consensus 1 giG~~~iq~ak~~Ga~~Vi~~~~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g-----~~~ 71 (131)
T pfam00107 1 GVGLAAVQLAKALGAARVIAVDRSEEKLELAKEL----GADHVINYRDEDFVERVRELTGGRGVDVVIDCVG-----APA 71 (131)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCC-----CHH
T ss_conf 9589999999984998799996988999999975----9973235332212455654049977649886688-----666
Q ss_pred HHHHHHHCCCCCCCEEEEEE
Q ss_conf 89888744888897499998
Q gi|254780405|r 136 ALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 136 ~l~~l~~~~~L~~~gliiiE 155 (189)
.++... ..++++|.+++-
T Consensus 72 ~~~~~~--~~~~~~G~iv~~ 89 (131)
T pfam00107 72 TLEQAL--ELLRPGGRVVVV 89 (131)
T ss_pred HHHHHH--HHHCCCCEEEEE
T ss_conf 799998--753599789999
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.28 E-value=0.67 Score=26.20 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 67785899999998776333645589678611001222100110168--7330111000123566764200133221002
Q gi|254780405|r 24 IRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG--CHYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 24 ~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG--A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
.+..+=.+.|++= .|.. ..+..++|.=-|-|.-+=.-|+++ ..+++++|.|+.|++.+++-+...+ +++.
T Consensus 5 ~~HipVLl~E~i~-~L~~-----~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~ 76 (314)
T COG0275 5 FRHIPVLLNEVVE-LLAP-----KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVT 76 (314)
T ss_pred CCCCCHHHHHHHH-HCCC-----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC--CCEE
T ss_conf 7762117999998-5264-----899479982377747689999858988708997689899999999853037--8489
Q ss_pred HHHHHHHH---HHHHCCCCCCCCCCCC
Q ss_conf 23445665---4210034444310151
Q gi|254780405|r 102 IFFRDVLR---LGKIGNISPFQLVYLD 125 (189)
Q Consensus 102 ii~~D~~~---~~~~~~~~~fDiIf~D 125 (189)
++++...+ .++.....++|=|.+|
T Consensus 77 ~v~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 77 LVHGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred EEECCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 995768789988876388722279995
No 267
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.11 E-value=0.45 Score=27.26 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+++|+.+|=-++++|. ++.+.+.+|| +|+..+.+.+.++-..+.++..+. ++..+.+|+.+
T Consensus 6 f~l~gK~alVTG~s~GIG~aiA~~la~~Ga-~Vii~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~ 70 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAEAGA-TIVFNDIKQELVDKGLAAYRELGI--EAHGYVCDVTD 70 (265)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCC
T ss_conf 198999899958576899999999998699-999995998999999999995499--17999932899
No 268
>PRK06194 hypothetical protein; Provisional
Probab=82.68 E-value=0.48 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=43.0
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
+++|+.++=-+|++|. ++...+++|| +|+.+|.+.+.++-+.+.++..+. ++..+.+|+.+
T Consensus 3 ~l~gKvavITGassGIG~a~A~~la~~Ga-~Vvl~d~~~~~l~~~~~~l~~~g~--~v~~~~~DVsd 66 (301)
T PRK06194 3 DFAGKVAVITGAASGFGREFARIGARLGM-KLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSD 66 (301)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
T ss_conf 98999899927377999999999998799-899997988999999999984598--49999656899
No 269
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.58 E-value=1.8 Score=23.69 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=50.4
Q ss_pred CCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf 896786110012221001----10168733011100012356676420013322100223445665421-0034444310
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK-IGNISPFQLV 122 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~-~~~~~~fDiI 122 (189)
.|.+||=.+| |.+|+- |..+||.+|+.+|.+++.++.+++. +...-+..-..|..+..+ .....-+|+|
T Consensus 176 ~g~~VlV~Ga--G~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~l----Ga~~~i~~~~~~~~~~v~~~t~g~G~Dvv 249 (358)
T TIGR03451 176 RGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCEEEECCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 9988999673--76999999999983991899991988999999965----99099739987889999998589887499
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
| |. .+. ...++... ..++++|.+++
T Consensus 250 i-e~---~G~-~~~~~~al--~~~~~gG~iv~ 274 (358)
T TIGR03451 250 I-DA---VGR-PETYKQAF--YARDLAGTVVL 274 (358)
T ss_pred E-EC---CCC-HHHHHHHH--HHHCCCCEEEE
T ss_conf 9-99---999-89999999--97627969999
No 270
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.44 E-value=0.5 Score=26.96 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++...+++|| +|+.++.+.+.++-+.+-++..+. ++..+.+|+.
T Consensus 2 ~L~gK~~lITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dv~ 64 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAQCAALGG--EAEVYAANVT 64 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 78998899948877899999999998799-899997999999999999996599--4899982479
No 271
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.09 E-value=0.53 Score=26.81 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=38.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5589678611001222---10011016873301110001235667642001332
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGV 96 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~ 96 (189)
+++|+.+|=-+||+|. ++...++.|| +|+.++.+++.++-+.+.+...+.
T Consensus 2 dlk~Kv~lITGas~GIG~aiA~~~A~~Ga-~Vii~~r~~~~l~~~~~~i~~~g~ 54 (227)
T PRK08862 2 DIKNSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALNDTYEQCSALTD 54 (227)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 99999999979887999999999998799-999996999999999999997589
No 272
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.99 E-value=1.8 Score=23.59 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCC
Q ss_conf 5896786110012221001----10168733011100012356676420013322100223445665-421003444431
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LGKIGNISPFQL 121 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~-~~~~~~~~~fDi 121 (189)
..+.+++=+++ |.+|+- |..+||.+|+.+|.+....+.+++- +...- +-..+..+ .........+|+
T Consensus 119 ~~g~~V~V~G~--G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~----Ga~~~--i~~~~~~~~~~~~~~g~g~D~ 190 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATAL--AEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEEEC--CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC----CCCEE--ECCCCHHHHHHHHHCCCCCCE
T ss_conf 99998999907--86899999999984998799991998999999973----99898--377577999999727888709
Q ss_pred CCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 0151343100028889888744888897499998
Q gi|254780405|r 122 VYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 122 If~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+|- ..+ ....++... .+++++|.+++-
T Consensus 191 vie----~~G-~~~~~~~a~--~~l~~gG~iv~v 217 (280)
T TIGR03366 191 ALE----FSG-ATAAVRACL--ESLDVGGTAVLA 217 (280)
T ss_pred EEE----CCC-CHHHHHHHH--HHHHCCCEEEEE
T ss_conf 998----789-889999999--986049899998
No 273
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=81.91 E-value=4.6 Score=21.22 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCEEEECCCCCC----CCHH---HHHC--CCCCCHHHHHHHHHHHHHHHHHHCC---C-CCCC--CHHH----------
Q ss_conf 8967861100122----2100---1101--6873301110001235667642001---3-3221--0022----------
Q gi|254780405|r 48 DSTRMLNIFAGTG----SVGF---EALS--RGCHYVLFVDNNSESIRLIRRNSEL---L-GVEK--NCNI---------- 102 (189)
Q Consensus 48 ~~~~vlDlfaGsG----~lgi---EalS--rGA~~v~~vE~~~~a~~~lk~N~~~---~-~~~~--~~~i---------- 102 (189)
..-+++-..|-|| ++++ |++. -+--++++.|+|..+++.+++-+=. + ++.. .-+.
T Consensus 115 ~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCC
T ss_conf 97589976778872399999999997323777707999979888999998089888998459999995116415787666
Q ss_pred ---HHHHHHH--------HHH--HCCCCCCCCCCCCH--HH-HHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf ---3445665--------421--00344443101513--43-10002888988874488889749999817788867578
Q gi|254780405|r 103 ---FFRDVLR--------LGK--IGNISPFQLVYLDP--PY-GQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGA 166 (189)
Q Consensus 103 ---i~~D~~~--------~~~--~~~~~~fDiIf~DP--PY-~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~ 166 (189)
+..++.+ ++. .....+||+||+== =| +...-.++++.+.. .|+|+|.+++-|+.... ....
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~--~L~pgG~L~lG~sEsl~-~~~~ 271 (287)
T PRK10611 195 LVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVP--LLKPDGLLFAGHSENFS-QLSR 271 (287)
T ss_pred EEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH--HHCCCCEEEEECCCCCC-CCCC
T ss_conf 18745787630777140067998888899519997840536789999999999999--86899289983887778-8771
Q ss_pred CCEE
Q ss_conf 8579
Q gi|254780405|r 167 AFHF 170 (189)
Q Consensus 167 ~~~~ 170 (189)
.|+.
T Consensus 272 ~F~~ 275 (287)
T PRK10611 272 EFYL 275 (287)
T ss_pred CCEE
T ss_conf 6276
No 274
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=81.40 E-value=1.8 Score=23.65 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=51.6
Q ss_pred CCCCCCHHH---H-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HH--H-H-CCCCCCCCCCCC--
Q ss_conf 012221001---1-0168733011100012356676420013322100223445665-42--1-0-034444310151--
Q gi|254780405|r 57 AGTGSVGFE---A-LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LG--K-I-GNISPFQLVYLD-- 125 (189)
Q Consensus 57 aGsG~lgiE---a-lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~-~~--~-~-~~~~~fDiIf~D-- 125 (189)
-|.|-+|+- + .+.|. +|+.+|.|++.++.+++..-.+.-.+--+++...... +. . . ......|+||+-
T Consensus 6 iGlGyVGl~~a~~la~~G~-~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~i~I~Vp 84 (185)
T pfam03721 6 IGLGYVGLPTAVCLAEIGH-DVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADVIFIAVP 84 (185)
T ss_pred ECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEECC
T ss_conf 8978748999999994899-399997998999998626897467588999987340896998787998844989999736
Q ss_pred HHHHH------CCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 34310------002888988874488889749999817
Q gi|254780405|r 126 PPYGQ------GLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 126 PPY~~------~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
=|... ......+..|.+ .++++.++++|+.
T Consensus 85 TP~~~~~~~d~s~l~~~~~~i~~--~l~~~~liii~ST 120 (185)
T pfam03721 85 TPSKKGGAPDLTYVESAARTIGP--VLKKGKVVVVKST 120 (185)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECC
T ss_conf 87655767663599999999974--4679989999189
No 275
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=81.09 E-value=1.4 Score=24.36 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH--HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 8589999999877633364558967861100122210011--01687330111000123566764200133221002234
Q gi|254780405|r 27 SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEA--LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF 104 (189)
Q Consensus 27 t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEa--lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~ 104 (189)
..+..=..+|..+. .-.+|+||.||---+++.- ++-++ ..++.|+|...++.+..-+..++.+.++ ..
T Consensus 88 ~ld~fY~~if~~~~-------~p~sVlDlaCGlNPLa~pwm~~~~~~-~Y~a~DId~~~i~fi~~~l~~l~v~~~~--~~ 157 (248)
T pfam07091 88 ILDEFYAEIFGALP-------PPRSVLDLACGLNPLAVPWMPLAPDA-TYHAYDIDRALIEFIRAFLALLGVPGEV--RV 157 (248)
T ss_pred HHHHHHHHHHHCCC-------CCCEEEEECCCCCCCCCCCCCCCCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCE--EE
T ss_conf 58999999983489-------98644200026883014233689986-7999707778999999999862987637--98
Q ss_pred HHHHHHHHHCCCCCCCCCCC
Q ss_conf 45665421003444431015
Q gi|254780405|r 105 RDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 105 ~D~~~~~~~~~~~~fDiIf~ 124 (189)
.|+.. .....+.|+-++
T Consensus 158 ~Dl~~---~~p~~~~DvaLl 174 (248)
T pfam07091 158 RDLLT---DPPAEPADVALL 174 (248)
T ss_pred EEECC---CCCCCCCCCHHH
T ss_conf 76104---799887340047
No 276
>KOG2356 consensus
Probab=80.78 E-value=0.75 Score=25.90 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCH
Q ss_conf 96786110012221001101687330111000123566764200133221002234456654210--0344443101513
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKI--GNISPFQLVYLDP 126 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~DP 126 (189)
+..+.+++-|-+.=+.++. | .++.-+|-+... ..=+..+..++.+|+.+..+. .....+|+|.+||
T Consensus 125 ~~~~~~m~n~~~~n~~~~s--~-qk~~~~dGs~g~---------kYyIPpkSsF~~gDv~~~~qll~~H~llpdlIIiDP 192 (366)
T KOG2356 125 ESLSNLMSNGMINNWVRCS--G-QKPGIIDGSDGT---------KYYIPPKSSFHVGDVKDIEQLLRAHDLLPDLIIIDP 192 (366)
T ss_pred CCHHHHHHHHHHHHHHCCC--C-CCEEEEECCCCC---------EEEECCCCCEECCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 1028888767543132034--3-312686078761---------687278550211537778887577763687699679
Q ss_pred HHHHC---------CHHHHHH--HHHHCCCCCCCEEEEEECCCCC--------------CCCCCCCCEEEEEEECCCE
Q ss_conf 43100---------0288898--8874488889749999817788--------------8675788579998341856
Q gi|254780405|r 127 PYGQG---------LAQQALA--IIDKEGWLEPNALVIIEEYAGT--------------CISVGAAFHFLQERKYGDT 179 (189)
Q Consensus 127 PY~~~---------~~~~~l~--~l~~~~~L~~~gliiiE~~~~~--------------~~~~~~~~~~~~~k~yG~t 179 (189)
|+... ....++. .|--..+..+.|++.+=+.-++ .+.....|..++--..|.-
T Consensus 193 PW~NKSVkRs~~Ysmlsnl~ql~~IPI~kl~~p~~lvA~WcTNrqkhi~f~k~eLf~kWnl~lv~tw~wlKitt~gep 270 (366)
T KOG2356 193 PWFNKSVKRSRTYSMLSNLLQLLDIPIIKLHDPLCLVAFWCTNRQKHIEFEKIELFDKWNLELVATWKWLKITTQGEP 270 (366)
T ss_pred CCCCCCCCCCCCEECCCCHHHHHCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
T ss_conf 987743241224000252466640870443387705999971818889999999887626542778889996157871
No 277
>PRK05855 short chain dehydrogenase; Validated
Probab=80.35 E-value=0.64 Score=26.30 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=44.7
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 45589678611001222---1001101687330111000123566764200133221002234456
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
..++|+.+|=-+||||. ++++...+|| +|+..|.|.++++-+.+-++..+. .+..+..|+
T Consensus 311 ~rFsGKvAvVTGA~sGIGrA~A~~fA~~GA-~Vvl~Dr~~~~l~eta~ei~~~G~--~a~~~~~DV 373 (582)
T PRK05855 311 GRFGGKLVVVTGAGSGIGRATALAFAREGA-EVVASDIDEAAAERTAALIRAAGA--VAHAYRVDV 373 (582)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCC--EEEEEECCC
T ss_conf 874995899958757899999999997799-999960799999999999995198--489997558
No 278
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.30 E-value=0.69 Score=26.12 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-----HH-HHHHC
Q ss_conf 364558967861100122210011016873--30111000123566764200133221002234456-----65-42100
Q gi|254780405|r 43 YPVFLDSTRMLNIFAGTGSVGFEALSRGCH--YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV-----LR-LGKIG 114 (189)
Q Consensus 43 ~~~~~~~~~vlDlfaGsG~lgiEalSrGA~--~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~-----~~-~~~~~ 114 (189)
+...-.+..|+||+|--|+-+=.|..+... .|++||.++-..- .++..+++|. ++ +....
T Consensus 40 ~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~~------------~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 40 FKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------------PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC------------CCCEEEEEECCCCCHHHHHHHHC
T ss_conf 373058987998387998499999997388884899977545567------------89468841324843799999870
Q ss_pred CCCCCCCCCCCH-HHHH-----------CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 344443101513-4310-----------0028889888744888897499998
Q gi|254780405|r 115 NISPFQLVYLDP-PYGQ-----------GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 115 ~~~~fDiIf~DP-PY~~-----------~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
...++|+|..|+ |=-. .+....++. ....|+++|.+++-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~--a~~vL~~~G~fv~K 158 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF--ALEVLKPGGSFVAK 158 (205)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHEECCCCEEEEE
T ss_conf 7787666872588776787220088999999999999--98725789839999
No 279
>PRK06196 oxidoreductase; Provisional
Probab=80.13 E-value=1.1 Score=24.94 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 88886778589999999877633364558967861100122210011----01687330111000123566764200
Q gi|254780405|r 20 QNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 20 ~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.+.+.++|.+-|-+. .+++|+.++=-+|-+| +|.|+ +++|| +|+..-.|.+..+-+.+-++
T Consensus 7 ~~f~~~sta~~v~~~----------~dL~GK~~vITGa~sG-IG~~tA~~La~~Ga-~Vil~~R~~~k~~~a~~~i~ 71 (316)
T PRK06196 7 SGFGAASTASDVLAG----------LDLSGKTAIVTGGYSG-LGLETTRALAQAGA-HVVVPARRPDAAREALAGID 71 (316)
T ss_pred CCCCCCCCHHHHHCC----------CCCCCCEEEECCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC
T ss_conf 998998989999528----------7999998999179967-99999999997899-89999499999999998741
No 280
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.06 E-value=0.64 Score=26.31 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++.+.+-++..+. ++..+.+|+.
T Consensus 3 sL~gKvalITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dvt 65 (238)
T PRK07666 3 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARSEENLKAVAKEVEAEGV--KAVIATADVS 65 (238)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECC
T ss_conf 99999899916377899999999998799-899998999999999999995599--2799993079
No 281
>KOG3350 consensus
Probab=80.06 E-value=1.2 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.7
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 44431015134310
Q gi|254780405|r 117 SPFQLVYLDPPYGQ 130 (189)
Q Consensus 117 ~~fDiIf~DPPY~~ 130 (189)
.+||+|.+||||-.
T Consensus 134 ~~fdiivaDPPfL~ 147 (217)
T KOG3350 134 AHFDIIVADPPFLS 147 (217)
T ss_pred HCCCEEEECCCCCC
T ss_conf 40168971786546
No 282
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.34 E-value=0.84 Score=25.63 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=50.9
Q ss_pred CCCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH------HH--
Q ss_conf 558967861100122210011----016873301110001235667642001332210022344566542------10--
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG------KI-- 113 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~------~~-- 113 (189)
+++|+.++=-+|-|| +|+|+ +++|| +|+..-.|.+..+.+.+.++......+++++..|...+- +.
T Consensus 11 dL~GK~~vITGa~sG-IG~~~a~~La~~Ga-~Vil~~R~~~k~~~a~~~i~~~~~~~~v~~~~lDLs~l~sVr~~a~~~~ 88 (314)
T PRK05854 11 DLSGKLAVVTGASSG-LGFGLARRLAAAGA-DVILPVRNRAKGEAAVAAIRTAVPDAKLTIRALDLSSLASVAALGEQLL 88 (314)
T ss_pred CCCCCEEEECCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999998999068829-99999999997849-8999979999999999999986899856999646316899999999875
Q ss_pred CCCCCCCCCC-----CCHHH
Q ss_conf 0344443101-----51343
Q gi|254780405|r 114 GNISPFQLVY-----LDPPY 128 (189)
Q Consensus 114 ~~~~~fDiIf-----~DPPY 128 (189)
....+.|++. +.||+
T Consensus 89 ~~~~~lDiLInNAGv~~~~~ 108 (314)
T PRK05854 89 AEGRPIHLLINNAGVMTPPE 108 (314)
T ss_pred HCCCCCCEEEECCCCCCCCC
T ss_conf 30687527872676665886
No 283
>KOG2098 consensus
Probab=79.30 E-value=0.6 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH--C-----CHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 00223445665421003444431015134310--0-----02888988874488889749999
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ--G-----LAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~--~-----~~~~~l~~l~~~~~L~~~gliii 154 (189)
..+.|++|+..+ ...-..+|-+|.+||||+- + ..+.-+..| .-..|..+|+|.+
T Consensus 371 p~QWI~CDiR~~-dm~iLGkFaVVmADPpWdIHMeLPYGTm~DdEmr~L-~vp~LQddGlIFL 431 (591)
T KOG2098 371 PPQWICCDIRYL-DMSILGKFAVVMADPPWDIHMELPYGTMTDDEMRRL-NVPVLQDDGLIFL 431 (591)
T ss_pred CCCEEEEECEEE-EEEEECEEEEEEECCCCCCEEECCCCCCCHHHHHCC-CCCCCCCCCEEEE
T ss_conf 861377303142-014321057996079741002267666565776338-9851135867999
No 284
>KOG1596 consensus
Probab=78.98 E-value=1.6 Score=23.91 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 778589999999877633364558967861100122210011016--87-330111000123566764200133221002
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
-|--+++-.+|.-=+.+.+ .--|+.||=|.|+||. +.--.|- |- --|++||.++.+=+.|-.-+++ -.|+-
T Consensus 135 nPfrSKLAA~I~gGvdnih--ikpGsKVLYLGAasGt-tVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNii 208 (317)
T KOG1596 135 NPFRSKLAAGILGGVDNIH--IKPGSKVLYLGAASGT-TVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNII 208 (317)
T ss_pred CHHHHHHHHHHHCCCCCEE--ECCCCEEEEEECCCCC-EEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHC---CCCCE
T ss_conf 7678778887644700125--3588669996336784-3330000307774399998435532889987642---68700
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 234456654210-034444310151343100028889888744888897499998
Q gi|254780405|r 102 IFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 102 ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
-|-.||..--+. ....-.|+||+|-|-.++ .. +-.|....+|+++|-+++.
T Consensus 209 PIiEDArhP~KYRmlVgmVDvIFaDvaqpdq--~R-ivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596 209 PIIEDARHPAKYRMLVGMVDVIFADVAQPDQ--AR-IVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEECCCCCHHEEEEEEEEEEEECCCCCCHH--HH-HHHHHHHHHHCCCCEEEEE
T ss_conf 2450477850035661057789626897034--45-4533466650268718999
No 285
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.40 E-value=0.81 Score=25.71 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--C
Q ss_conf 5589678611001222---100110168733011100012356676420013322100223445665------4210--0
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI--G 114 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~--~ 114 (189)
+++|+.++=-+++||. ++.+.+.+|| +|+..|.|...++-..+.+...+. ++..+.+|+.+ +.+. .
T Consensus 3 ~~~gKvavITGaasGIG~a~A~~la~~Ga-~Vvi~d~~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~l~~~~~~ 79 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98998799928266999999999998799-899997988999999999982698--479997888999999999999999
Q ss_pred CCCCCCCCCCCH
Q ss_conf 344443101513
Q gi|254780405|r 115 NISPFQLVYLDP 126 (189)
Q Consensus 115 ~~~~fDiIf~DP 126 (189)
...+.|+++.+.
T Consensus 80 ~~G~iDilvnNA 91 (275)
T PRK05876 80 LLGHVDVVFSNA 91 (275)
T ss_pred HHCCCCEEECCC
T ss_conf 848988512157
No 286
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.38 E-value=2.1 Score=23.28 Aligned_cols=92 Identities=20% Similarity=0.182 Sum_probs=49.4
Q ss_pred CCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH
Q ss_conf 012221001---10168733011100012356676420013322100223445665421003444431015134310002
Q gi|254780405|r 57 AGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLA 133 (189)
Q Consensus 57 aGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~ 133 (189)
-|.|++|-- .|++.-..|+++...++..+.+++|=-.+.-..........+..- .....+||+||+--. ....
T Consensus 6 iGaGaiG~~~a~~L~~ag~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~--~~~~~~~D~iiv~vK--s~~~ 81 (307)
T PRK06522 6 LGAGAIGGLFGARLAQAGHDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADD--PAELGPQDLVILAVK--AYQL 81 (307)
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCC--HHHCCCCCEEEEECC--CCCH
T ss_conf 991499999999998489988999788889999996893995289769805503488--667489888999806--6689
Q ss_pred HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 888988874488889749999
Q gi|254780405|r 134 QQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 134 ~~~l~~l~~~~~L~~~gliii 154 (189)
...++.+.. ++.+++.|+.
T Consensus 82 ~~a~~~l~~--~l~~~t~iv~ 100 (307)
T PRK06522 82 PAALPDLAP--LLGPETVVLF 100 (307)
T ss_pred HHHHHHHHH--HCCCCCEEEE
T ss_conf 999999986--4599948999
No 287
>PRK06914 short chain dehydrogenase; Provisional
Probab=78.07 E-value=0.78 Score=25.83 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------HH-HCCC
Q ss_conf 589678611001222---1001101687330111000123566764200133221002234456654------21-0034
Q gi|254780405|r 47 LDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL------GK-IGNI 116 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~------~~-~~~~ 116 (189)
++++.+|=-+|+||. ++.+.+.+|+ +|+....+.+..+.+.+.+...+...++.++..|+.+. .+ ....
T Consensus 1 l~~K~alITGassGIG~a~A~~la~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 79 (280)
T PRK06914 1 MNKKIAIITGASSGFGLLTTLELAKKDY-LVIATMRNLEKQENLISQAAQLNLSQNIKVQQLDVTDQNSIHNFQLFLKEY 79 (280)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9519899907344999999999998799-899998988999999999996499976699968899999999999999982
Q ss_pred CCCCCCCCCH
Q ss_conf 4443101513
Q gi|254780405|r 117 SPFQLVYLDP 126 (189)
Q Consensus 117 ~~fDiIf~DP 126 (189)
.+.|+++-+.
T Consensus 80 g~iDvLVNNA 89 (280)
T PRK06914 80 GRIDLLVNNA 89 (280)
T ss_pred CCCCEEEECC
T ss_conf 9987899788
No 288
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.06 E-value=0.84 Score=25.62 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++...+..|| +|+.++.+.+.++.+.+.++..+. ++..+.+|+.
T Consensus 9 ~L~gKvalVTG~s~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~ 71 (259)
T PRK08213 9 DLTGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI--DALWLAADVA 71 (259)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 99999899948776899999999998699-999997988999999999995499--5899982689
No 289
>KOG3115 consensus
Probab=77.84 E-value=4.3 Score=21.42 Aligned_cols=103 Identities=12% Similarity=0.174 Sum_probs=56.6
Q ss_pred CCEEEECCCCCCCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHH----CCC
Q ss_conf 967861100122210011016--87330111000123566764200133------221002234456654210----034
Q gi|254780405|r 49 STRMLNIFAGTGSVGFEALSR--GCHYVLFVDNNSESIRLIRRNSELLG------VEKNCNIFFRDVLRLGKI----GNI 116 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiEalSr--GA~~v~~vE~~~~a~~~lk~N~~~~~------~~~~~~ii~~D~~~~~~~----~~~ 116 (189)
.-.|.|++||-|.+-++. |- --..+...|+--+..+..+.-++.++ .-.++.+...++++++.. ...
T Consensus 61 kvefaDIGCGyGGLlv~L-sp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115 61 KVEFADIGCGYGGLLMKL-APKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred CCEEEEECCCCCCHHHHC-CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCC
T ss_conf 642786046765010120-5468630122001268888999999999752654334565303421202205103431233
Q ss_pred CCCCCCCCCHHHHHCCHH------HHHHHHHHCCCCCCCEEEEE
Q ss_conf 444310151343100028------88988874488889749999
Q gi|254780405|r 117 SPFQLVYLDPPYGQGLAQ------QALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 117 ~~fDiIf~DPPY~~~~~~------~~l~~l~~~~~L~~~gliii 154 (189)
.+-=+.|=||-|...... .++... .-+|+++|.++.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~ey--ay~l~~gg~~yt 181 (249)
T KOG3115 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEY--AYVLREGGILYT 181 (249)
T ss_pred CCCEEECCCHHHHHHHCCCEEECHHHHHHH--HHHHHCCCEEEE
T ss_conf 444032588057665212101203479877--742213844899
No 290
>PRK06720 hypothetical protein; Provisional
Probab=77.80 E-value=1 Score=25.11 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 645589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
..+++|+.++=-+|++|. ++......|| +|+..|.|.+..+.+.+-++..+. ++..+.+|+.
T Consensus 11 ~~~L~gKvalITGa~~GIG~a~A~~la~~Ga-~Vvi~d~~~~~~~~~~~~i~~~g~--~a~~~~~Dvs 75 (169)
T PRK06720 11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGG--EALFVSYDME 75 (169)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 6862999999989754899999999998699-899952763659999999997499--5378975889
No 291
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.25 E-value=0.94 Score=25.33 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=43.8
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+++|+.+|=-++++|. ++.+.+..|| +|+..+.+.+.++-+.+.++..+. ++.++.+|+.+
T Consensus 6 ~~L~gKvalITGgs~GIG~aia~~la~~Ga-~V~i~~~~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~ 70 (263)
T PRK07814 6 FRLDGQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAH 70 (263)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
T ss_conf 089999899958966899999999998799-899996989999999999985299--28999815899
No 292
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.20 E-value=0.81 Score=25.72 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++-+.+.++..+. ++..+.+|+.
T Consensus 3 ~L~gKvvlITGASsGIG~aiA~~~A~~Ga-~Vvl~~R~~~~L~~~a~e~~~~G~--~~~~v~~DVs 65 (324)
T PRK06139 3 PLHGAVVVITGASSGIGRATAEAFARRGA-RLVLAARDEEALFEVAEECRALGA--EVLVVPTDVT 65 (324)
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 85997799938254999999999998799-899998999999999999995499--4899976678
No 293
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=77.05 E-value=1.1 Score=24.94 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHCCCCCCCCCCCCHHHHH
Q ss_conf 0012221001---10168733011100012356676420013322100223445665--421003444431015134310
Q gi|254780405|r 56 FAGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR--LGKIGNISPFQLVYLDPPYGQ 130 (189)
Q Consensus 56 faGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~--~~~~~~~~~fDiIf~DPPY~~ 130 (189)
=||.|.+|-. .|++.- .|+.||.|++.++.+++. ..+++.+|+.+ .++....+..|.+.+.=|
T Consensus 3 I~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~--------~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~--- 70 (115)
T pfam02254 3 IIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREE--------GVPVVVGDATDEEVLEEAGIEDADAVVAATG--- 70 (115)
T ss_pred EECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHC--------CCEEEEEECCCHHHHHHHCCCCCCEEEEECC---
T ss_conf 9878889999999998089-999999987998778866--------9869999568866787619202879999629---
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 0028889888744888897499998
Q gi|254780405|r 131 GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 131 ~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
..+..+......+-+.+...++..
T Consensus 71 -~d~~n~~~~~~~r~~~~~~~iiar 94 (115)
T pfam02254 71 -DDEANILIVLLARELNPAKKIIAR 94 (115)
T ss_pred -CHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -849999999999997899809999
No 294
>PRK07677 short chain dehydrogenase; Provisional
Probab=76.80 E-value=0.91 Score=25.41 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=46.6
Q ss_pred CCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--C
Q ss_conf 589678611001222100----110168733011100012356676420013322100223445665------4210--0
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI--G 114 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~--~ 114 (189)
++|+.+|=-++++| +|. +.+..|| +|+.++.+.+.++.+.+.++..+ .++..+.+|+.+ +.+. .
T Consensus 1 L~gK~alVTGgs~G-IG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~v~~~~~ 76 (254)
T PRK07677 1 MKEKVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPDDVQKMIEQIDE 76 (254)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 95298999587678-99999999998799-99999699999999999998569--9099998038999999999999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 34444310151
Q gi|254780405|r 115 NISPFQLVYLD 125 (189)
Q Consensus 115 ~~~~fDiIf~D 125 (189)
...+.|+++-+
T Consensus 77 ~~g~iDiLVnN 87 (254)
T PRK07677 77 KFGRIDALINN 87 (254)
T ss_pred HHCCCCEEEEC
T ss_conf 83998889975
No 295
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.64 E-value=0.91 Score=25.42 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=41.0
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222100----110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
+++|+.+|=.++++| +|. +.+.+|| +|+.++.+.+..+-+.+.++..+ .++..+.+|+.+
T Consensus 3 ~L~gK~alITGgs~G-IG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dl~~ 66 (253)
T PRK12826 3 DLMGRVALVTGAARG-IGRAIAVRFAADGA-DVIVVDICGQAAAATAELVAAAG--GKARAYQVDVRD 66 (253)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHC--CCEEEEEEECCC
T ss_conf 889988999489778-99999999998799-89999898899999999998509--958999951799
No 296
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.27 E-value=1.1 Score=25.03 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=41.1
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+++|=-++++|. ++...++.|| +|+.++.+++.++-+++.++..+ ++..+.+|+.
T Consensus 2 ~l~gK~~lVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~Dvs 63 (238)
T PRK05786 2 RLKGKNVLIVGVSPGLGYAVAYFALREGA-SVYAFARSEEKLKEIKKTLAKYG---NVIYVVGDVS 63 (238)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCC---CEEEEECCCC
T ss_conf 87998899928987899999999998799-99999698899999999874359---7799975789
No 297
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.24 E-value=1 Score=25.12 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=41.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+++|=-++++|. ++...+..|| +|+..+.+.+.++.+.+-++..+ .++..+.+|+.
T Consensus 6 ~L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~ei~~~g--~~~~~~~~Dvt 68 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVS 68 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 88999899979565999999999998699-99999798899999999998459--91999983699
No 298
>PRK06197 short chain dehydrogenase; Provisional
Probab=75.94 E-value=1.3 Score=24.47 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------HHH--
Q ss_conf 558967861100122210011----01687330111000123566764200133221002234456654------210--
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL------GKI-- 113 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~------~~~-- 113 (189)
++.|+.++=-+|-+| +|+|+ +.+|| +|+..-.|.+..+.+.+-++......+++++..|...+ .+.
T Consensus 13 DL~GK~~lITGa~sG-IG~~~A~~La~~ga-~Vil~~R~~~k~~~a~~~i~~~~~~~~i~~~~lDLssl~sV~~~a~~~~ 90 (306)
T PRK06197 13 DQSGRVAVVTGANTG-LGYETAAALAAKGA-HVVLAVRNLDKGNAAAARITAAHPGADVTLQELDLASLASVRAAADALR 90 (306)
T ss_pred CCCCCEEEECCCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 989999999168959-99999999997849-8999979899999999999976899857999766430778999999999
Q ss_pred CCCCCCCCCCC-----CHHHH
Q ss_conf 03444431015-----13431
Q gi|254780405|r 114 GNISPFQLVYL-----DPPYG 129 (189)
Q Consensus 114 ~~~~~fDiIf~-----DPPY~ 129 (189)
....+.|++.. -|||.
T Consensus 91 ~~~~~lDvLinNAGi~~~~~~ 111 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQ 111 (306)
T ss_pred HCCCCCCEEEECCCCCCCCCC
T ss_conf 618987689977844568872
No 299
>PRK06949 short chain dehydrogenase; Provisional
Probab=75.59 E-value=1.1 Score=25.00 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+++|+.+|=-++++|. ++...+..|| +|++.+.+.+.++-+...++..+. ++.++.+|+.+
T Consensus 5 ~~L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~~ 69 (258)
T PRK06949 5 INLEGKVALVTGASSGLGQRFAQVLSQAGA-KVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTD 69 (258)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 878999899958577999999999998799-999996988999999999996599--28999826899
No 300
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.50 E-value=1.1 Score=24.84 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=41.9
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 455896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++| +|.+ .+..|| +|+.++.+.+.++-+.+.++..+. ++..+.+|+.
T Consensus 6 f~L~gKvalVTGas~G-IG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dvt 69 (278)
T PRK08277 6 FSLKGKVAVITGGGGV-LGGAMAKELARAGA-KVAILDRNQEKAEAVVEEIKANGG--EAIALKADVL 69 (278)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 3889998999586748-99999999998799-899997988999999999984599--0999982489
No 301
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.12 E-value=2.4 Score=22.90 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=50.8
Q ss_pred CCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH----HHHH-HHCCCCCCCCC-CCCH-
Q ss_conf 12221001----101687330111000123566764200133221002234456----6542-10034444310-1513-
Q gi|254780405|r 58 GTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV----LRLG-KIGNISPFQLV-YLDP- 126 (189)
Q Consensus 58 GsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~----~~~~-~~~~~~~fDiI-f~DP- 126 (189)
|-|-+||. ..++|+ +|+.+|+|++.++.+.+--....-.+.-+++..-+ ++.. .....+..|++ .+=|
T Consensus 16 GLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI~VPT 94 (436)
T COG0677 16 GLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFIICVPT 94 (436)
T ss_pred CCCCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEECCHHHCCCCCEEEEEECC
T ss_conf 246445788999987699-5575757889988875786425468688999999863971575685562548889999357
Q ss_pred HHHH------CCHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 4310------002888988874488889749999817
Q gi|254780405|r 127 PYGQ------GLAQQALAIIDKEGWLEPNALVIIEEY 157 (189)
Q Consensus 127 PY~~------~~~~~~l~~l~~~~~L~~~gliiiE~~ 157 (189)
|... .......+.|+ ..|+++-++++|+.
T Consensus 95 Pl~~~~~pDls~v~~aa~sIa--~~L~kG~LVIlEST 129 (436)
T COG0677 95 PLKKYREPDLSYVESAARSIA--PVLKKGDLVILEST 129 (436)
T ss_pred CCCCCCCCCHHHHHHHHHHHH--HHCCCCCEEEEECC
T ss_conf 767899988489999999999--75677888999647
No 302
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.05 E-value=1 Score=25.06 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 55896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++| +|.+ .+++|| +|+.++.+++.++-+.+.++..+. ++..+.+|+.
T Consensus 2 ~L~~Kv~lITGgs~G-IG~a~a~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dl~ 64 (246)
T PRK05653 2 SLQGKTALVTGASRG-IGRAIALRLAADGA-RVVIYDSNEEAAEALAEELRAAGG--EAALLVFDVT 64 (246)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECC
T ss_conf 989988999389758-99999999998799-999997999999999999996599--4899997289
No 303
>KOG0821 consensus
Probab=75.03 E-value=1.6 Score=23.93 Aligned_cols=76 Identities=26% Similarity=0.298 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 86778589999999877633364558967861100122210011016873301110001235667642001332210022
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNI 102 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~i 102 (189)
+.|-|.-.||.| ..+++..|..++-|.|.+.=.-+--|+++...||+|..-+..++.-.+. ...+..+
T Consensus 35 D~~lT~KIvK~A----------~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~I 102 (326)
T KOG0821 35 DLRLTDKIVKKA----------GNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA--APGKLRI 102 (326)
T ss_pred HHHHHHHHHHHC----------CCCCCCCEEEECCCCCCHHHHHHHCCHHHEEEEEECCCCCHHHHHHHHC--CCCEEEE
T ss_conf 537889999861----------6555240588469987204898862523526663156647478888753--8750575
Q ss_pred HHHHHHHH
Q ss_conf 34456654
Q gi|254780405|r 103 FFRDVLRL 110 (189)
Q Consensus 103 i~~D~~~~ 110 (189)
+.+|+..+
T Consensus 103 Hh~D~LR~ 110 (326)
T KOG0821 103 HHGDVLRF 110 (326)
T ss_pred ECCHHHHH
T ss_conf 20057776
No 304
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.69 E-value=6.2 Score=20.48 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=52.0
Q ss_pred CCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHHHH--CCCCCCCCCCC--C
Q ss_conf 122210011----016873301110001235667642001332210022344566----54210--03444431015--1
Q gi|254780405|r 58 GTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL----RLGKI--GNISPFQLVYL--D 125 (189)
Q Consensus 58 GsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~----~~~~~--~~~~~fDiIf~--D 125 (189)
|.|-+|+.. .++|. +|+.+|.|++.++.+++...-+.-..--+++..... .+... ......|+||+ .
T Consensus 7 GlGyVGl~~a~~lA~~G~-~V~g~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~dii~I~V~ 85 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVP 85 (411)
T ss_pred CCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEECC
T ss_conf 978779999999994899-4899989999999997798997898989999999863997998788998720999999768
Q ss_pred HHHHH------CCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 34310------00288898887448888974999981
Q gi|254780405|r 126 PPYGQ------GLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 126 PPY~~------~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
-|... .....+++.+.+ .++++.++++|+
T Consensus 86 TP~~~~g~~d~s~l~~a~~~i~~--~l~~~~lvii~S 120 (411)
T TIGR03026 86 TPLKEDGSPDLSYVESAAETIAK--HLRKGATVVLES 120 (411)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH--HCCCCCEEEEEC
T ss_conf 98666887213899999999997--668999899957
No 305
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.21 E-value=1.2 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356676420
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~ 91 (189)
.++|++++=-++++|. ++.+.+++|| +|+.++.+.+.++-+.+.+
T Consensus 3 rl~gK~~lITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l 50 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFAAEGA-RVAITGRDAATLEAARAEL 50 (249)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
T ss_conf 98998899937687899999999998799-9999969989999999985
No 306
>PRK06227 consensus
Probab=73.75 E-value=1.3 Score=24.49 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. |. ..+..|| +|+..+.+.++.....+.++..+. ++..+.+|+.
T Consensus 2 ~L~gKvalVTGas~GI-G~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs 64 (256)
T PRK06227 2 NLSGKVAIVTGGGQGI-GAAIAQTFAENGA-KVVIADIDEEAGLEREEMLRSNGL--DALFVKTDVS 64 (256)
T ss_pred CCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 8999889995866889-9999999998799-999996988899999999995599--1899981689
No 307
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=73.53 E-value=2.1 Score=23.32 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHCCCCCCCCCEEEECCCCCCCCHHHHHC----CCCCCHHHHHHHHHHHH-------------------HHHHHHCCCC
Q ss_conf 763336455896786110012221001101----68733011100012356-------------------6764200133
Q gi|254780405|r 39 LTHVYPVFLDSTRMLNIFAGTGSVGFEALS----RGCHYVLFVDNNSESIR-------------------LIRRNSELLG 95 (189)
Q Consensus 39 L~~~~~~~~~~~~vlDlfaGsG~lgiEalS----rGA~~v~~vE~~~~a~~-------------------~lk~N~~~~~ 95 (189)
+++.....+..++||=+ |.|++|.|.+. -|.+.++.+|-...... .+.+.++.++
T Consensus 10 ~G~~aq~kl~~s~VLii--G~~glG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLN 87 (425)
T cd01493 10 WGEHGQAALESAHVCLL--NATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELN 87 (425)
T ss_pred HHHHHHHHHHHCCEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 45999998976939999--9971199999872132897699995991878885766156677858839999999999847
Q ss_pred CCCCHHHHHHHHHHHHHH--CCCCCCCCCCCC
Q ss_conf 221002234456654210--034444310151
Q gi|254780405|r 96 VEKNCNIFFRDVLRLGKI--GNISPFQLVYLD 125 (189)
Q Consensus 96 ~~~~~~ii~~D~~~~~~~--~~~~~fDiIf~D 125 (189)
-.-+++++..+...+... .-...||+|.+.
T Consensus 88 p~V~v~~~~~~~~~~~~~~~~~~~~f~vVV~t 119 (425)
T cd01493 88 PDVNGSAVEESPEALLDNDPSFFSQFTVVIAT 119 (425)
T ss_pred CCCCEEEEECCHHHHHHCCHHHHCCCCEEEEE
T ss_conf 86854787068788642687675283389982
No 308
>PRK09242 tropinone reductase; Provisional
Probab=73.53 E-value=1.3 Score=24.57 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 455896786110012221001----10168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
..++|+++|=-++++| +|.+ .+.+|| +|+.++.+.+.++.+.+.+.......++..+.+|+.+
T Consensus 6 f~L~gK~alITGgs~G-IG~a~a~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~ 72 (258)
T PRK09242 6 WRLDGQTALITGASKG-IGLAIARELLGLGA-DVLIVARDADALAQARDELAEEFPERELHGLAADVSD 72 (258)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 6379999999484868-99999999998799-8999969889999999999864479729999930799
No 309
>PRK07201 short chain dehydrogenase; Provisional
Probab=72.89 E-value=1.2 Score=24.62 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.-++|+.+|=-+|.||. ++.+...+|| +|+.+..+.+.++-+.+.++..+. ++.++.+|+.
T Consensus 372 g~L~GKvalITGASSGIG~A~A~~LA~~GA-~Vvl~AR~~e~Le~v~~ei~~~Gg--~a~~~~~DVt 435 (663)
T PRK07201 372 GPLEGKHVIITGASSGIGRATAIKVAEAGA-TVFALARDGEKLDELVAEIRARGG--QAHAYTCDLT 435 (663)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 887994799938875999999999998799-899998999999999999995599--1899996279
No 310
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=72.46 E-value=7.2 Score=20.10 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=56.4
Q ss_pred CCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCC
Q ss_conf 89678611001222---100110168733011100012356676420013322100223445665---421003444431
Q gi|254780405|r 48 DSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR---LGKIGNISPFQL 121 (189)
Q Consensus 48 ~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~---~~~~~~~~~fDi 121 (189)
.+..++||+||++. +=|+||.+ ...-+.||++.++++..-+++..---.-.++-+++|-.+ +++.....+ -+
T Consensus 63 ~~~~lIElGsG~~~Kt~~LL~al~~-~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~~~~~~~~~~-rl 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGR-RL 140 (301)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECHHCHHHCCCCCCCCC-CE
T ss_conf 6764773178862378999998621-563887756899999999999977899768999633315744566557887-58
Q ss_pred CCCCHHHHH-------CCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 015134310-------0028889888744888897499998
Q gi|254780405|r 122 VYLDPPYGQ-------GLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 122 If~DPPY~~-------~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
+|. | +. ......|..+.+ .+.+++.+++-
T Consensus 141 ~~f--l-GSsIGNf~~~ea~~fL~~~~~--~l~~~d~lLiG 176 (301)
T TIGR03438 141 GFF--P-GSTIGNFTPEEAVAFLRRIRQ--LLGPGGGLLIG 176 (301)
T ss_pred EEE--C-CCCCCCCCHHHHHHHHHHHHH--HHCCCCEEEEE
T ss_conf 997--0-754478998999999999999--71999848994
No 311
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=72.16 E-value=2.8 Score=22.56 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred HHHHHHHHC----CCCCCCCCEEEECCCC-CCCCHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 999877633----3645589678611001-222100110-1687330111000123566764200133221002234456
Q gi|254780405|r 34 ALFDILTHV----YPVFLDSTRMLNIFAG-TGSVGFEAL-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 34 alFniL~~~----~~~~~~~~~vlDlfaG-sG~lgiEal-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
|||+=|++- ....+.|..+|=.+|| -|-|++.-+ .-||..|+..|.|.-..+.+|+ .+..--+.+...|.
T Consensus 143 ~iqePlGNAVhTvL~~~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleLAkk----~Gat~~vn~~kEd~ 218 (341)
T TIGR00692 143 AIQEPLGNAVHTVLESDLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLELAKK----MGATRVVNVAKEDL 218 (341)
T ss_pred HHHCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH----CCCCEEEECCCCCH
T ss_conf 66154110444652577688718998577478999999877278405996586479999987----09865870101476
Q ss_pred HHHH-HHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 6542-1003444431015134310002888988874488889749999
Q gi|254780405|r 108 LRLG-KIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 108 ~~~~-~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
.+.. .....+=+|++. +..=.+..++.-.+ ..+++|.+-+
T Consensus 219 ~k~v~~lt~geG~Dv~l-----EmSGaP~A~~~gL~--~~~~gGR~~~ 259 (341)
T TIGR00692 219 VKVVAELTSGEGVDVVL-----EMSGAPKALEQGLD--AVANGGRVAL 259 (341)
T ss_pred HHHHHHHCCCCCEEEEE-----ECCCCCHHHHHHHH--HHCCCCEEEE
T ss_conf 89888403889647998-----64899179999999--8506880898
No 312
>PRK08945 short chain dehydrogenase; Provisional
Probab=71.92 E-value=1.7 Score=23.86 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=37.9
Q ss_pred CCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 645589678611001222---1001101687330111000123566764200133
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLG 95 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~ 95 (189)
+..++|+.+|=-+|++|. +..+.+.+|| +|+.++.+.+.++.+.+.++..+
T Consensus 8 ~~~L~gK~~lITGas~GIG~aiA~~la~~Ga-~Vil~~r~~~~l~~~~~el~~~~ 61 (245)
T PRK08945 8 PDLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAG 61 (245)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8678979899948861899999999998799-89999698899999999999747
No 313
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=71.81 E-value=4.2 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHH
Q ss_conf 01222100110168733011100
Q gi|254780405|r 57 AGTGSVGFEALSRGCHYVLFVDN 79 (189)
Q Consensus 57 aGsG~lgiEalSrGA~~v~~vE~ 79 (189)
|.+|.-+++++....-.++.+|.
T Consensus 32 a~~g~~a~~~l~~~~~DliilDi 54 (229)
T PRK10161 32 AEDYDSAVNQLNEPWPDLILLDW 54 (229)
T ss_pred ECCHHHHHHHHHCCCCCEEEEEC
T ss_conf 89999999998528998999978
No 314
>PRK06346 consensus
Probab=71.73 E-value=1.5 Score=24.10 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=40.8
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 55896786110012221001----10168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.++|+.++=-++++| +|.+ .++.|| +|+.++.+.+.++-+.+.++..+. ++..+.+|+.+
T Consensus 2 ~l~gKv~lITGgs~G-IG~a~a~~la~~Ga-~V~i~~r~~e~~~~~~~~l~~~~~--~~~~~~~Dv~~ 65 (251)
T PRK06346 2 KLKGKVAIVTGAASG-MGKSIAELFAKEGA-KVVVADLNLERAQKVVEEITSNGG--TAIAVVANVTK 65 (251)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
T ss_conf 889988999475788-99999999998799-899997989999999999996399--08999778898
No 315
>PRK09072 short chain dehydrogenase; Provisional
Probab=71.61 E-value=1.6 Score=23.93 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5589678611001222---1001101687330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
+++|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++.+.+.+.
T Consensus 2 ~l~~K~vlITGassGIG~a~A~~la~~G~-~vil~~R~~~~L~~~~~~l~ 50 (262)
T PRK09072 2 DLKDKRVLLTGASGGIGEALAEALCAAGA-RLLLVGRNAEKLEALAARPY 50 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC
T ss_conf 98998899948623999999999998799-89999898999999999845
No 316
>PHA01634 hypothetical protein
Probab=71.53 E-value=2.9 Score=22.47 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45589678611001222100110168733011100012356676420013322100223445665421003444431015
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL 124 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~ 124 (189)
.++.++.+-=++|-.|+-++-.|-|||+.|+-.|+....-+.-++-.+-++.-+++..- + +|. ..-+.-|+..+
T Consensus 25 LnV~~ktiqIvGaDCGSsALYFLlrgA~~iiqyEKeE~Lrk~w~evC~~FnICdKa~mk-~---EW~--geY~~~difvm 98 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWN--GEYEDVDIFVM 98 (156)
T ss_pred EEECCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-C---HHC--CCCCCCCEEEE
T ss_conf 02214468996367527889999926467642307789999999998773601288860-1---114--86898868999
Q ss_pred CH
Q ss_conf 13
Q gi|254780405|r 125 DP 126 (189)
Q Consensus 125 DP 126 (189)
|-
T Consensus 99 DC 100 (156)
T PHA01634 99 DC 100 (156)
T ss_pred EC
T ss_conf 76
No 317
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=71.10 E-value=1.6 Score=24.01 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=40.2
Q ss_pred CCCCCCEEEECCC-CCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4558967861100-122210011016-873301110001235667642001
Q gi|254780405|r 45 VFLDSTRMLNIFA-GTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 45 ~~~~~~~vlDlfa-GsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~~ 93 (189)
..+++++|+=++. |.|+...|||-| |..+.+.||.|.-++..+.+.+..
T Consensus 26 ekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A 76 (263)
T COG1179 26 EKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHA 76 (263)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHH
T ss_conf 997509489994584539999999981888189971201022232126677
No 318
>PRK07062 short chain dehydrogenase; Provisional
Probab=70.52 E-value=1.8 Score=23.71 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 455896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++| +|.+ .+..|| +|+..+.+.+.++.+.+.+..-.-..++..+.+|+.
T Consensus 4 ~~L~gK~alITG~s~G-IG~a~a~~la~~Ga-~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt 69 (265)
T PRK07062 4 IQLEGRVAVVTGGSSG-IGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVL 69 (265)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 7889998999575779-99999999998799-999997988999999999987369965999975799
No 319
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.25 E-value=1.7 Score=23.79 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=40.6
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++|. +....+..|| +|+.++.+.+..+-+.+-++..+. ++..+.+|+.
T Consensus 3 ~~L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs 66 (253)
T PRK06172 3 MTFSGQVALVTGGAAGIGRATAIAFAREGA-KVVVADRDAAGGEETVALIREAGG--EALFIACDVT 66 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 886999899937576899999999998799-899997988999999999996499--3799981899
No 320
>PRK06138 short chain dehydrogenase; Provisional
Probab=70.13 E-value=1.7 Score=23.78 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=40.7
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
+++|+.+|=-++++|. +....+..|| +|+.++.+.+.++-..+.+.. ..++..+.+|+.+
T Consensus 2 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~Dvs~ 64 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAA---GGRAFARQGDVGS 64 (252)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHC---CCCEEEEEECCCC
T ss_conf 88998899947467999999999998799-899996887899999999837---9919999942899
No 321
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.12 E-value=4.4 Score=21.36 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=60.0
Q ss_pred EEEEEECCEEEECCCCCCC-CC--------CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH---HHCCCCCC
Q ss_conf 9864108867443788886-77--------858999999987763336455896786110012221001---10168733
Q gi|254780405|r 6 IIGGKFQRRLLHTPQNRSI-RP--------SDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE---ALSRGCHY 73 (189)
Q Consensus 6 ii~G~~kg~~l~~~~~~~~-RP--------t~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE---alSrGA~~ 73 (189)
.+.+.+++-+...|.+..+ .| +++.+.+ +...+++.. -+-++++=+ |-|.+|.. .|.+|. .
T Consensus 184 ~VvaI~R~g~~iIP~g~t~l~~gD~l~vig~~~~i~~-~~~~~g~~~---~~~~~v~I~--Ggg~ig~~la~~L~~~~-~ 256 (455)
T PRK09496 184 RVVAIFRNGRLIIPRGDTVIEAGDEVFFVAASEHIRR-VMSELGRLE---KPVKRIMIA--GGGNIGLYLAKLLEKGY-S 256 (455)
T ss_pred EEEEEEECCEEECCCCCCEEECCCEEEEEECHHHHHH-HHHHHCCCC---CCCCEEEEE--CCCHHHHHHHHHHHCCC-E
T ss_conf 9999998998970699838733889999925776999-999858654---666518998--78699999999874088-3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHCCCCCCCCCCC
Q ss_conf 011100012356676420013322100223445665--421003444431015
Q gi|254780405|r 74 VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR--LGKIGNISPFQLVYL 124 (189)
Q Consensus 74 v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~--~~~~~~~~~fDiIf~ 124 (189)
|+.||.|++.|+.+.+.+. ++.++++|+.+ ++........|.+.+
T Consensus 257 v~iIe~d~~~~~~la~~l~------~~~Vi~GD~td~~~L~e~gi~~aD~~ia 303 (455)
T PRK09496 257 VKLIERDPERAEELAEELP------NTLVLHGDGTDQELLEEEGIDEADAFIA 303 (455)
T ss_pred EEEECCCHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHCCCCCCEEEE
T ss_conf 8997089899999997478------5399978876889997636455648999
No 322
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=69.84 E-value=1.9 Score=23.50 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCCCCCEEEECCCCCCCC
Q ss_conf 455896786110012221
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSV 62 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~l 62 (189)
.+.+|+..+|-|||.|||
T Consensus 30 ~D~~Gk~YIDFlaGAGaL 47 (413)
T TIGR02407 30 WDEDGKEYIDFLAGAGAL 47 (413)
T ss_pred EECCCCEEECHHHCCCCC
T ss_conf 703487311021015646
No 323
>KOG1269 consensus
Probab=69.45 E-value=6.8 Score=20.23 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=54.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015-13
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL-DP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~-DP 126 (189)
.+..++|+.||.|-...+--.-+...++.++.+..-+.....-.....+.++..+..+|..+ .......||.+.+ |-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~--~~fedn~fd~v~~ld~ 187 (364)
T KOG1269 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK--MPFEDNTFDGVRFLEV 187 (364)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHC--CCCCCCCCCCEEEEEE
T ss_conf 54111224767675167788862577517876799999988777888764202352255514--8877466674898761
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 431000288898887448888974999981
Q gi|254780405|r 127 PYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 127 PY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
==..+....+++-+. +.++|+|+.+.+.
T Consensus 188 ~~~~~~~~~~y~Ei~--rv~kpGG~~i~~e 215 (364)
T KOG1269 188 VCHAPDLEKVYAEIY--RVLKPGGLFIVKE 215 (364)
T ss_pred CCCCCCHHHHHHHHH--CCCCCCCEEEEHH
T ss_conf 244786999999885--0367771688488
No 324
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=69.42 E-value=1.3 Score=24.43 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HHCCCCCCCCCC
Q ss_conf 012221001----1016873301110001235667642001332210022344566542---100344443101
Q gi|254780405|r 57 AGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG---KIGNISPFQLVY 123 (189)
Q Consensus 57 aGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~---~~~~~~~fDiIf 123 (189)
.|+|-+|-. .+++|...|+.+|.+......+++++.......+++++.+|+.+.. +.....+.|.||
T Consensus 5 GGaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~~~~D~V~ 78 (280)
T pfam02719 5 GGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEEYGVDTVF 78 (280)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 48867999999999968998899990887427789999886267898389981168989999998754999999
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.33 E-value=1.8 Score=23.64 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=38.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++.+.+.+|| +|+..+.+.+.++-+.+.++. .++..+.+|+.
T Consensus 3 ~l~gK~alITGgs~GIG~aia~~la~~G~-~V~i~~r~~~~~~~~~~~~~~----~~~~~~~~Dv~ 63 (250)
T PRK07231 3 RLEGKVAIVTGAGSGFGEGIARRFAAEGA-RVVVTDRNQEAAERVAAEIRG----GRAIAVAADVS 63 (250)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC----CCEEEEEEECC
T ss_conf 76998899938886899999999998799-999997988999999998449----96799993079
No 326
>PRK05875 short chain dehydrogenase; Provisional
Probab=68.76 E-value=1.9 Score=23.46 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=39.8
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322-10022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVE-KNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ii~~D~~ 108 (189)
..++|+++|=-++++|. ++.+.+++|| +|+.++.+.+.++.+.+.+...... ..+..+.+|+.
T Consensus 3 l~L~gK~alVTGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~~~~Dvs 69 (277)
T PRK05875 3 LSLQDRTYLVTGGGSGIGKGVAAALVAAGA-AVMIVGRNPDKLAAAAEEIEALAGGAGAVRYEPADVT 69 (277)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 468999899948874999999999998799-8999979889999999999961278862899957899
No 327
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=68.76 E-value=5.3 Score=20.86 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 30111000123566764200133221002234456654210034444310151343100028889888744888897499
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALV 152 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gli 152 (189)
+|..||-|+...+.+++-++..+.. .+. ...|..+.++.....+||+|++|==-..-...++++.+.+......--+|
T Consensus 7 rILivDD~~~~r~~l~~~L~~~g~~-~v~-~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii 84 (129)
T PRK10610 7 KFLVVDDFSTMRRIVRNLLKELGFN-NVE-EAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 84 (129)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCC-EEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999979899999999999986997-899-98999999999985899999981899999899999999857777899689
Q ss_pred EEE
Q ss_conf 998
Q gi|254780405|r 153 IIE 155 (189)
Q Consensus 153 iiE 155 (189)
++-
T Consensus 85 ~~T 87 (129)
T PRK10610 85 MVT 87 (129)
T ss_pred EEE
T ss_conf 998
No 328
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.69 E-value=1.9 Score=23.48 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=40.2
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-++++|. +....+.+|| +|+..+.+.+.++-+.+.++..+. ++..+.+|+.
T Consensus 2 ~L~gK~alVTG~s~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~ 64 (258)
T PRK07890 2 LLKDKVVVVSGVGPGLGTTLAVRAAREGA-DVVLAARTAERLDEVAKQIDDLGR--RALAVVTDIT 64 (258)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 68998899968565899999999998799-899997989999999999996499--5899981699
No 329
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=68.32 E-value=1.9 Score=23.57 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 0111000123566764200133221002234456654210034444310151
Q gi|254780405|r 74 VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 74 v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
|..||=|+-..++++.-++.++.. + ....|..+.++.....+||+||||
T Consensus 671 VLvVEDN~iN~~vi~~lL~~lG~~--v-~~A~nG~eAle~~~~~~fDLILMD 719 (920)
T PRK11107 671 VMAVDDNPANLKLIGALLEEQVEH--V-VLCDSGHQAVELAKQRPFDLIFMD 719 (920)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHCCCCCEEEEC
T ss_conf 999848899999999999984988--9-998999999999747999789988
No 330
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=68.15 E-value=2.1 Score=23.26 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=40.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++...+..|| +|+..+.+++.++-+.+.++..+. ++..+.+|+.
T Consensus 6 ~L~gK~alVTG~~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dvt 68 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAEKAVAKLRQEGI--KAHAAAFNVT 68 (254)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 89999899968567899999999998699-999996988999999999984498--1899982689
No 331
>PRK06125 short chain dehydrogenase; Provisional
Probab=68.04 E-value=2.4 Score=22.95 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=40.0
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D 106 (189)
.+++|+++|=-++++|. ++...+..|| +|+.++.+.+.++-+.+.+..... .++.++.+|
T Consensus 3 ~~l~gK~alITG~s~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~~-~~~~~~~~D 65 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGC-HLVLAARDADALAALAADLRAAHG-VDVAVHALD 65 (259)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 886999899968776899999999998799-899997988999999999987009-866999888
No 332
>KOG0519 consensus
Probab=68.03 E-value=2.9 Score=22.46 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 69 RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 69 rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
|| .++..+|-|.-..++++..+++++.+-.+..--.++...+ .....||+||||
T Consensus 665 ~g-~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~--~~~~~y~~ifmD 718 (786)
T KOG0519 665 TG-PKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKL--KPPHSYDVIFMD 718 (786)
T ss_pred CC-CCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHC--CCCCCCCEEEEE
T ss_conf 36-7657855871019999989997396457428869999863--899863279997
No 333
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.99 E-value=2.1 Score=23.25 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+++|+.+|=-++++|. ++.+.+.+|| +|+..+.+.+.++.+.+-++..+ .++..+.+|+.+
T Consensus 3 ~~l~gKvalVTGgs~GIG~a~A~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~ 67 (262)
T PRK13394 3 SNLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTN 67 (262)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 788999899958577899999999998799-99999798899999999999629--939999815899
No 334
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.98 E-value=5 Score=21.05 Aligned_cols=75 Identities=27% Similarity=0.299 Sum_probs=40.1
Q ss_pred CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHCCHHHHHH
Q ss_conf 22100110168733011100012356676420013322100223445665421003444431015-13431000288898
Q gi|254780405|r 60 GSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL-DPPYGQGLAQQALA 138 (189)
Q Consensus 60 G~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~-DPPY~~~~~~~~l~ 138 (189)
||+++ ||++-..+|+.+|.+++.++.++++ +.-+.+ ..|. +. ....|+|++ -|| ....+.++
T Consensus 14 gSla~-al~~~~~~V~g~d~~~~~~~~A~~~----g~id~~---~~~~-~~-----~~~aDliila~Pv---~~~~~~~~ 76 (280)
T PRK07417 14 GSLGL-DLRSLGHTVYGVSRRESTCERAIER----GLVDEA---STDL-SL-----LKDCDLVILALPI---GLLLPPSE 76 (280)
T ss_pred HHHHH-HHHHCCCEEEEEECCHHHHHHHHHC----CCCCEE---CCCH-HH-----HCCCCEEEECCCH---HHHHHHHH
T ss_conf 99999-9996899799997999999999986----997520---2787-46-----0579989987974---77899999
Q ss_pred HHHHCCCCCCCEEEE
Q ss_conf 887448888974999
Q gi|254780405|r 139 IIDKEGWLEPNALVI 153 (189)
Q Consensus 139 ~l~~~~~L~~~glii 153 (189)
.+.. .++++++|.
T Consensus 77 ~~~~--~l~~~~iit 89 (280)
T PRK07417 77 ELIP--ALPPEAIVT 89 (280)
T ss_pred HHHH--HCCCCCEEE
T ss_conf 9986--478984899
No 335
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=67.81 E-value=7.1 Score=20.11 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=47.5
Q ss_pred CCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH---HHHHH-HHHHCCCCCC
Q ss_conf 8967861100122210011----01687330111000123566764200133221002234---45665-4210034444
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFF---RDVLR-LGKIGNISPF 119 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~---~D~~~-~~~~~~~~~f 119 (189)
.|.++| +.+|+|++|+-| -.+|| +|+.+..+++..+.+++ +++.. ..++. .|..+ ..+....+.+
T Consensus 104 ~g~~Vl-I~gg~G~vG~~aiqlak~~Ga-~Vi~t~~s~~k~~~~~~----lG~~~-~~v~~~~~~~~~~~v~~~t~g~gv 176 (288)
T smart00829 104 PGESVL-IHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRE----LGIPD-DHIFSSRDLSFADEILRATGGRGV 176 (288)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----CCCCC-CEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 999999-978986777999999997398-30034088899999997----69996-076217995099999987089882
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 3101513431000288898887448888974999
Q gi|254780405|r 120 QLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 120 DiIf~DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
|+|| |.. +.....+.++ .|+++|.++
T Consensus 177 Dvv~-d~v-gg~~~~~~~~------~l~~~G~~v 202 (288)
T smart00829 177 DVVL-NSL-AGEFLDASLR------CLAPGGRFV 202 (288)
T ss_pred EEEE-ECC-CHHHHHHHHH------HHCCCCEEE
T ss_conf 7999-898-6899999999------753698899
No 336
>PRK07774 short chain dehydrogenase; Provisional
Probab=67.43 E-value=2.1 Score=23.21 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=39.3
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 55896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++| +|.+ .+..|| +|+..+.+.+.++-+.+-++..+. ++..+.+|+.
T Consensus 3 ~L~gK~alVTGgs~G-iG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~ 65 (250)
T PRK07774 3 DFDDKVAIVTGAAGG-IGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGG--TAIAVQVDVS 65 (250)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 779988999797688-99999999998699-999997988999999999985598--4999982589
No 337
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=67.38 E-value=1.9 Score=23.52 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=40.0
Q ss_pred CCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5896786110012221001----10168733011100012356676420013322100223445665
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
++|+.+|=-++++| +|.+ .+..|| +|+.++.+.+.++-+.+.++..+ .++..+.+|+.+
T Consensus 1 L~gKvalITG~s~G-IG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dv~d 63 (250)
T TIGR03206 1 LKDKTAIVTGGGGG-IGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITD 63 (250)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECCCC
T ss_conf 95199999685768-99999999998799-99999798899999999999539--928999944899
No 338
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.25 E-value=1.8 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 49 STRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 49 ~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++-+.+.++..+. ++..+.+|+.
T Consensus 1 GKv~lITGassGIG~a~A~~la~~Ga-~vvl~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs 60 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-RLVLAARNEERLASLAQELANYGA--EALVVATDVS 60 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 99999958101999999999998799-899998899999999999995499--6799980799
No 339
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=67.25 E-value=3.1 Score=22.23 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHH--HCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCC--CCCCCCEEEE
Q ss_conf 0022344566542100344443101513--431--000288898887448888974999981778886--7578857999
Q gi|254780405|r 99 NCNIFFRDVLRLGKIGNISPFQLVYLDP--PYG--QGLAQQALAIIDKEGWLEPNALVIIEEYAGTCI--SVGAAFHFLQ 172 (189)
Q Consensus 99 ~~~ii~~D~~~~~~~~~~~~fDiIf~DP--PY~--~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~--~~~~~~~~~~ 172 (189)
..+++.+|+.+.++... .++|.+|+|+ |-. +-...+++..|.. +.++++.+.--+.....- -...+|++-+
T Consensus 32 ~L~L~~GDa~~~l~~l~-~~~DawflDgFsP~~nPemWs~~~f~~i~~--~~~~~~~l~Tys~a~~Vr~~L~~aGF~v~k 108 (124)
T pfam05430 32 TLDLWFGDARAALPELD-FKADAWFLDGFSPAKNPEMWTVEFFALLAR--RSKPGGTLATYSSAGFVRRGLIAAGFHVGK 108 (124)
T ss_pred EEEEEECCHHHHHHHCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEEECCHHHHHHHHHCCCEEEE
T ss_conf 99999640999988462-301099977989531810321999999999--726898899875568999999987988997
Q ss_pred EEECCCEE
Q ss_conf 83418569
Q gi|254780405|r 173 ERKYGDTK 180 (189)
Q Consensus 173 ~k~yG~t~ 180 (189)
.+-+|..+
T Consensus 109 ~~G~g~KR 116 (124)
T pfam05430 109 RPGFGRKR 116 (124)
T ss_pred CCCCCCCC
T ss_conf 89899887
No 340
>PRK07479 consensus
Probab=67.05 E-value=2.2 Score=23.12 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222100----110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.++|+.+|=-++++|. |. ..+.+|| +|+..+.+++.++-+.+-++..+ .++..+.+|+.+
T Consensus 2 ~L~gK~alITGgs~GI-G~a~a~~la~~G~-~V~i~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~ 65 (252)
T PRK07479 2 RLSGKVAIVTGAGSGF-GEGIAKRFAREGA-KVVVADLNAAAAERVASEIADAG--GNAIAVAADVSR 65 (252)
T ss_pred CCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 8799889993887689-9999999998799-99999798999999999998539--978999925899
No 341
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=66.99 E-value=2.4 Score=22.95 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 645589678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+..++|+.+|=-++++| +|. +.+..|| +|+..+.+.+.++.+.+.++..+. ++..+.+|+.
T Consensus 6 ~~~L~gKvalVTGas~G-IG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~ 70 (255)
T PRK06113 6 NLRLDGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG--QAFACRCDIT 70 (255)
T ss_pred CCCCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 76799998999588778-99999999998799-999996988999999999996599--0899983689
No 342
>PRK06198 short chain dehydrogenase; Provisional
Probab=66.89 E-value=2.4 Score=22.90 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 55896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+++|=-++++| +|.+ .+..||+.|+..+.+.+..+.+.+.++..+. ++..+.+|+.
T Consensus 3 ~L~gK~alVTGas~G-IG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~ 66 (268)
T PRK06198 3 RLDGKIALVTGGTQG-LGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGA--KAVFVQADLA 66 (268)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 889988999585778-999999999987993899962988899999999995499--6799982689
No 343
>KOG2918 consensus
Probab=66.83 E-value=12 Score=18.87 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCC-CCCHHHHHHHHHHHHHHH
Q ss_conf 5899999998776333645589678611001222100110168-733011100012356676
Q gi|254780405|r 28 DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRG-CHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 28 ~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrG-A~~v~~vE~~~~a~~~lk 88 (189)
+--|+-++-..|.+ .-..+.++.|+||+-.+.+..+|-| ...+-|+|.|-..+-..|
T Consensus 71 ~~aI~~~v~~Fl~~----~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rK 128 (335)
T KOG2918 71 TMAIRHAVRAFLEQ----TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERK 128 (335)
T ss_pred HHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999999985----57865999737775512331220477676328982372898877
No 344
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=66.77 E-value=4.1 Score=21.52 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=53.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCC-CC-CCHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHH---HHHHHHC-CCCCCC
Q ss_conf 8967861100122210011016-87-330111000123566764200133221-002234456---6542100-344443
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSR-GC-HYVLFVDNNSESIRLIRRNSELLGVEK-NCNIFFRDV---LRLGKIG-NISPFQ 120 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSr-GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~-~~~ii~~D~---~~~~~~~-~~~~fD 120 (189)
.+..-+|+=.|-|.=+=.-||. +. -+-+++|.|+.|++.+++-+..+ .+ ++.++.+.- ++.+... ...+||
T Consensus 27 ~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~--~~~~~~~~~~~F~~~~~~~~~~~~~~k~d 104 (323)
T TIGR00006 27 PDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDF--EGRRVVLIHDNFANFFEYLKELDLVTKID 104 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHCCCCEEEEE
T ss_conf 8873654025851789999852399950788747989999999985321--06757885076034200321158815774
Q ss_pred CCCCC
Q ss_conf 10151
Q gi|254780405|r 121 LVYLD 125 (189)
Q Consensus 121 iIf~D 125 (189)
-|.+|
T Consensus 105 GIL~D 109 (323)
T TIGR00006 105 GILVD 109 (323)
T ss_pred EEEEC
T ss_conf 58861
No 345
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.74 E-value=3.6 Score=21.90 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=56.7
Q ss_pred CCCCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH---HHCCCCC
Q ss_conf 558967861100122210011----016873301110001235667642001332210022344566542---1003444
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG---KIGNISP 118 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~---~~~~~~~ 118 (189)
.+.|+++|=- .|+||+|=|- ++.++++++.+|.|..++-.+.+.+...--..+...+-+|+.+.. .....-+
T Consensus 247 ~~~gK~vLVT-GagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 247 MLTGKTVLVT-GGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred HCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 7079889996-898736799999998549878999617637799999999862787516899635346899999986388
Q ss_pred CCCCCCCHHH
Q ss_conf 4310151343
Q gi|254780405|r 119 FQLVYLDPPY 128 (189)
Q Consensus 119 fDiIf~DPPY 128 (189)
.|+||=-.-|
T Consensus 326 vd~VfHAAA~ 335 (588)
T COG1086 326 VDIVFHAAAL 335 (588)
T ss_pred CCEEEEHHHH
T ss_conf 8668875555
No 346
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=66.66 E-value=2.9 Score=22.46 Aligned_cols=88 Identities=22% Similarity=0.335 Sum_probs=49.2
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCC------CCHHHHHHHHHHHHH--HCCCC-CCCCCCC--CHH
Q ss_conf 210011016873301110001235667642001--3322------100223445665421--00344-4431015--134
Q gi|254780405|r 61 SVGFEALSRGCHYVLFVDNNSESIRLIRRNSEL--LGVE------KNCNIFFRDVLRLGK--IGNIS-PFQLVYL--DPP 127 (189)
Q Consensus 61 ~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~--~~~~------~~~~ii~~D~~~~~~--~~~~~-~fDiIf~--DPP 127 (189)
+|=.||-+|| -++.+++.+.=+++.=+--++. +.+. ++.++ ..+-..+.+ ..... ++|+||| |||
T Consensus 22 alm~EaQ~Rg-H~~f~~~~~~Ls~~~G~~~A~~~~~~~~pv~~~~~~WQv-~~~w~~~~~~~~~~L~d~~d~vlMRkDPP 99 (322)
T TIGR01380 22 ALMEEAQKRG-HELFFYEPGDLSVKNGRVFARAAPVKVLPVQLDDDRWQV-KQDWYTLGEKVRLALKDELDVVLMRKDPP 99 (322)
T ss_pred HHHHHHHHCC-CEEEEEECCCEEEECCHHHEEEEEEEEEEEEECCCCCEE-CHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 9998985469-389998436111102311100210668605871880101-12788876654201135742999847509
Q ss_pred HHHCC--HHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 31000--288898887448888974999981
Q gi|254780405|r 128 YGQGL--AQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 128 Y~~~~--~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
|+..+ ...+|+.+.. .|..++-+
T Consensus 100 f~~~Y~yaT~lLe~~~~------~g~~viN~ 124 (322)
T TIGR01380 100 FDMEYIYATYLLELAEP------TGTLVINS 124 (322)
T ss_pred CCHHHHHHHHHHHHHHH------CCCEEEEC
T ss_conf 86315446778877842------79679848
No 347
>PRK07576 short chain dehydrogenase; Provisional
Probab=66.59 E-value=2.1 Score=23.27 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=45.6
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--
Q ss_conf 55896786110012221001----10168733011100012356676420013322100223445665------4210--
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI-- 113 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~-- 113 (189)
+++|+++|=-++++| +|.+ .+..|| +|+..+.+.+.++-..+.++..+. ++..+.+|+.+ +.+.
T Consensus 5 ~L~gK~alVTGgs~G-IG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~ 80 (260)
T PRK07576 5 RLAGKNVFVVGGTSG-INLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGP--EALGVSADVRDYAAVEAAFAAIA 80 (260)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHH
T ss_conf 238998999589619-99999999998799-999997988999999999995399--48999931899999999999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 03444431015
Q gi|254780405|r 114 GNISPFQLVYL 124 (189)
Q Consensus 114 ~~~~~fDiIf~ 124 (189)
....+.|++..
T Consensus 81 ~~~G~iDiLVn 91 (260)
T PRK07576 81 DEFGPIDVLVS 91 (260)
T ss_pred HHHCCCCEEEE
T ss_conf 98499989998
No 348
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=66.48 E-value=2.3 Score=23.07 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 455896786110012221001----10168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.+++|+.+|=-++++|. |.+ .+..|| +|+..+.+.+.++-+.+.++..+. ++..+.+|+.+
T Consensus 10 ~~L~gK~alITGgs~GI-G~~ia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~ 74 (259)
T PRK06124 10 FSLAGQVALVTGSARGL-GLEIARALAEAGA-HVLVNGRNAARVEAAVAALRAAGG--AAEALVFDISD 74 (259)
T ss_pred CCCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCC
T ss_conf 09999989992867489-9999999998799-999996988999999999996599--58999951799
No 349
>KOG0022 consensus
Probab=66.38 E-value=2.3 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=26.6
Q ss_pred CCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 122210011----01687330111000123566764
Q gi|254780405|r 58 GTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 58 GsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
|-|++|+.+ -.+||++++.||.|++-.+.+++
T Consensus 200 GLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022 200 GLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred ECCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 054578899876776186517998558789899876
No 350
>PRK07109 short chain dehydrogenase; Provisional
Probab=66.24 E-value=2.1 Score=23.29 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=43.9
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.++++.+|=-+|.||. +..++..+|| +|+.+..+.+.++.+.+-++..+. ++..+.+|+.+
T Consensus 5 ~l~~KvVvITGASsGIGra~A~~fA~~Ga-~Vvl~aR~~~~L~~~a~e~~~~G~--~~~~~~~DVsd 68 (338)
T PRK07109 5 PLGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEGLAAEIRAAGG--EALAVVADVAD 68 (338)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEEEECCC
T ss_conf 06989899948434999999999998799-899998999999999999996398--18999801799
No 351
>pfam04669 DUF579 Protein of unknown function (DUF579). This is a eukaryotic family of uncharacterized proteins.
Probab=66.09 E-value=8.4 Score=19.68 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHH
Q ss_conf 99987763336455896786110012221001101687330111000123566764200133---221002234456654
Q gi|254780405|r 34 ALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLG---VEKNCNIFFRDVLRL 110 (189)
Q Consensus 34 alFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~---~~~~~~ii~~D~~~~ 110 (189)
..++.|++..+ -+++|=.+-|-.++-.-++--|. ..+|+|-|+.-++.+++..-.+. +.-..++.+ +.++
T Consensus 5 ~~~~vl~~~~p----pcNlLVFGLg~dsl~w~alN~gG-rTvFleed~~~~~~~~~~~P~l~~y~v~Y~t~~~~--a~~L 77 (187)
T pfam04669 5 WASKALQHAEP----YCNLLVFGLGHDSLMWTALNDGG-RTVFLEEDPSIYEKFRKDFPELEAYHVVYRTKVSD--ADEL 77 (187)
T ss_pred HHHHHHHHCCC----CCCEEEECCCCCHHHHHHHCCCC-EEEEECCCHHHHHHHHHHCCCCEEEEEEEECHHCC--HHHH
T ss_conf 99999974399----97479960772358999737797-27875178899998874098753789887502304--8999
Q ss_pred HHHC---------------------------CCCCCCCCCCCHHH
Q ss_conf 2100---------------------------34444310151343
Q gi|254780405|r 111 GKIG---------------------------NISPFQLVYLDPPY 128 (189)
Q Consensus 111 ~~~~---------------------------~~~~fDiIf~DPPY 128 (189)
+... -..++|+|++|.|=
T Consensus 78 ~~~~~~~~c~~~~~~~~s~c~Lal~~lP~~vy~~~WDvi~VD~P~ 122 (187)
T pfam04669 78 KSAAKDPECRPVQNLLFSDCKLALNDLPNEVYKEKWDRIFVDAPE 122 (187)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCEEEEECCC
T ss_conf 875227767666554557562311259889955706689980899
No 352
>PRK07035 short chain dehydrogenase; Provisional
Probab=65.64 E-value=2.7 Score=22.60 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=39.1
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 5589678611001222---1001101687330111000123566764200133221002234456
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
+++|+++|=-++++|. +....+.+|| +|+..+.+.+.++.+.+.++..+. ++..+.+|+
T Consensus 5 ~L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv 66 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGG--KAEALACHI 66 (252)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCC
T ss_conf 67899899958874999999999998799-899997988999999999996499--579998248
No 353
>PRK07478 short chain dehydrogenase; Provisional
Probab=64.85 E-value=2.5 Score=22.79 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=40.9
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
.++|+.+|=-++++|. +....+..|| +|+..+.+.+.++.+.+-++..+. ++..+.+|+.+
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~ei~~~g~--~~~~~~~Dvt~ 66 (254)
T PRK07478 3 LLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRD 66 (254)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 88998799958876899999999998799-999997988999999999996499--08999768999
No 354
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=64.79 E-value=3.9 Score=21.69 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCC-----CCCCCHHHHHCC
Q ss_conf 9999999877633364558967861100-----122210011016
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFA-----GTGSVGFEALSR 69 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfa-----GsG~lgiEalSr 69 (189)
|--|++|-+|-- ..++-.++|++|= |.|.+|-||.||
T Consensus 129 KG~Ea~~T~llE---~~w~K~RIlEvYLNs~EwG~GvfGaEAAsr 170 (228)
T TIGR02070 129 KGLEAWITVLLE---TLWSKKRILEVYLNSVEWGNGVFGAEAASR 170 (228)
T ss_pred HHHHHHHHHHHH---HHHCCCEEEEEEEEEEEECCCCHHHHHHHH
T ss_conf 667999999998---874873114111101016658047789977
No 355
>PRK07776 consensus
Probab=64.52 E-value=2.7 Score=22.57 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=35.1
Q ss_pred CCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 645589678611001222---1001101687330111000123566764200
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
..+++|+++|=-++++|. ++...++.|| +|+..+.+++.++-+.+.+.
T Consensus 3 ~~~L~gKv~lITG~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~l~~~~~~l~ 53 (252)
T PRK07776 3 SLDLTGRTAIVTGASRGIGLAIAQALAAAGA-NVVITARKQEALDEAAAQLG 53 (252)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC
T ss_conf 8899999899947787999999999998799-89999798899999999847
No 356
>PRK09186 flagellin modification protein A; Provisional
Probab=63.58 E-value=2.7 Score=22.65 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=39.7
Q ss_pred CCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
++|+.+|=-++++| +|.+ .+..|| +|+..+.+.+..+-+.+.+...+- .++..+.+|+.
T Consensus 2 L~gK~~lVTGgs~G-IG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~-~~v~~~~~Dvt 64 (255)
T PRK09186 2 LEGKTILITGAGGL-IGSALVKAILEAGG-IVIAADINKEALNKLLESLGTIEK-TKLTLVELDIT 64 (255)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCC-CEEEEEECCCC
T ss_conf 89598999795868-99999999998799-999996988999999999987059-80799984689
No 357
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=63.58 E-value=5.4 Score=20.84 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HH---HHHHHHHHCCCCCCCCCCCC--HHHHHCCHHHHHHHHHHCCC
Q ss_conf 3011100012356676420013322100223--44---56654210034444310151--34310002888988874488
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIF--FR---DVLRLGKIGNISPFQLVYLD--PPYGQGLAQQALAIIDKEGW 145 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii--~~---D~~~~~~~~~~~~fDiIf~D--PPY~~~~~~~~l~~l~~~~~ 145 (189)
+++-+|=|++-|+.|++-+. .+++++++ .. |+.++++ .++=|++.+| -||-++..- ||+|.+-..
T Consensus 4 ri~i~DDNkEFc~lL~eY~~---~Q~D~EVvG~A~nG~~a~~~I~---~q~PD~vvLDIIMPhLDGiGV--LEKl~~~~~ 75 (270)
T TIGR02875 4 RIVIADDNKEFCNLLKEYLA---AQEDMEVVGVAHNGVDALELIK---EQKPDVVVLDIIMPHLDGIGV--LEKLNEIEL 75 (270)
T ss_pred EEEEEECCHHHHHHHHHHHH---CCCCEEEEEECCCHHHHHHHHH---HCCCCEEEECCCCCCCCHHHH--HHHHHHHHH
T ss_conf 89998288899999999985---2898389974147689999996---089989995150430005799--999889887
Q ss_pred C-CCCEEEEE
Q ss_conf 8-89749999
Q gi|254780405|r 146 L-EPNALVII 154 (189)
Q Consensus 146 L-~~~gliii 154 (189)
. +|. +|++
T Consensus 76 ~~~P~-vi~L 84 (270)
T TIGR02875 76 KARPR-VIML 84 (270)
T ss_pred HCCCC-EEEE
T ss_conf 44895-8885
No 358
>KOG0919 consensus
Probab=63.16 E-value=2.5 Score=22.81 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCEEEECCCCCCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 967861100122210--011016873301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 49 STRMLNIFAGTGSVG--FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 49 ~~~vlDlfaGsG~lg--iEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
-.+||.|++|-|.|- +|-.---|.-|.++|.+..|-++-.-|... ++-....+---.+.++ ..-.+|++.|-|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~-~L~k~~~I~~lt~kef----d~l~~~m~lMSP 77 (338)
T KOG0919 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHS-NLVKTRNIQSLTVKEF----DKLQANMLLMSP 77 (338)
T ss_pred CEEHHHHHHCCCHHHHHHHHHCCCHHHEEEEECCHHHHHHHHCCCCC-CHHHCCCCCEEEHHHH----HHCCCCEEEECC
T ss_conf 41333555432145656765168645278773342677888418543-1220135441128664----101455585079
Q ss_pred HH
Q ss_conf 43
Q gi|254780405|r 127 PY 128 (189)
Q Consensus 127 PY 128 (189)
|-
T Consensus 78 pC 79 (338)
T KOG0919 78 PC 79 (338)
T ss_pred CC
T ss_conf 99
No 359
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.04 E-value=3.1 Score=22.26 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++| +|. +.+.+|+.-+...+.+.+.++.+.+.++..+. ++..+.+|+.
T Consensus 2 ~L~gK~vlITGgs~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~ 65 (247)
T PRK05565 2 KLMGKVAIVTGASGG-IGRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGG--DAIAVKADVS 65 (247)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 989988999378458-999999999987998999817998999999999996399--0899983589
No 360
>KOG3045 consensus
Probab=62.83 E-value=4.8 Score=21.12 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
.+..+.|++||-+-++ .|+- .+|+..|.-. -+-.|+.+|..+. + ...+..|+...
T Consensus 180 ~~~vIaD~GCGEakiA---~~~~-~kV~SfDL~a----------------~~~~V~~cDm~~v-P-l~d~svDvaV~--- 234 (325)
T KOG3045 180 KNIVIADFGCGEAKIA---SSER-HKVHSFDLVA----------------VNERVIACDMRNV-P-LEDESVDVAVF--- 234 (325)
T ss_pred CCEEEEECCCCHHHHH---HCCC-CCEEEEEEEC----------------CCCCEEECCCCCC-C-CCCCCCCEEEE---
T ss_conf 7647885366423332---0466-6504663002----------------7885353224478-6-76675447875---
Q ss_pred HHHCC-HHHHHHHHH-HCCCCCCCEEEEEEC-CCCC-CCC-----C-CCCCEEEEEEECCCEEEEEEECC
Q ss_conf 31000-288898887-448888974999981-7788-867-----5-78857999834185699986507
Q gi|254780405|r 128 YGQGL-AQQALAIID-KEGWLEPNALVIIEE-YAGT-CIS-----V-GAAFHFLQERKYGDTKIYFFSYN 187 (189)
Q Consensus 128 Y~~~~-~~~~l~~l~-~~~~L~~~gliiiE~-~~~~-~~~-----~-~~~~~~~~~k~yG~t~i~f~~~n 187 (189)
...+ ...+.+.+. .+.+|+++|+++|-. .+.. +.. + .-+|+. +.+.--+.++++|.+.
T Consensus 235 -CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~-~~~d~~n~~F~lfefk 302 (325)
T KOG3045 235 -CLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV-KHKDVSNKYFTLFEFK 302 (325)
T ss_pred -EHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCEE-EEHHHHCCEEEEEEEE
T ss_conf -2755343389999999887335866999860221340889999998728702-2110000418989973
No 361
>PRK12939 short chain dehydrogenase; Provisional
Probab=62.19 E-value=3.2 Score=22.15 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
..++|+.+|=-++++|. ++...++.|| +|+..+.+.+.++-+.+-++..+ .++..+.+|+.+
T Consensus 3 ~~L~~KvalVTGgs~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~ 67 (250)
T PRK12939 3 SSLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLAD 67 (250)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC--CEEEEEEECCCC
T ss_conf 999998799958366899999999998799-99999698899999999999559--909999924899
No 362
>PRK05650 short chain dehydrogenase; Provisional
Probab=61.69 E-value=2.5 Score=22.77 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=43.1
Q ss_pred EEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--CCCCCC
Q ss_conf 7861100122---2100110168733011100012356676420013322100223445665------4210--034444
Q gi|254780405|r 51 RMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI--GNISPF 119 (189)
Q Consensus 51 ~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~--~~~~~f 119 (189)
+||=-+|+|| +++.+.+.+|+ +|+.+|.+.+.++-+.+-+...+. ++.++.+|+.+ +.+. ....+.
T Consensus 2 rVlITGassGIG~alA~~la~~G~-~V~l~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~~~~~~~~v~~~~g~i 78 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKELREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 799988764999999999998899-899997988999999999984499--28999845899999999999999983997
Q ss_pred CCCCCCH
Q ss_conf 3101513
Q gi|254780405|r 120 QLVYLDP 126 (189)
Q Consensus 120 DiIf~DP 126 (189)
|+++-+.
T Consensus 79 DiLVNNA 85 (270)
T PRK05650 79 DVIVNNA 85 (270)
T ss_pred CEEEECC
T ss_conf 7896247
No 363
>PRK08339 short chain dehydrogenase; Provisional
Probab=61.40 E-value=3.3 Score=22.11 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 455896786110012221001----101687330111000123566764200133221002234456
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
.+++|+.+|=-++++|. |.+ .+..|| +|+.++.+.+.++-+.+.+.... ..++..+.+|+
T Consensus 4 l~L~gK~alITG~s~GI-G~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~~-~~~~~~~~~D~ 67 (263)
T PRK08339 4 IDLSGKLAFTTASSKGI-GFGVARVLARAGA-DVIILSRNEENLKRAKEKIKSES-DVEVHYIVADL 67 (263)
T ss_pred CCCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 17899989991626099-9999999998699-99999798899999999998504-98579998489
No 364
>PRK05872 short chain dehydrogenase; Provisional
Probab=61.12 E-value=3.1 Score=22.27 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100012356676420
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~ 91 (189)
.+++|+.+|=-+|++|. ++.+.+.+|| +|+.++.+.+.++-+.+-+
T Consensus 5 ~~L~gKvalITGassGIG~aiA~~la~~Ga-~Vvl~dr~~~~l~~~~~~l 53 (296)
T PRK05872 5 TSLDGKVVFVTGAARGVGAELARRLHARGA-KVALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
T ss_conf 885998799927105899999999998799-8999989999999999983
No 365
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=60.36 E-value=5.5 Score=20.79 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=44.9
Q ss_pred CEEEEEEEE-CCEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-------CCCCHHH-HHCCCCC
Q ss_conf 019986410-88674437888-867785899999998776333645589678611001-------2221001-1016873
Q gi|254780405|r 3 KIRIIGGKF-QRRLLHTPQNR-SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAG-------TGSVGFE-ALSRGCH 72 (189)
Q Consensus 3 ~mrii~G~~-kg~~l~~~~~~-~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaG-------sG~lgiE-alSrGA~ 72 (189)
=|||+|||| ||.+++-+... .+|=... ..+| .. +-.++=..||| .|++.|. ....|-.
T Consensus 316 FlRV~SGKyEK~M~~k~~R~gK~V~~S~~---~~~~---A~------~R~~v~~AYaGD~iGL~N~G~~~IGDT~~~GE~ 383 (530)
T TIGR00503 316 FLRVVSGKYEKGMKLKHVRTGKDVVLSDA---LTLM---AG------DREHVEEAYAGDIIGLHNHGTIQIGDTFTQGEK 383 (530)
T ss_pred EEEEECCEEECCCEECCCCCCCEEEECCH---HHHH---HC------CHHHHHHCCCCCEEEECCCCCEEECCCCCCCCE
T ss_conf 77764134634756614213553686323---5654---40------212231127776531068842674772024865
Q ss_pred -------------CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf -------------301110001235667642001332210022344
Q gi|254780405|r 73 -------------YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105 (189)
Q Consensus 73 -------------~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~ 105 (189)
....=-.||.-.+.+++=+..+.-+.-++|++.
T Consensus 384 ~~f~gIP~F~PELF~~~R~~DP~~~K~l~KG~~~L~EEGAVQv~~~ 429 (530)
T TIGR00503 384 LKFTGIPNFAPELFRRLRLKDPLKQKQLLKGLVQLSEEGAVQVLRP 429 (530)
T ss_pred EEECCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHCCCCCHHHHHHH
T ss_conf 6638778866789998621383455665504100022643232311
No 366
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=60.27 E-value=3.4 Score=21.99 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 55896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-++++| +|.+ .+.+|| +|+.++.+++.++.+.+.+. .++..+.+|+.
T Consensus 3 ~L~gK~alVTGas~G-IG~aia~~l~~~Ga-~V~~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~ 62 (263)
T PRK06200 3 WLTGQVALITGGGSG-IGRALVERFLAEGA-RVAVLERSAEKCASLRQRFG-----DDVLVVEGDVT 62 (263)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC-----CCEEEEECCCC
T ss_conf 717288999586679-99999999998799-99999799999999999818-----86468717999
No 367
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=59.70 E-value=3.3 Score=22.08 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCCCCEEEECCCC-CCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5589678611001-22210011016-87330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAG-TGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaG-sG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.+.+++|+=+++| -|+...|+|.| |..+.+.||.|.-....+.+.+-
T Consensus 8 kl~~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v~~SNLnRQ~~ 56 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIH 56 (231)
T ss_pred HHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHC
T ss_conf 9854978998886368999999998099759997199904544443301
No 368
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=59.40 E-value=6.4 Score=20.40 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf 012221001---10168733011100012356676420013-32210022344566542100344443101513431000
Q gi|254780405|r 57 AGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELL-GVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 57 aGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~-~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
-|.|++|.- .|++.-..|+++...+ .++.+++|=-.+ ....+..+....... ......++|+||+-=. ...
T Consensus 4 iGaGaiG~~~a~~L~~ag~~V~lv~R~~-~~~~i~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~viv~vK--a~~ 78 (150)
T pfam02558 4 LGAGAVGSLYGARLARAGHDVTLIARGR-HLEAIRENGLRITSPGGERTVPPPVATS--ASEELGPADLVIVAVK--AYQ 78 (150)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEECCC-HHHHHHHCCEEEEECCCCEEEECCEECC--CHHHCCCCCEEEEEEC--CCC
T ss_conf 9668999999999997799289997563-6788774976999479838980741038--6576588679999722--458
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 2888988874488889749999
Q gi|254780405|r 133 AQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 133 ~~~~l~~l~~~~~L~~~gliii 154 (189)
....++.+.. ++++++.+++
T Consensus 79 ~~~al~~l~~--~l~~~t~iv~ 98 (150)
T pfam02558 79 TAEALEDLAP--LLGPNTVVLL 98 (150)
T ss_pred HHHHHHHHHH--HCCCCCEEEE
T ss_conf 8999999886--5288838999
No 369
>PRK08265 short chain dehydrogenase; Provisional
Probab=58.83 E-value=4.2 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. +....+..|| +|+..+.+.+..+.+.+.+ + .++..+++|+.
T Consensus 3 ~L~gKvalVTGgs~GIG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~ 62 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-CVAILDIDADNGAAVAASL---G--ERARFIATDIT 62 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---C--CCEEEEECCCC
T ss_conf 99999899948776899999999998799-8999979889999999981---9--97289981389
No 370
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=58.48 E-value=8.4 Score=19.68 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCCEEEECCC-CCCCCHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8967861100-12221001101-687330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 48 DSTRMLNIFA-GTGSVGFEALS-RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 48 ~~~~vlDlfa-GsG~lgiEalS-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.|.+++=.++ |.|.+++.-+. .|| +|++++.+.+-.+.+++ ++.+.-+..-..|..+-.+ +.||+|+--
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~----lGAd~~i~~~~~~~~~~~~----~~~d~ii~t 236 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKK----LGADHVINSSDSDALEAVK----EIADAIIDT 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----HCCCEEEECCCCHHHHHHH----HHCCEEEEC
T ss_conf 99899998774899999999998699-69999578779999998----4882899767811667767----347399998
Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 34310002888988874488889749999
Q gi|254780405|r 126 PPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 126 PPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
-| .......+. .|+.+|.+++
T Consensus 237 v~--~~~~~~~l~------~l~~~G~~v~ 257 (339)
T COG1064 237 VG--PATLEPSLK------ALRRGGTLVL 257 (339)
T ss_pred CC--HHHHHHHHH------HHHCCCEEEE
T ss_conf 77--455999999------8642978999
No 371
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.33 E-value=3.8 Score=21.72 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=37.7
Q ss_pred CCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 589678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
++|+.+|=-+|++| +|. +.+..|| +|+..+.+.+.++-+.+-++..+. ++..+.+|+.
T Consensus 2 L~gK~alITGas~G-IG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~ 63 (258)
T PRK12429 2 LKGKTALVTGAASG-IGLEIALALAKEGA-KVVIADLNDEAAAKAAEAIKKAGG--KAIGVAMDVT 63 (258)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 89598999488758-99999999998799-999997988999999999984499--1899983589
No 372
>PRK07831 short chain dehydrogenase; Provisional
Probab=57.48 E-value=3.9 Score=21.64 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=34.9
Q ss_pred CCCCCEEEECCCC-CC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001-22---210011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAG-TG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaG-sG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+++|=-+++ +| +++...+..|| +|+.+|.+.+.+.-+.+.+....-..++..+.+|+.
T Consensus 13 ~L~gKvalVTGgsg~GIG~a~a~~la~~Ga-~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt 78 (261)
T PRK07831 13 LLAGKVVVVTAAAGTGIGSATARRALEEGA-DVVISDIHERRLGETADELAAELGLGRVEGVVCDVT 78 (261)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 469984999499964789999999998799-899980877778999999998438772899975689
No 373
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=57.14 E-value=17 Score=17.82 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=49.8
Q ss_pred CCCEEEECCCCCCCCHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHCCCCCCCCC
Q ss_conf 89678611001222100110----16873301110001235667642001332210022344566542-10034444310
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEAL----SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLG-KIGNISPFQLV 122 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEal----SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~-~~~~~~~fDiI 122 (189)
.+.++| ..+|+|.+|.-|+ ..|| +|+.+.-+.+..+.+++ ++...-+..-..|+.+.+ +......+|+|
T Consensus 140 ~g~~vL-i~gaaGgVG~~avQlAk~~Ga-~Vi~t~~s~~k~e~~~~----lGA~~vi~~~~~~~~~~i~~~t~g~gvdvv 213 (327)
T PRK10754 140 PDEQFL-FHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRALK----AGAWQVINYREENIVERVKEITGGKKVRVV 213 (327)
T ss_pred CCCEEE-EECCCCCCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 999999-981776112689999998699-99999898999999996----699999989999999999998689983699
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
| |+- +....+..++ .++++|.++.
T Consensus 214 ~-D~v-G~~~~~~~~~------~l~~~G~iv~ 237 (327)
T PRK10754 214 Y-DSV-GKDTWEASLD------CLQRRGLMVS 237 (327)
T ss_pred E-ECC-CHHHHHHHHH------HHHCCCEEEE
T ss_conf 9-898-8899999999------8634989999
No 374
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=56.97 E-value=4.1 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 30111000123566764200133
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLG 95 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~ 95 (189)
++..||-|+...+.+...++..+
T Consensus 4 kILlVEDD~~l~~~l~~~L~~~g 26 (224)
T PRK10766 4 HILVVEDEPVTRARLQGYFEQEG 26 (224)
T ss_pred EEEEECCCHHHHHHHHHHHHHCC
T ss_conf 19999199999999999999879
No 375
>PRK07832 short chain dehydrogenase; Provisional
Probab=56.45 E-value=3.8 Score=21.73 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=41.8
Q ss_pred EEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--CCCCCC
Q ss_conf 7861100122---2100110168733011100012356676420013322100223445665------4210--034444
Q gi|254780405|r 51 RMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI--GNISPF 119 (189)
Q Consensus 51 ~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~--~~~~~f 119 (189)
++|=-+|+|| +++.+.+++|| +|+.++.|.+.++-+.+.++..+.+ .+..+..|+.+ +.+. ....+.
T Consensus 2 ~alITGassGIG~a~A~~la~~Ga-~v~l~~r~~~~l~~~~~~l~~~g~~-~~~~~~~Dvsd~~~v~~~~~~~~~~~g~i 79 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHPSM 79 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 799947201999999999998899-8999989889999999999845897-14788566899999999999999972998
Q ss_pred CCCCCCH
Q ss_conf 3101513
Q gi|254780405|r 120 QLVYLDP 126 (189)
Q Consensus 120 DiIf~DP 126 (189)
|+++-+.
T Consensus 80 DiLiNNA 86 (272)
T PRK07832 80 DVVMNIA 86 (272)
T ss_pred CEEEECC
T ss_conf 8899878
No 376
>PRK06114 short chain dehydrogenase; Provisional
Probab=56.42 E-value=4.6 Score=21.26 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=36.7
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---100110168733011100-01235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDN-NSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~-~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++|. ++...+..|| +|+.++. +.+..+...+-++..+. ++..+.+|+.
T Consensus 12 f~L~gKvalVTGa~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt 76 (262)
T PRK06114 12 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGR--RAIQIAADVT 76 (262)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 498999899968478999999999998799-8999958974699999999996599--5899981689
No 377
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=56.04 E-value=2.9 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=12.7
Q ss_pred CHHHHHCCCCCCHHHHHHHHH
Q ss_conf 100110168733011100012
Q gi|254780405|r 62 VGFEALSRGCHYVLFVDNNSE 82 (189)
Q Consensus 62 lgiEalSrGA~~v~~vE~~~~ 82 (189)
++..+..+| .+|..+|.|++
T Consensus 20 la~~~a~~g-~~vl~iD~DpQ 39 (104)
T cd02042 20 LAAALARRG-KRVLLIDLDPQ 39 (104)
T ss_pred HHHHHHHCC-CEEEEEECCCC
T ss_conf 999999779-92999977988
No 378
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=55.98 E-value=4.3 Score=21.41 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHCCHHHHHHHHHHC
Q ss_conf 301110001235667642001332210022344566542100344443101513--43100028889888744
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP--PYGQGLAQQALAIIDKE 143 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP--PY~~~~~~~~l~~l~~~ 143 (189)
+|.-||=|+-..+++++-++.+|++ +. ...|..+.++.....+||+||+|= |--++ -++...|.+.
T Consensus 826 rILVVEDNpINq~VL~~~L~~LG~~--V~-~A~NG~EALe~l~~~~fDLILMDIqMPvMDG--yEaTr~IRe~ 893 (947)
T PRK10841 826 MILVVDDHPINRRLLADQLGSLGYQ--CK-TANDGVDALNVLSKNHIDIVLSDVNMPNMDG--YRLTQRIRQL 893 (947)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHHCC
T ss_conf 8999907899999999999976999--99-9899999999975699898997088899809--9999999808
No 379
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=55.85 E-value=4.5 Score=21.31 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8967861100122210011----01687330111000123566764
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
.|..+.=. |.|.+|+.| .+-||.++++||.+++..+++++
T Consensus 185 ~G~tvaV~--GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVF--GLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCEEEEE--ECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 99848999--042766999998987488549999377789999986
No 380
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=55.56 E-value=14 Score=18.35 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCHHHHHC-CC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHCCHHHH
Q ss_conf 221001101-68-733011100012356676420013322100223445665421003444431015-134310002888
Q gi|254780405|r 60 GSVGFEALS-RG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL-DPPYGQGLAQQA 136 (189)
Q Consensus 60 G~lgiEalS-rG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~-DPPY~~~~~~~~ 136 (189)
||++. ||. +| +.+|+.+|.|+++++.+++. +.-+.+ ..+..+. ...+|+|++ -|| ..+.++
T Consensus 19 gSlA~-alk~~~~~~~I~g~d~~~~~l~~A~~~----g~id~~---~~~~~e~-----~~~~DlIilatPv---~~~~~v 82 (307)
T PRK07502 19 SSLAR-AIRRQGLAGEIVGAARSAETRARAREL----GLGDRV---TTSAAEA-----VKGADLVILCVPV---GASGAV 82 (307)
T ss_pred HHHHH-HHHHCCCCCEEEEEECCHHHHHHHHHC----CCCCHH---CCCHHHH-----HCCCCEEEEECCH---HHHHHH
T ss_conf 99999-998549985799984999999999986----997511---2777664-----0458979991789---999999
Q ss_pred HHHHHHCCCCCCCEEEE
Q ss_conf 98887448888974999
Q gi|254780405|r 137 LAIIDKEGWLEPNALVI 153 (189)
Q Consensus 137 l~~l~~~~~L~~~glii 153 (189)
++.+.. .++++++|.
T Consensus 83 l~~l~~--~l~~~~ivT 97 (307)
T PRK07502 83 AAEIAP--HLKPGAIVT 97 (307)
T ss_pred HHHHHH--HCCCCCEEE
T ss_conf 999985--558996899
No 381
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=55.35 E-value=5.1 Score=20.97 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCCEEEECCCCCCCCHHH---HHCC------CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 896786110012221001---1016------87330111000123566764200
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE---ALSR------GCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE---alSr------GA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
..-+++++++|+|.|..- ++.+ .+-+.+.||.++...+.-+++++
T Consensus 17 ~~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~ 70 (240)
T pfam02636 17 PPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLA 70 (240)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf 970899979971899999999998759465753469998089999999999752
No 382
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=55.18 E-value=3.9 Score=21.68 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=7.1
Q ss_pred CEEEECCCCCCCC
Q ss_conf 6786110012221
Q gi|254780405|r 50 TRMLNIFAGTGSV 62 (189)
Q Consensus 50 ~~vlDlfaGsG~l 62 (189)
++++.+++..++-
T Consensus 45 ~~i~~I~~~k~~~ 57 (202)
T cd04708 45 CQVLEIVVEKESK 57 (202)
T ss_pred EEEEEEECCCCCC
T ss_conf 7888997257678
No 383
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=54.89 E-value=13 Score=18.55 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=32.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89678611001222100110168733011100012356676
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIR 88 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk 88 (189)
...+||=-+||.|-++.|...+|. .|.++|.+--.+-+-+
T Consensus 57 ~~~~VLVPGaGLGRLa~Eia~~G~-~~~gNE~S~~Mllas~ 96 (268)
T pfam07942 57 SKIRILVPGAGLGRLAYELATLGY-QVQGNEFSYFMLLCSN 96 (268)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCC-EEEEECCCHHHHHHHH
T ss_conf 782899769880378999872564-6887212199999999
No 384
>pfam07669 Eco57I Eco57I restriction endonuclease. Homologues of the Escherichia coli Eco57I restriction endonuclease are found in several phylogenetically diverse bacteria.
Probab=54.83 E-value=3.6 Score=21.84 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=11.1
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 4431015134310
Q gi|254780405|r 118 PFQLVYLDPPYGQ 130 (189)
Q Consensus 118 ~fDiIf~DPPY~~ 130 (189)
+||+|.-+|||..
T Consensus 2 KFDvVIGNPPY~~ 14 (106)
T pfam07669 2 KFDVVIGNPPYQE 14 (106)
T ss_pred CCCEEEECCCCCC
T ss_conf 7588970899943
No 385
>KOG0780 consensus
Probab=54.79 E-value=18 Score=17.76 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCCCCHHHHH---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----HHHCCCCCCCCCCCCHHHHHCCHHHHHHHH-
Q ss_conf 6873301110---00123566764200133221002234456654----210034444310151343100028889888-
Q gi|254780405|r 69 RGCHYVLFVD---NNSESIRLIRRNSELLGVEKNCNIFFRDVLRL----GKIGNISPFQLVYLDPPYGQGLAQQALAII- 140 (189)
Q Consensus 69 rGA~~v~~vE---~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~----~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l- 140 (189)
+|- ++..|= .-..|+.-+++|+.+.+++-....-..|..+. .+..+.+.||+|.+|--=.......+++-+
T Consensus 128 kG~-K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~ 206 (483)
T KOG0780 128 KGY-KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMK 206 (483)
T ss_pred CCC-CEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 687-2457760224530689999876740770684036655589999999988863972899827873012489999999
Q ss_pred HHCCCCCCCEEEEE
Q ss_conf 74488889749999
Q gi|254780405|r 141 DKEGWLEPNALVII 154 (189)
Q Consensus 141 ~~~~~L~~~gliii 154 (189)
.-.+.++|+-+|.+
T Consensus 207 ~v~~ai~Pd~vi~V 220 (483)
T KOG0780 207 QVSKAIKPDEIIFV 220 (483)
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99851598738999
No 386
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=53.95 E-value=12 Score=18.67 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH
Q ss_conf 12221001---1016873301110001235667642001-3322100223445665421003444431015134310002
Q gi|254780405|r 58 GTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSEL-LGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLA 133 (189)
Q Consensus 58 GsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~-~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~ 133 (189)
|.|++|-- .|++.-..|+++..+++.++.++++-.. ....+....+.-.+. ......++|+|++=- .....
T Consensus 9 GaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~---~~~~~~~~D~vivav--K~~~~ 83 (305)
T PRK05708 9 GAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAE---TADAPEPIHRLLVAC--KAYDA 83 (305)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCC---CCCCCCCCCEEEEEE--CCCCH
T ss_conf 8239999999999848997399994789999999789989986895578740465---766578877899980--42568
Q ss_pred HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 888988874488889749999
Q gi|254780405|r 134 QQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 134 ~~~l~~l~~~~~L~~~gliii 154 (189)
+..++.+.. .+.+++.|+.
T Consensus 84 ~~a~~~l~~--~l~~~t~Iv~ 102 (305)
T PRK05708 84 EPAVASLAH--RLAPGAELLL 102 (305)
T ss_pred HHHHHHHHH--HCCCCCEEEE
T ss_conf 999999886--4499958999
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=53.31 E-value=16 Score=17.97 Aligned_cols=82 Identities=10% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHH---HHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHH
Q ss_conf 1687330111000---12356676420013322--------100223445665421003444431015134310002888
Q gi|254780405|r 68 SRGCHYVLFVDNN---SESIRLIRRNSELLGVE--------KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQA 136 (189)
Q Consensus 68 SrGA~~v~~vE~~---~~a~~~lk~N~~~~~~~--------~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~ 136 (189)
-||.+- ..|=.| .-|++-||+|+.+.+.+ |.++| |.+=++.-+.++||||.+|===....-+.+
T Consensus 147 ~rGfK~-~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVki----A~EGv~~Fk~E~~diIivDTSGRHkQe~~L 221 (453)
T TIGR01425 147 RRGFKP-ALVCADTFRAGAFDQLKQNATKAKIPFYGSYLESDPVKI----ASEGVEKFKKEKFDIIIVDTSGRHKQEEEL 221 (453)
T ss_pred CCCCCE-EEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE----ECCCHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf 266432-565177542324899987476448971201048987078----002011322127847998379873225888
Q ss_pred HH-HHHHCCCCCCCEEEEE
Q ss_conf 98-8874488889749999
Q gi|254780405|r 137 LA-IIDKEGWLEPNALVII 154 (189)
Q Consensus 137 l~-~l~~~~~L~~~gliii 154 (189)
++ ...-...++|+.+|++
T Consensus 222 F~Em~qv~~Ai~Pd~iifV 240 (453)
T TIGR01425 222 FEEMVQVAEAIKPDSIIFV 240 (453)
T ss_pred HHHHHHHHHCCCCCCEEEE
T ss_conf 8998768633499836998
No 388
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=52.95 E-value=6.4 Score=20.39 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=30.5
Q ss_pred CHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHCCCCC-CCCHHHHHHH----HHHHHHHCCCCCCCCCCCCHH
Q ss_conf 1001101687330111000123--5667642001332-2100223445----665421003444431015134
Q gi|254780405|r 62 VGFEALSRGCHYVLFVDNNSES--IRLIRRNSELLGV-EKNCNIFFRD----VLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 62 lgiEalSrGA~~v~~vE~~~~a--~~~lk~N~~~~~~-~~~~~ii~~D----~~~~~~~~~~~~fDiIf~DPP 127 (189)
++-++..+|. +|..+|.|++. ..|.+. ...-+. .....++..+ .....+......||+|++|-|
T Consensus 22 la~~~~~~g~-~v~~iD~Dpq~s~~~W~e~-a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~~D~VIIDtp 92 (231)
T PRK13849 22 LCAALASDGK-RVALFEADENRPLTRWKEN-ALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADTH 92 (231)
T ss_pred HHHHHHHCCC-EEEEEECCCCCCHHHHHHH-HHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999997899-5999968998688999987-652589887752340565257899998875369988998189
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=52.75 E-value=5.2 Score=20.94 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=37.9
Q ss_pred CCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 47 LDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
++|+.+|=-+|++|. ++...+.+|| +|+.++.+.+.++-+.+.+.. .++..+.+|+.
T Consensus 3 ~~GKvalITGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~----~~~~~~~~Dv~ 62 (235)
T PRK07326 3 GNGKAALVTGGSKGIGFAVAEALAAAGY-RVAICARDESELEAAAQELGK----RNVLGLACDVR 62 (235)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC----CCEEEEEEECC
T ss_conf 9998999938267999999999998799-999998988999999998423----98699996389
No 390
>KOG3924 consensus
Probab=52.39 E-value=5.1 Score=20.99 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCEEEECCCCCCCCHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CC-CCCHHHHHHHHHHHHH-HCCCC
Q ss_conf 89678611001222100-110168733011100012356676420013-------32-2100223445665421-00344
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGF-EALSRGCHYVLFVDNNSESIRLIRRNSELL-------GV-EKNCNIFFRDVLRLGK-IGNIS 117 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgi-EalSrGA~~v~~vE~~~~a~~~lk~N~~~~-------~~-~~~~~ii~~D~~~~~~-~~~~~ 117 (189)
.+-.|.||++|.|.+-. -|++-|+++-+++|+.....+++..|.+.+ |. .+.++.++++...-.. .....
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~ 271 (419)
T KOG3924 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQT 271 (419)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH
T ss_conf 88723477765102367888753400103405415847889999999999999847786721403635478888998863
Q ss_pred CCCCCCCC
Q ss_conf 44310151
Q gi|254780405|r 118 PFQLVYLD 125 (189)
Q Consensus 118 ~fDiIf~D 125 (189)
..++||++
T Consensus 272 eatvi~vN 279 (419)
T KOG3924 272 EATVIFVN 279 (419)
T ss_pred CCEEEEEE
T ss_conf 05288870
No 391
>CHL00148 orf27 Ycf27; Reviewed
Probab=52.20 E-value=4.9 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 012221001101687330111000
Q gi|254780405|r 57 AGTGSVGFEALSRGCHYVLFVDNN 80 (189)
Q Consensus 57 aGsG~lgiEalSrGA~~v~~vE~~ 80 (189)
|.+|.-+++++....-.++.+|..
T Consensus 36 a~~g~~a~~~~~~~~~DlviLDi~ 59 (240)
T CHL00148 36 ASDGEEALKLFHQEQPDLVILDVM 59 (240)
T ss_pred ECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 899999999997479999999799
No 392
>PRK07063 short chain dehydrogenase; Provisional
Probab=52.12 E-value=5.3 Score=20.85 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222100----1101687330111000123566764200-1332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSE-LLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~-~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-++++| +|. ..+..|| +|+..+.+.+..+-..+.+. ..+ .++..+.+|+.
T Consensus 4 rL~gKvalVTGa~~G-IG~aiA~~~a~~Ga-~V~i~~~~~~~~~~~~~~l~~~~g--~~~~~~~~Dvt 67 (259)
T PRK07063 4 RLAGKVALVTGAAQG-IGAAIARAFVREGA-AVALADLDAALAERAAAAIARQTG--ARVLALPADVT 67 (259)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCC--CEEEEEECCCC
T ss_conf 359988999587878-99999999998799-899997987899999999988509--91899983689
No 393
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=51.95 E-value=6.7 Score=20.27 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred CEEEECCCCCCCCH--HHH---HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC---------
Q ss_conf 67861100122210--011---0168733011100012356676420013322100223445665421003---------
Q gi|254780405|r 50 TRMLNIFAGTGSVG--FEA---LSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGN--------- 115 (189)
Q Consensus 50 ~~vlDlfaGsG~lg--iEa---lSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~--------- 115 (189)
..||||+||--.-+ =|. ..-.| +|+.||+|+-++.-.+.-+.... +..+.++++|+.+--....
T Consensus 71 rQFLDlGsGlPT~~nvHeVAq~~~P~a-RVVYVD~DPvvlaHaraLL~~~~-~~~t~~v~aDlrdp~~iL~~p~~~~~lD 148 (268)
T pfam04672 71 RQFLDIGTGLPTEPNVHQVAQRVAPES-RVVYVDNDPIVLTHARALLTSTP-EGATDYIHADVRDPEEILEHPEARRTLD 148 (268)
T ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCC-EEEEECCCCHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHCCHHHHHHCC
T ss_conf 057760569999997214667329986-39998898279999999956898-7746999777779899865987885378
Q ss_pred -CCCCCCCCCCH-HH--HHCCHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf -44443101513-43--1000288898887448888974999981778
Q gi|254780405|r 116 -ISPFQLVYLDP-PY--GQGLAQQALAIIDKEGWLEPNALVIIEEYAG 159 (189)
Q Consensus 116 -~~~fDiIf~DP-PY--~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 159 (189)
.++.-++++.= +| .......++..+. ..|.+|+.+++-|...
T Consensus 149 ~~rPValll~~vLh~v~D~~~p~~iv~~l~--d~l~pGS~L~ish~t~ 194 (268)
T pfam04672 149 FDRPVALSLVAILHFVPDDDDPYGIVRRLM--DALPAGSYLVLSHGTS 194 (268)
T ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHHHH--HHCCCCCEEEEEECCC
T ss_conf 788613453344345786104999999999--7269976599984358
No 394
>PRK12746 short chain dehydrogenase; Provisional
Probab=51.52 E-value=6.6 Score=20.29 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.++=-++.+|. +..+.+.+||.-++.++.+.+..+-+.+.++..+ .++.++.+|+.
T Consensus 3 ~l~gKvalITGga~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~ 66 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNG--GKAFLIEADLN 66 (254)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCC
T ss_conf 99998899948476899999999998799999965999899999999998559--92899975779
No 395
>PRK07825 short chain dehydrogenase; Provisional
Probab=50.96 E-value=9.9 Score=19.26 Aligned_cols=46 Identities=11% Similarity=-0.054 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5589678611001222---1001101687330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
+++|+.++=-+|++|. ++.+.+.+|| +|+..+.+.+.++.+.+.+.
T Consensus 2 dl~gKvvlITGassGIG~a~A~~la~~Ga-~V~i~~r~~~~l~~~~~~~~ 50 (273)
T PRK07825 2 NLRGKVIAITGGARGIGLATARALAALGA-KVAIGDLDEALAKESAAELG 50 (273)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC
T ss_conf 99998899926233999999999998799-89999799999999998607
No 396
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=50.86 E-value=9.9 Score=19.25 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHH
Q ss_conf 99999877633364558967861100122210011016873301110
Q gi|254780405|r 32 KKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVD 78 (189)
Q Consensus 32 realFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE 78 (189)
|..+-..|... ..+.-||--.|.=+ +.++.+++.-+.+.|
T Consensus 51 K~~v~~~Lt~~-----ASaILlDpeyg~pa--~~~~~~~~GLlla~E 90 (324)
T PRK12399 51 KVLVSEELTPY-----ASSILLDPEYGLPA--SKARDEEAGLLLAYE 90 (324)
T ss_pred HHHHHHHHHHH-----CCEEEECCCCCCCH--HHHCCCCCCEEEEEC
T ss_conf 99999987653-----23466574437611--320288886389960
No 397
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=50.24 E-value=9 Score=19.50 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=36.2
Q ss_pred ECCEEEECCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHH
Q ss_conf 08867443788886778-5899999998776333645589678611001222100110168733011
Q gi|254780405|r 11 FQRRLLHTPQNRSIRPS-DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLF 76 (189)
Q Consensus 11 ~kg~~l~~~~~~~~RPt-~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~ 76 (189)
..|-++.+|-+.+.=|- .+.--+.|-.++.... ..-.=-.+||.+||.+|+|-..|+|+.-...|
T Consensus 80 ~eg~~~~FPGGGT~F~~Ga~~Yid~i~~~ip~~~-~~~~vRt~LDvGCGVASfGayLl~r~vltMS~ 145 (506)
T pfam03141 80 VEGDKFRFPGGGTQFPHGADAYIDFLAQVIPLIA-WGGRVRTALDVGCGVASFGAYLLSRDVLTMSF 145 (506)
T ss_pred EECCEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCEEEEEECCCCEECHHHHHHCCCCEEEEE
T ss_conf 6398999479987676679999999998567555-79856899976887210377763278458873
No 398
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.78 E-value=6.3 Score=20.43 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=33.5
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 45589678611001222---1001101687330111000123566764200
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.+++|+++|=-++++|. ++...+..|| +|+.++.+++.++.+.+-+.
T Consensus 7 ~~L~GKvalVTGgs~GIG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~ 56 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLP 56 (264)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC
T ss_conf 689999799947376899999999998799-89999799899999999747
No 399
>PRK13557 histidine kinase; Provisional
Probab=49.72 E-value=6.6 Score=20.31 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCC--HHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 330111000123566764200133221002234456654210034-444310151--34310002888988874488889
Q gi|254780405|r 72 HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNI-SPFQLVYLD--PPYGQGLAQQALAIIDKEGWLEP 148 (189)
Q Consensus 72 ~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~-~~fDiIf~D--PPY~~~~~~~~l~~l~~~~~L~~ 148 (189)
.+|..||=++....++++-++.+|+. + ....|..+.++.... .+||+|++| -| +.-...++...+.+ ..|
T Consensus 414 ~~ILvVDD~~~~r~~~~~~L~~~G~~--v-~~a~~G~eAl~~l~~~~~~Dlvl~D~~MP-g~mdG~el~r~ir~---~~p 486 (538)
T PRK13557 414 ETILIVDDRPDVAELARMILEDFGYR--T-LVASNGREALEILESHPEVDLLFTDLIMP-GGMNGVMLAREARR---RQP 486 (538)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCCEEEECCCCC-CCCCHHHHHHHHHH---HCC
T ss_conf 25899679899999999999976999--9-99899999999996099988998877799-99889999999985---389
Q ss_pred CEEEEE
Q ss_conf 749999
Q gi|254780405|r 149 NALVII 154 (189)
Q Consensus 149 ~gliii 154 (189)
+--|++
T Consensus 487 ~i~ii~ 492 (538)
T PRK13557 487 KIKVLL 492 (538)
T ss_pred CCEEEE
T ss_conf 983999
No 400
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=49.66 E-value=13 Score=18.48 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHHHH-HH-HCC----CC---
Q ss_conf 78589999999877633364558967861100122-2100110168733011100012356676-42-001----33---
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTG-SVGFEALSRGCHYVLFVDNNSESIRLIR-RN-SEL----LG--- 95 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG-~lgiEalSrGA~~v~~vE~~~~a~~~lk-~N-~~~----~~--- 95 (189)
+.+-.++ -++.|.. -.+.+|+=--||-. =|.- .+++|. +|+.||.+..|++..- +| +.- .+
T Consensus 28 vnp~L~k--~~~~L~~-----~~~~rVfVPLCGKSlDm~W-La~qG~-~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~ 98 (226)
T PRK13256 28 PNEFLVK--HFSKLNI-----NDSSVCLIPMCGCSIDMLF-FLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYK 98 (226)
T ss_pred CCHHHHH--HHHHHCC-----CCCCEEEEECCCCHHHHHH-HHHCCC-EEEEEEHHHHHHHHHHHHCCCCCEEECCCCCE
T ss_conf 6888999--9997488-----9998699967887898999-997898-25643101899999999769984551378812
Q ss_pred --CCCCHHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf --22100223445665421-00344443101
Q gi|254780405|r 96 --VEKNCNIFFRDVLRLGK-IGNISPFQLVY 123 (189)
Q Consensus 96 --~~~~~~ii~~D~~~~~~-~~~~~~fDiIf 123 (189)
..++++++++|.+.+.+ .....+||.||
T Consensus 99 ~y~~~~I~i~~GD~F~L~~~~~~lg~~daiY 129 (226)
T PRK13256 99 LYKGDDIEIYVADIFNLPKIANNLPVFDIWY 129 (226)
T ss_pred EEECCCEEEEECCCCCCCCHHCCCCCCCEEE
T ss_conf 8851887699636215862011576403697
No 401
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=49.51 E-value=6.5 Score=20.35 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
+|..||=++-...+++.-++.+|.. +. ...|..+.+......+||+|++|=
T Consensus 527 rILvVEDn~iN~~V~~~~L~~lG~~--v~-~A~nG~eALe~~~~~~fDLILMDi 577 (779)
T PRK11091 527 NILLVEDIELNVIVARSLLEKLGNS--VD-VAMTGKDALEMFKPGEYDLVLLDI 577 (779)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHCCCCCCEEEEEC
T ss_conf 1899868899999999999975999--99-989999999985069999899828
No 402
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=49.33 E-value=8.1 Score=19.78 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=30.6
Q ss_pred CHHHHHCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHH----HHHHCCCCCCCCCCCCHH
Q ss_conf 1001101687330111000123--56676420013322100223445665----421003444431015134
Q gi|254780405|r 62 VGFEALSRGCHYVLFVDNNSES--IRLIRRNSELLGVEKNCNIFFRDVLR----LGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 62 lgiEalSrGA~~v~~vE~~~~a--~~~lk~N~~~~~~~~~~~ii~~D~~~----~~~~~~~~~fDiIf~DPP 127 (189)
++-+...+|. +|..+|.|++. ..|...-...-.......++..+-.. ..+......||+|++|=|
T Consensus 22 la~~~~~~g~-~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VIIDtp 92 (231)
T pfam07015 22 LCSALASDGK-RVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALADTH 92 (231)
T ss_pred HHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999996899-5999968998688999998764688887652220566015899999886579998998399
No 403
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=49.29 E-value=7.2 Score=20.09 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++.+.+..|| +|...+.+.+.++.+.+.+. +++.++.+|+.
T Consensus 3 ~l~gK~alITG~s~GIG~aia~~~a~~Ga-~V~i~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~ 62 (245)
T PRK12936 3 DLTGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELG-----ERVKIFPANLS 62 (245)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC-----CCEEEEECCCC
T ss_conf 88999899927476899999999998699-99998299999999999838-----96699991379
No 404
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=49.23 E-value=14 Score=18.37 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHCC
Q ss_conf 12221001---1016873301110001235667642-00133221002234456654-2100344443101513431000
Q gi|254780405|r 58 GTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRN-SELLGVEKNCNIFFRDVLRL-GKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 58 GsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N-~~~~~~~~~~~ii~~D~~~~-~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
|.|++|.- .|++.-..|++|.. .+..+.+++| +...+....-..+..+.... .......++|+||+-- ....
T Consensus 9 GaGAvG~~~a~~L~~aG~~V~lv~r-~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--Ka~~ 85 (341)
T PRK08229 9 GAGSIGCYLGGRLAAAGADVTLIGR-ARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLVTV--KSAA 85 (341)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEC-HHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEEEE--CCCC
T ss_conf 9679999999999858998799956-789999996790996389976896366156148865658999899970--7578
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 2888988874488889749999
Q gi|254780405|r 133 AQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 133 ~~~~l~~l~~~~~L~~~gliii 154 (189)
....++.+.. ++.+++.++.
T Consensus 86 ~~~a~~~l~~--~l~~~t~il~ 105 (341)
T PRK08229 86 TADAAAALAG--HARPGAVVVS 105 (341)
T ss_pred HHHHHHHHHH--HCCCCCEEEE
T ss_conf 8999999986--4389968999
No 405
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.11 E-value=5.7 Score=20.69 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=43.8
Q ss_pred CCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--CCCC
Q ss_conf 9678611001222---100110168733011100012356676420013322100223445665------4210--0344
Q gi|254780405|r 49 STRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI--GNIS 117 (189)
Q Consensus 49 ~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~--~~~~ 117 (189)
.+++|=.+|++|. ++.+.+.+|+ +|+.+..+.+.++-+.+-++.-....++.++..|+.+ +.+. ....
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G~-~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 99899947863999999999998799-89999898889999999998737997399997867868999999999999809
Q ss_pred CCCCCCCCH
Q ss_conf 443101513
Q gi|254780405|r 118 PFQLVYLDP 126 (189)
Q Consensus 118 ~fDiIf~DP 126 (189)
..|+++.+.
T Consensus 81 ~iD~lvnNA 89 (248)
T PRK08251 81 GLDRVIVNA 89 (248)
T ss_pred CCCEEEECC
T ss_conf 998999857
No 406
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=49.07 E-value=5.9 Score=20.60 Aligned_cols=39 Identities=28% Similarity=0.516 Sum_probs=24.3
Q ss_pred CEEEECCCCCCCCHHH---HHCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6786110012221001---1016-873301110001235667642
Q gi|254780405|r 50 TRMLNIFAGTGSVGFE---ALSR-GCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiE---alSr-GA~~v~~vE~~~~a~~~lk~N 90 (189)
++||=+ |.|++|-| .|.| |..+++.+|.|.-....+.++
T Consensus 2 skVliv--G~GglG~~~~~~La~~Gvg~i~lvD~D~ve~sNL~Rq 44 (134)
T pfam00899 2 SRVLVV--GAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQ 44 (134)
T ss_pred CEEEEE--CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCE
T ss_conf 889998--9888999999999993897499998956763222722
No 407
>PRK09422 alcohol dehydrogenase; Provisional
Probab=48.95 E-value=24 Score=17.03 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCCEEEECCCCCCCCHHHH---H-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCC
Q ss_conf 8967861100122210011---0-168733011100012356676420013322100223-4456654210034444310
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEA---L-SRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIF-FRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEa---l-SrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii-~~D~~~~~~~~~~~~fDiI 122 (189)
.|..+|=. |.|.+|+-| + ..++.+|+.+|.+++..+.+++. +.+.-+... ..|+.+..+.... .+|.+
T Consensus 162 ~G~~VlV~--GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~l----Gad~vi~~~~~~~~~~~~~~~~g-g~~~~ 234 (338)
T PRK09422 162 PGQWIAIY--GAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GADLTINSKRVEDVAKIIQEKTG-GAHAA 234 (338)
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CCCEEECCCCCCCHHHHHHHHCC-CCCEE
T ss_conf 99889996--8868999999999980898699998999999999972----99899818874349999999509-97769
Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 15134310002888988874488889749999
Q gi|254780405|r 123 YLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+.|..- .......++ .++++|.++.
T Consensus 235 v~~~~~-~~~~~~~~~------~l~~gG~~v~ 259 (338)
T PRK09422 235 VVTAVA-KAAFNQAVD------AVRAGGRVVA 259 (338)
T ss_pred EEECCC-HHHHHHHHH------HHHCCCEEEE
T ss_conf 996787-899999999------8116999999
No 408
>PRK13856 two-component response regulator VirG; Provisional
Probab=48.85 E-value=6.5 Score=20.34 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999877633364558967861100122210011016873301110001
Q gi|254780405|r 31 TKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 31 vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
+++.+=..|+. +|-.| ..|.+|.-+++++....-.++-+|.+-
T Consensus 13 l~~~l~~~L~~------~g~~v--~~a~~~~~~~~~l~~~~~DlvIlDi~l 55 (241)
T PRK13856 13 MRHLIVEYLTI------HAFKV--TAVADSQQFNRVLSSETVDVVVVDLNL 55 (241)
T ss_pred HHHHHHHHHHH------CCCEE--EEECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999987------79999--998999999999865999999996999
No 409
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=48.84 E-value=17 Score=17.81 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=65.4
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCC-CCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 744378888677858999999987763-33645-5896786110012221001101687330111000123566764200
Q gi|254780405|r 15 LLHTPQNRSIRPSDSRTKKALFDILTH-VYPVF-LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 15 ~l~~~~~~~~RPt~~~vrealFniL~~-~~~~~-~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
+|++|...-.|. +-+.-||+--.|-. ++... -.|...+||+|-.|.-.-....|+. .|++||.-+-|.....
T Consensus 177 RLKfp~dAPSRS-tLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d---- 250 (358)
T COG2933 177 RLKFPADAPSRS-TLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD---- 250 (358)
T ss_pred CCCCCCCCCCHH-HHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCE-EEEEECCCHHHHHHHC----
T ss_conf 355887788524-5658999998658016666406786564226689862254231560-8999436222265632----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 1332210022344566542100344443101513
Q gi|254780405|r 93 LLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 93 ~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
..+++-...|.++|-+ ...+.|-..+|-
T Consensus 251 ----tg~v~h~r~DGfk~~P--~r~~idWmVCDm 278 (358)
T COG2933 251 ----TGQVTHLREDGFKFRP--TRSNIDWMVCDM 278 (358)
T ss_pred ----CCCEEEEECCCCCCCC--CCCCCCEEEEEH
T ss_conf ----6652444134730366--788775687520
No 410
>PHA02518 ParA-like protein; Provisional
Probab=48.79 E-value=8.9 Score=19.55 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=26.5
Q ss_pred HCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCHHHHH--HHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 016873301110001235--66764200133221002234--45665421003444431015134
Q gi|254780405|r 67 LSRGCHYVLFVDNNSESI--RLIRRNSELLGVEKNCNIFF--RDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 67 lSrGA~~v~~vE~~~~a~--~~lk~N~~~~~~~~~~~ii~--~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
..+| .+|..||.|++.- .++...-+. ..-+.+.. .+....++. ....||+|++|-|
T Consensus 26 a~~G-~~VlliD~DpQ~s~~~w~~~r~~~---~~~~~~~~~~~~~~~~l~~-~~~~yD~viID~p 85 (211)
T PHA02518 26 HADG-HKVLLVDLDPQGSSTDWAEAREEG---EPLIPVVRMGKSIRADLPK-VASGYDYVVVDGA 85 (211)
T ss_pred HHCC-CCEEEEECCCCCCHHHHHHHCCCC---CCCCCHHHCCHHHHHHHHH-HCCCCCEEEECCC
T ss_conf 9789-948999779996788999852268---9974012136779999997-4067888998899
No 411
>PRK08226 short chain dehydrogenase; Provisional
Probab=48.78 E-value=6.8 Score=20.24 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=36.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-++++|. ++...+..|| +|+.+|.+.++.+.+++ +...+ .++..+.+|+.
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~-~~~~g--~~~~~~~~Dvs 64 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADE-LCGRG--HRCTAVVADVR 64 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-HHHCC--CCEEEEEEECC
T ss_conf 98998899947377999999999998799-89999698799999999-98369--91799994179
No 412
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=48.64 E-value=6.3 Score=20.41 Aligned_cols=58 Identities=21% Similarity=0.074 Sum_probs=33.3
Q ss_pred CCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 49 STRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
++.+|=-++++| +|. ..+..|| +|+.++.+.+..+.+.+.+..-.-..++..+.+|+.
T Consensus 2 nKvalITG~s~G-IG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~ 63 (259)
T PRK12384 2 NKVAVVIGGGQT-LGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADAT 63 (259)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 978999468868-99999999998799-999997988999999999986248860899983279
No 413
>PRK07041 short chain dehydrogenase; Provisional
Probab=47.98 E-value=8.3 Score=19.72 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=38.3
Q ss_pred CCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 455896786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
..++|+++|=-++++|. |.+ .+..|| +|+.++.+++.++...+.+.. ..++..+..|+.
T Consensus 3 ~~l~gK~~lITGgs~GI-G~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~---~~~~~~~~~Dv~ 65 (240)
T PRK07041 3 MSLNDQKVLVVGGSSGI-GLAAARAFAARGA-DVTIASRSRERLAAAARALGG---PRPVRTAALDIT 65 (240)
T ss_pred CCCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHCC---CCCEEEEECCCC
T ss_conf 88599989995778889-9999999998799-999995988999999998478---886699984799
No 414
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=47.88 E-value=7.9 Score=19.84 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=37.0
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-++++|. ++...+..||+-++..+.+.+..+.+.+-+...+. ++..+.+|+.
T Consensus 3 ~L~gKvalVTG~s~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs 66 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGH--DVYAVQADVS 66 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 889698999172768999999999987998999769998999999999984399--5899985799
No 415
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.71 E-value=6.9 Score=20.18 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCEEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCCCC
Q ss_conf 967861100122---2100110168733011100012356676420013322100223445665421--00344443101
Q gi|254780405|r 49 STRMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGK--IGNISPFQLVY 123 (189)
Q Consensus 49 ~~~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~--~~~~~~fDiIf 123 (189)
++++|=-+|++| +++++.+.+|+ +|+....+...++-+++.++..+. .+.++..|+.+... .......|+++
T Consensus 2 gK~vLITGAssGIGraiA~~la~~G~-~Vi~~~r~~~~l~~l~~~~~~~g~--~~~~~~lDv~~~~~~~~~~~~~iDvLV 78 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-RVIAGVQIAPQVTELRAEAARRGL--ALRVEKLDLTDAIDRARAAEWDVDVLL 78 (257)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHCCCCCCEEE
T ss_conf 99899968985899999999998799-899996878999999999985299--559998988999999998089999999
Q ss_pred CCH
Q ss_conf 513
Q gi|254780405|r 124 LDP 126 (189)
Q Consensus 124 ~DP 126 (189)
.+.
T Consensus 79 NNA 81 (257)
T PRK09291 79 NNA 81 (257)
T ss_pred ECC
T ss_conf 898
No 416
>PRK08589 short chain dehydrogenase; Validated
Probab=47.48 E-value=7.1 Score=20.12 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.++|+.+|=-++++|. +....+..||+ |+..|.+.++-+.+++ ++..+ .++..+..|+.
T Consensus 3 rL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~d~~~~~~~~~~~-i~~~g--~~~~~~~~Dvs 64 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIAEAVSETVDK-IKSNG--GKAKAYHVDIS 64 (272)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHH-HHHCC--CCEEEEEECCC
T ss_conf 999798999782569999999999986999-9998382789999999-99559--94899996079
No 417
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.45 E-value=7.6 Score=19.94 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=35.4
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100-01235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDN-NSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~-~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=.++++|. +....+++||+ |+..+. +....+.+.+.++..+. ++..+.+|+.
T Consensus 2 ~L~gK~~lITGgs~GIG~aia~~la~~G~~-Vii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dlt 65 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGAN-VVLNYASSEAGAEALVAEIGALGG--KALAVQGDVA 65 (248)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 679988999489768999999999987998-999969856589999999996399--5899990389
No 418
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.19 E-value=7.1 Score=20.11 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5589678611001222100----110168733011100012356676420
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~ 91 (189)
.++|+.+|=-++++| +|. ..+..|| +|+..|.+.+..+.+.+.+
T Consensus 2 rL~gKvalVTGas~G-IG~aia~~la~~Ga-~V~i~d~~~~~~~~~~~~~ 49 (256)
T PRK07067 2 RLQGKVALLTGAASG-IGEAVAQRYLREGA-RVVLADIKPARAALAALEI 49 (256)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH
T ss_conf 989988999376778-99999999998799-9999979889999999981
No 419
>PRK11173 two-component response regulator; Provisional
Probab=46.94 E-value=16 Score=18.05 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999877633364558967861100122210011016873301110001
Q gi|254780405|r 31 TKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 31 vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
.++.+=..|.. +|-.|.. |++|.=+++.+....-.++.+|..-
T Consensus 15 ~~~~l~~~L~~------~G~~V~~--a~~~~ea~~~l~~~~~DlvilDi~l 57 (237)
T PRK11173 15 TRNTLKSIFEA------EGYDVFE--ATDGAEMHQILSENDINLVIMDINL 57 (237)
T ss_pred HHHHHHHHHHH------CCCEEEE--ECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999998------8999999--8999999999863899899993899
No 420
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.83 E-value=8.6 Score=19.64 Aligned_cols=14 Identities=7% Similarity=-0.199 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 30111000123566
Q gi|254780405|r 73 YVLFVDNNSESIRL 86 (189)
Q Consensus 73 ~v~~vE~~~~a~~~ 86 (189)
.++-+|.+.--++.
T Consensus 165 d~~VlElSSfQLe~ 178 (468)
T PRK04690 165 AYWAIELSSYQTGD 178 (468)
T ss_pred CEEEEEECCCHHHH
T ss_conf 57999943205765
No 421
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.67 E-value=8 Score=19.83 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=36.1
Q ss_pred CCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 589678611001222100----110168733011100012356676420013322100223445665
Q gi|254780405|r 47 LDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
++|+.+|=-++++| +|. +.+..||+-++....+++..+.+.+-++..+. ++..+++|+.+
T Consensus 2 L~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~d 65 (250)
T PRK08063 2 FSGKVALVTGSSRG-IGKAIALRLAKEGYDIAINYARSRKAAEETANEIEQLGR--KALVVKANVGD 65 (250)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 89498999587669-999999999988998999759998999999999995499--58999847999
No 422
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=46.26 E-value=16 Score=18.06 Aligned_cols=71 Identities=20% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHH--HCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 10001235667642001332210022344566542100344443-101513431--000288898887448888974999
Q gi|254780405|r 77 VDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQ-LVYLDPPYG--QGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 77 vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fD-iIf~DPPY~--~~~~~~~l~~l~~~~~L~~~glii 153 (189)
.+.++..++.+++|+.. +.|+.+|..+++.-......| +|.+|.|=. ++....+...|.. -+.+++.+|
T Consensus 292 ~yl~~~~YEsir~n~~R------V~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isr--ta~~gA~Vi 363 (414)
T COG5379 292 AYLDEGVYESIRQNLRR------VAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISR--TAEAGARVI 363 (414)
T ss_pred HHHCHHHHHHHHHHHHH------EEEECCCHHHHHCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHH--CCCCCCEEE
T ss_conf 21053469999855543------2321013899864687787444898244320443139999999862--157785799
Q ss_pred EE
Q ss_conf 98
Q gi|254780405|r 154 IE 155 (189)
Q Consensus 154 iE 155 (189)
+-
T Consensus 364 fR 365 (414)
T COG5379 364 FR 365 (414)
T ss_pred EE
T ss_conf 82
No 423
>PRK12828 short chain dehydrogenase; Provisional
Probab=46.03 E-value=9.2 Score=19.47 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=32.3
Q ss_pred CCCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 45589678611001222100----1101687330111000123566764200
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
..++|+.+|=-+|++| +|. ..++.|| +|+.++.+.+.++...+++.
T Consensus 3 ~~L~gKvalITGas~G-IG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~~ 52 (239)
T PRK12828 3 HSLQGKVVAITGGFGG-LGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVP 52 (239)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH
T ss_conf 9969898999472548-99999999998799-89999798778999998751
No 424
>pfam05869 Dam DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.
Probab=45.86 E-value=15 Score=18.20 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 86778589999999877633364558967861100
Q gi|254780405|r 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFA 57 (189)
Q Consensus 23 ~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfa 57 (189)
++=-|+. .+|+.|..++ |.-.||.||
T Consensus 12 D~W~TP~----~lf~~l~~~f-----g~f~LD~cA 37 (179)
T pfam05869 12 DQWQTPD----ELFWGLNAEF-----GPFDLDAAA 37 (179)
T ss_pred CCCCCCH----HHHHHHHHHH-----CCCCEECCC
T ss_conf 7677969----9999999883-----883263277
No 425
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.64 E-value=7.9 Score=19.85 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=43.6
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHH--
Q ss_conf 5589678611001222---1001101687330111000-12356676420013322100223445665------4210--
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNN-SESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKI-- 113 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~-~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~-- 113 (189)
.++|+.++=.++++|. ++.+.+++|| +|+..+.+ .+..+.+++.++..+ .++..+..|+.+ +.+.
T Consensus 4 ~LkgK~~lITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (250)
T PRK12825 4 SLSGRVALVTGAARGIGRAIALRLAAAGA-DVIVHPPSDEAAAEETVAAVEALG--RRAQAVQADVTDAAALEAAVEELV 80 (250)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 60978899938955899999999998799-899997988789999999998539--948999941899999999999999
Q ss_pred CCCCCCCCCCCC
Q ss_conf 034444310151
Q gi|254780405|r 114 GNISPFQLVYLD 125 (189)
Q Consensus 114 ~~~~~fDiIf~D 125 (189)
....+.|+++.+
T Consensus 81 ~~~g~iDilInn 92 (250)
T PRK12825 81 ERFGAIDILVNN 92 (250)
T ss_pred HHCCCCCEEEEC
T ss_conf 976999899989
No 426
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=45.39 E-value=9.5 Score=19.37 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=37.2
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++|. ++.+.+..||+-++....+.+..+.+.+.++..+. ++..+++|+.
T Consensus 3 ~~L~gKvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~ 67 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDESEANDVAEEIKKVGG--EAIAVKGDVT 67 (261)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 8899998999684778999999999987999999728987899999999996599--3899982799
No 427
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.32 E-value=8.6 Score=19.64 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=26.7
Q ss_pred CCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHH
Q ss_conf 645589678611001222---10011016873301110001
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~ 81 (189)
..+++|+.+|=-++|+|. ++.+.+..|| +|+..|.+.
T Consensus 4 ~~dL~GKvalVTGas~GIGraiA~~lA~~GA-~Vvi~d~~~ 43 (303)
T PRK07792 4 TTDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDIAS 43 (303)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 7568999899928866899999999998699-999971897
No 428
>PRK08703 short chain dehydrogenase; Provisional
Probab=45.29 E-value=9 Score=19.50 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5589678611001222---1001101687330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.++|+++|=-+|++|. ++.+.+.+|| +|+.++.+.+.++.+.+.+.
T Consensus 3 ~L~gK~~lITGas~GIG~aiA~~la~~Ga-~V~l~~r~~~~l~~~~~~l~ 51 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH
T ss_conf 85969899948862899999999998799-89999798889999999999
No 429
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=45.11 E-value=11 Score=18.90 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 30111000123566764200133
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLG 95 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~ 95 (189)
+|..||-|+...+.++..++..+
T Consensus 12 kILlVEDd~~l~~~l~~~L~~~g 34 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLRAAS 34 (240)
T ss_pred EEEEEECCHHHHHHHHHHHHHCC
T ss_conf 79999298999999999999889
No 430
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=44.92 E-value=6.2 Score=20.47 Aligned_cols=87 Identities=15% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC------CCCCCCCHHH-HHHHHHHHHHHC
Q ss_conf 336455896786110012221001101687330111000123566764200------1332210022-344566542100
Q gi|254780405|r 42 VYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSE------LLGVEKNCNI-FFRDVLRLGKIG 114 (189)
Q Consensus 42 ~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~------~~~~~~~~~i-i~~D~~~~~~~~ 114 (189)
.+-.|++|...||.|||.|+|.+ |-. ++...+.++.-++ .+++..+.+- |......++...
T Consensus 31 ~~~~D~~G~~Y~DflaGAG~L~~-----GHN-------~~~~~Q~~~~~l~~~~~~H~LDl~T~~K~~F~~~l~~~~~~~ 98 (445)
T TIGR00709 31 CWVTDVEGKEYLDFLAGAGTLAL-----GHN-------HPNLKQKIKDVLQSGLPLHTLDLTTPLKDAFIEALLNILPKP 98 (445)
T ss_pred CEEEECCCCCHHHHHHHHHHHCC-----CCC-------CHHHHHHHHHHHHHCCCEEEHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 27984277502122210002104-----678-------889999999998607855430022000278999999970688
Q ss_pred CCCCCCCCCCCHHHHHCCHHHHHHHHH
Q ss_conf 344443101513431000288898887
Q gi|254780405|r 115 NISPFQLVYLDPPYGQGLAQQALAIID 141 (189)
Q Consensus 115 ~~~~fDiIf~DPPY~~~~~~~~l~~l~ 141 (189)
+..+|-+.|.-|- +-+-.+..+++-.
T Consensus 99 r~~~Y~l~F~GP~-GA~a~EaA~KLA~ 124 (445)
T TIGR00709 99 RKEDYKLQFPGPS-GADAVEAAIKLAK 124 (445)
T ss_pred CCCCEEEECCCCC-CCCHHHHHHHHHH
T ss_conf 7763178718889-8535789999743
No 431
>pfam08973 DUF1893 Domain of unknown function (DUF1893). This domain is found in a set of hypothetical bacterial proteins. The structure of this protein has recently been solved showing it to belong to the cytidine deaminase superfamily. It has also recently been found that this protein is ADP-ribosylated.
Probab=44.56 E-value=6.1 Score=20.52 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=64.0
Q ss_pred ECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 08867443788886778589999999877633364558967861100122210011016873301110001235667642
Q gi|254780405|r 11 FQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 11 ~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N 90 (189)
+|+.+|.+.+..+++|..+..++. +.+++|+.+.|=--|-||-.+ .+--|.+.|++==+|..|.+.++++
T Consensus 18 ~k~~~i~ts~~rGv~pL~~ll~~~---------~~~l~ga~iaDKVVGKaAA~l-~vlggv~~VyA~VISe~A~~lL~~~ 87 (134)
T pfam08973 18 YKDGKIRTSTQRGVAPLYDLLTDE---------PEFLEGALIADKVIGKAAAAL-MVLGGIKEVYADIISEPALDLLENA 87 (134)
T ss_pred EECCEEEEECCCCHHHHHHHHHHC---------HHHHCCCCHHHHHHHHHHHHH-HHHCCEEEEEHHHHCHHHHHHHHHC
T ss_conf 729868864575738999999859---------888658844677874999999-9947902675325048999999985
Q ss_pred HCCCCCCCCHHH-HHHHH
Q ss_conf 001332210022-34456
Q gi|254780405|r 91 SELLGVEKNCNI-FFRDV 107 (189)
Q Consensus 91 ~~~~~~~~~~~i-i~~D~ 107 (189)
=-.......+-. .+.|-
T Consensus 88 gI~~~Y~~~VP~I~NR~~ 105 (134)
T pfam08973 88 GIEVEYVKLVPFIWNRDG 105 (134)
T ss_pred CCEEEECCCCCEEECCCC
T ss_conf 956760437566775789
No 432
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase; InterPro: IPR005965 1-aminocyclopropane-1-carboxylate deaminase (3.5.99.7 from EC) is a pyridoxal phosphate-dependent enzyme which degrades 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketoglutarate. In plants, the latter is a precursor of the ripening hormone ethylene . This family includes all members of this family for which the function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. ; GO: 0008660 1-aminocyclopropane-1-carboxylate deaminase activity, 0030170 pyridoxal phosphate binding, 0009310 amine catabolic process.
Probab=44.51 E-value=28 Score=16.61 Aligned_cols=100 Identities=26% Similarity=0.384 Sum_probs=61.8
Q ss_pred CCCCCCC------CHHHHHCC-----CCCCHHHHHHHHH-------HHHHHHHHHCCCCCCCCHHHHHHHHH---HHH-H
Q ss_conf 1001222------10011016-----8733011100012-------35667642001332210022344566---542-1
Q gi|254780405|r 55 IFAGTGS------VGFEALSR-----GCHYVLFVDNNSE-------SIRLIRRNSELLGVEKNCNIFFRDVL---RLG-K 112 (189)
Q Consensus 55 lfaGsG~------lgiEalSr-----GA~~v~~vE~~~~-------a~~~lk~N~~~~~~~~~~~ii~~D~~---~~~-~ 112 (189)
+||=||| .|+.+..| -.+.|+.||.+-. .++++++.+++.+++ +-++-..|+. +|. .
T Consensus 202 VC~VTGST~AG~~~G~~~~gRlypada~~~VigiDAS~~~e~T~~Q~lRIA~~TA~~igl~-~d~i~~~Dv~LD~Rf~~p 280 (352)
T TIGR01274 202 VCSVTGSTQAGMVAGFAADGRLYPADAKDRVIGIDASATPEQTKEQILRIARNTAEKIGLE-RDDITEDDVVLDTRFAYP 280 (352)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHCCEEECCCCCC
T ss_conf 9853364246798856650443532224554787146774556899999998778760665-442101022011111577
Q ss_pred ---HCCCC---------CCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf ---00344---------443101513431000288898887448888974999981
Q gi|254780405|r 113 ---IGNIS---------PFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 113 ---~~~~~---------~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
..+.. +..=++-||=|+-....-+++.+.+ +-+++++-|..-|
T Consensus 281 ~YG~P~~~T~eAI~~ca~~Eg~lTDPVYEGKS~~G~i~~ir~-g~~~~G~~vLYaH 335 (352)
T TIGR01274 281 EYGVPNEGTLEAIRLCAKLEGVLTDPVYEGKSMAGMIEMIRR-GEFKEGSNVLYAH 335 (352)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHC-CCCCCCCCEEEEE
T ss_conf 378995357999999863276010765466238999999843-7888765067652
No 433
>PRK05717 oxidoreductase; Validated
Probab=44.49 E-value=8.9 Score=19.54 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=34.3
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 55896786110012221001----101687330111000123566764200133221002234456
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
.++|+.+|=-++++| +|.+ .++.|| +|+..+.|++..+-+.+-+ + +++.++.+|+
T Consensus 7 ~l~GKvalITG~s~G-IG~aia~~la~~Ga-~V~i~~~~~~~~~~~~~~~---~--~~~~~~~~Dv 65 (255)
T PRK05717 7 GHNGRVALVTGAARG-IGLGIAAWLIAEGW-QVVLADLDRERGAKVAKAL---G--ENAWFIAMDV 65 (255)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH---C--CCEEEEEEEC
T ss_conf 999988999587888-99999999998799-8999969889999999984---8--9758999307
No 434
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=44.23 E-value=14 Score=18.37 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5589678611001222---1001101687330111000123566764
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
+++|+.+|=-++++|. ++...+..|| +|+.++.+.+.++-+++
T Consensus 2 ~L~gKvalITGgs~GIG~aia~~~a~~Ga-~V~i~~r~~~~l~~~~~ 47 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA 47 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
T ss_conf 98998899906787899999999998799-99999899899999998
No 435
>PRK07060 short chain dehydrogenase; Provisional
Probab=44.22 E-value=16 Score=18.10 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 45589678611001222---1001101687330111000123566764200
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.+++|+.+|=-++++|. +..+.++.|| +|+.++.+.+.++.+.+...
T Consensus 5 ~~l~gK~~lVTG~~~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~ 54 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAARGA-RVVAAARNQADLDRLAGETG 54 (245)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHC
T ss_conf 379999899947776899999999998799-99999799899999998639
No 436
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=44.17 E-value=9.5 Score=19.37 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=10.6
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 012221001101687330111000
Q gi|254780405|r 57 AGTGSVGFEALSRGCHYVLFVDNN 80 (189)
Q Consensus 57 aGsG~lgiEalSrGA~~v~~vE~~ 80 (189)
|.+|.-+++++....-.++.+|..
T Consensus 33 ~~~~~~al~~~~~~~~DlvilDi~ 56 (229)
T PRK11083 33 FERGLPALDKLRQQPPDLVILDVG 56 (229)
T ss_pred ECCHHHHHHHHHHCCCCEEEECCC
T ss_conf 899999999997189989997388
No 437
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=44.01 E-value=28 Score=16.62 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=46.7
Q ss_pred CCCCCHHH---HHCC-CCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf 12221001---1016-873301110001235667642-001332210022344566542100344443101513431000
Q gi|254780405|r 58 GTGSVGFE---ALSR-GCHYVLFVDNNSESIRLIRRN-SELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 58 GsG~lgiE---alSr-GA~~v~~vE~~~~a~~~lk~N-~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
|.|++|-- .|++ | ..|+++-.++. ++-++++ +.......+.... ...........++|+|++.+ ....
T Consensus 7 GaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~---~~~~~~~~~~~~~Dlviv~v--Ka~q 79 (307)
T COG1893 7 GAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTP---VVAATDAEALGPADLVIVTV--KAYQ 79 (307)
T ss_pred CCCHHHHHHHHHHHHCC-CCEEEEECHHH-HHHHHHCCEEEEECCCCCCCC---CCCCCCCCCCCCCCEEEEEE--CCCC
T ss_conf 78789999999998589-95799810899-999987897998168852244---32356733367888899980--4223
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 2888988874488889749999
Q gi|254780405|r 133 AQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 133 ~~~~l~~l~~~~~L~~~gliii 154 (189)
.++.++.+.. .+++++.|++
T Consensus 80 ~~~al~~l~~--~~~~~t~vl~ 99 (307)
T COG1893 80 LEEALPSLAP--LLGPNTVVLF 99 (307)
T ss_pred HHHHHHHHHH--HCCCCCEEEE
T ss_conf 8999999873--0799848999
No 438
>PRK07102 short chain dehydrogenase; Provisional
Probab=44.01 E-value=8.2 Score=19.75 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=40.7
Q ss_pred CEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------HHHHCCCCCCC
Q ss_conf 678611001222---100110168733011100012356676420013322100223445665------42100344443
Q gi|254780405|r 50 TRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR------LGKIGNISPFQ 120 (189)
Q Consensus 50 ~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~------~~~~~~~~~fD 120 (189)
+++|=.+|++|. ++.+.+++|+ +|+.+..+.+.++.+.+.++..+- ..+.++..|+.+ +.+.. ...+|
T Consensus 2 K~vlITGassGIG~a~A~~la~~G~-~v~l~~R~~~~l~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~-~~~~d 78 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDTERLERIAADLEARGA-VAVATHELDILDTARHAAFLDNL-PALPD 78 (243)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHH-HHHCC
T ss_conf 9799915745999999999998799-899998988999999999985358-62899843403699999999998-75379
Q ss_pred CCCCC
Q ss_conf 10151
Q gi|254780405|r 121 LVYLD 125 (189)
Q Consensus 121 iIf~D 125 (189)
++...
T Consensus 79 ~~v~~ 83 (243)
T PRK07102 79 TVLIA 83 (243)
T ss_pred EEEEE
T ss_conf 79997
No 439
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=43.70 E-value=7.9 Score=19.84 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999877633364558967861100122210011016873301110001
Q gi|254780405|r 31 TKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 31 vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
+++.+-..|.. .|-.|. .|.+|.-+++++....-.++..|..-
T Consensus 12 l~~~l~~~L~~------~g~~V~--~a~~g~~a~~~~~~~~~DlvilDi~l 54 (219)
T PRK10336 12 IGDGIKTGLSK------MGFSVD--WFTQGRQGKEALYSAPYDAVILDLTL 54 (219)
T ss_pred HHHHHHHHHHH------CCCEEE--EECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999998------799999--98999999999862896999997999
No 440
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.70 E-value=10 Score=19.11 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCCCEEEECCCCC-CCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 55896786110012-221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGT-GSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGs-G~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++|+.+|=-+|++ -.+|.+ .+..||+ |++...+.+..+.+++-++.++- .++.++.+|+.
T Consensus 3 ~L~gK~~lVTGaag~rGIG~aiA~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dvs 68 (256)
T PRK08594 3 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYAGERLEKEVRELAETLEQ-QESLVLPCDVT 68 (256)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 99998899989999963999999999987999-99974880669999999987079-94799991389
No 441
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.44 E-value=16 Score=18.06 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=37.3
Q ss_pred CCCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 645589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
..+++|+.+|=-++++|. ++...+..|| +|+.+|.+.+..+...+-. ..++..+.+|+.
T Consensus 10 ~~~l~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~d~~~~~~~~~~~~~-----~~~~~~~~~Dvt 71 (255)
T PRK06841 10 AFDLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLL-----GGNAKGLVCDVS 71 (255)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHC-----CCCEEEEEEECC
T ss_conf 7589999999979677899999999998799-9999969878999999845-----996699998469
No 442
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=43.33 E-value=9.5 Score=19.37 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHCCCCCCCCHHHH-HHHHHHHHHHC--CCCCCCCCCCCHHHHHC----------CHHHHHHHHHH--CCCCCCCEE
Q ss_conf 76420013322100223-44566542100--34444310151343100----------02888988874--488889749
Q gi|254780405|r 87 IRRNSELLGVEKNCNIF-FRDVLRLGKIG--NISPFQLVYLDPPYGQG----------LAQQALAIIDK--EGWLEPNAL 151 (189)
Q Consensus 87 lk~N~~~~~~~~~~~ii-~~D~~~~~~~~--~~~~fDiIf~DPPY~~~----------~~~~~l~~l~~--~~~L~~~gl 151 (189)
+..|++.+.-. .+.+. .-||.++-+.. ...+||.|..+=|..-. .-.++|..... ..+|+++|.
T Consensus 42 ~~~nl~~L~~~-g~~V~~gVDAt~l~~~~~~~~~~fD~IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~ 120 (166)
T pfam10354 42 AEENLEELEEL-GVTVLHGVDATKLKKHFSLKKNRFDRIIFNFPHAGGKIKDSDRNIRLNRELLRGFFKNASELLKPGGE 120 (166)
T ss_pred HHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999858-99599857445366684434783578998799888877412555899999999999999998279989
Q ss_pred EEEECCCCC
Q ss_conf 999817788
Q gi|254780405|r 152 VIIEEYAGT 160 (189)
Q Consensus 152 iiiE~~~~~ 160 (189)
|.+-+-..+
T Consensus 121 i~vTl~~g~ 129 (166)
T pfam10354 121 IHVTLKDGE 129 (166)
T ss_pred EEEEECCCC
T ss_conf 999953899
No 443
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=43.25 E-value=10 Score=19.21 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHH
Q ss_conf 45589678611001222---1001101687330111000123566764200-133221002234456
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE-LLGVEKNCNIFFRDV 107 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~-~~~~~~~~~ii~~D~ 107 (189)
.+++|+.+|=-++++|. ++.+.++.||+-++..+.+.+..+.+.+.++ ..+. ++..+.+|+
T Consensus 4 ~~L~gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~Dv 68 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEADKIAQDLEKKYGI--KARAYPLNI 68 (260)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCC--CEEEEECCC
T ss_conf 77899989996734099999999999879999998599889999999999884198--369997788
No 444
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=42.96 E-value=22 Score=17.25 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 288898887448888974999981
Q gi|254780405|r 133 AQQALAIIDKEGWLEPNALVIIEE 156 (189)
Q Consensus 133 ~~~~l~~l~~~~~L~~~gliiiE~ 156 (189)
....+..+.. .|+|||++++|-
T Consensus 23 l~~~f~~~~~--~l~pgg~lilEp 44 (110)
T pfam06859 23 LKRFFRRIYR--LLRPGGILILEP 44 (110)
T ss_pred HHHHHHHHHH--HHCCCCEEEEEC
T ss_conf 9999999999--618898899967
No 445
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.77 E-value=10 Score=19.13 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=38.2
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+++++.+|=-++++|. +....+.+||+-++....+.+.++.+.+-++..+. ++..+.+|+.
T Consensus 3 ~~~~KvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs 66 (252)
T PRK06947 3 NSDRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGG--RACVVAGDVA 66 (252)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 999908999388358999999999987998999808987899999999996499--2899984799
No 446
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=42.59 E-value=17 Score=17.92 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=49.4
Q ss_pred CCCCCCHHH--H-HCCCC--CCHHHHHHHH--HHHHHHHHH-HCCCCCCCC-HHHHHHHHHHHH--HHCCCCCCCCCCCC
Q ss_conf 012221001--1-01687--3301110001--235667642-001332210-022344566542--10034444310151
Q gi|254780405|r 57 AGTGSVGFE--A-LSRGC--HYVLFVDNNS--ESIRLIRRN-SELLGVEKN-CNIFFRDVLRLG--KIGNISPFQLVYLD 125 (189)
Q Consensus 57 aGsG~lgiE--a-lSrGA--~~v~~vE~~~--~a~~~lk~N-~~~~~~~~~-~~ii~~D~~~~~--~~~~~~~fDiIf~D 125 (189)
-|+||+|-- | |++.- ..|+++..+. +.++.++++ +........ .......+.-.- +.....++|++++-
T Consensus 5 ~G~GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (332)
T TIGR00745 5 IGAGAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKADLVIIT 84 (332)
T ss_pred EECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCCEEEEE
T ss_conf 95178899999998731899518999887216889999858838976256775033044122047533578775489997
Q ss_pred HHHHHC-CHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 343100-02888988874488889749999
Q gi|254780405|r 126 PPYGQG-LAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 126 PPY~~~-~~~~~l~~l~~~~~L~~~gliii 154 (189)
-+. ..++.+..+.. .+.+++.|++
T Consensus 85 ---~K~~~~~~~~~~~~~--~~~~~~~vl~ 109 (332)
T TIGR00745 85 ---VKAYQTEEALALLLP--LIGPNTVVLL 109 (332)
T ss_pred ---ECCCCHHHHHHHHHH--HCCCCCEEEE
T ss_conf ---035004899999986--4188827999
No 447
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=17 Score=17.93 Aligned_cols=129 Identities=26% Similarity=0.414 Sum_probs=65.1
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 74437888867785899999998776333645589678611001222100110168733011100012356676420013
Q gi|254780405|r 15 LLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 15 ~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
-+.--.+...=|..+|+|..+| |....|..+.|-++.|+--- +..+ -|++.. +.++..+.+++.++.+
T Consensus 63 I~~~GedI~~l~~~ERAr~Gif--LafQ~P~ei~GV~~~~fLr~----a~n~-~~~~~~-----~~~~~~~~~~e~~~~l 130 (251)
T COG0396 63 ILFDGEDILELSPDERARAGIF--LAFQYPVEIPGVTNSDFLRA----AMNA-RRGARG-----ILPEFIKELKEKAELL 130 (251)
T ss_pred EEECCCCCCCCCHHHHHHCCCE--EEECCCCCCCCEEHHHHHHH----HHHH-HHCCCC-----CCHHHHHHHHHHHHHC
T ss_conf 9987854255998688861877--65117754778009999999----9975-403564-----3388999999999883
Q ss_pred CCCCCHHHHHHHHH-----------HHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHC--CCCC-CCEEEEEECCCC
Q ss_conf 32210022344566-----------54210034444310151343100028889888744--8888-974999981778
Q gi|254780405|r 95 GVEKNCNIFFRDVL-----------RLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKE--GWLE-PNALVIIEEYAG 159 (189)
Q Consensus 95 ~~~~~~~ii~~D~~-----------~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~--~~L~-~~gliiiE~~~~ 159 (189)
++.. .+...++- ++++..-.+| +++.+|-| +.++.-..++.+.+. .+.. ..+++++-|...
T Consensus 131 ~~~~--~~l~R~vN~GFSGGEkKR~EilQ~~~leP-kl~ILDE~-DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 131 GLDE--EFLERYVNEGFSGGEKKRNEILQLLLLEP-KLAILDEP-DSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred CCCH--HHHHCCCCCCCCCCHHHHHHHHHHHHCCC-CEEEECCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 9998--99616567774731577999999984599-88995588-7675589999999999998658972999955799
No 448
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=42.41 E-value=9.3 Score=19.43 Aligned_cols=46 Identities=28% Similarity=0.343 Sum_probs=30.3
Q ss_pred CCCCCCEEEECCCC-CCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45589678611001-22210011016-873301110001235667642
Q gi|254780405|r 45 VFLDSTRMLNIFAG-TGSVGFEALSR-GCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 45 ~~~~~~~vlDlfaG-sG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N 90 (189)
..+..++|+=++|| -|+-.++.|.| |..+++.+|.|.--...+.+.
T Consensus 17 ~~L~~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ 64 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQ 64 (228)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf 998649789988778899999999983997589997874556764221
No 449
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=42.23 E-value=11 Score=18.94 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 110001235667642001
Q gi|254780405|r 76 FVDNNSESIRLIRRNSEL 93 (189)
Q Consensus 76 ~vE~~~~a~~~lk~N~~~ 93 (189)
.||-|+...+.+...++.
T Consensus 5 iVEDd~~l~~~l~~~L~~ 22 (223)
T PRK11517 5 LIEDNQRTQEWVTQGLSE 22 (223)
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 996989999999999998
No 450
>PRK08507 prephenate dehydrogenase; Validated
Probab=41.79 E-value=20 Score=17.46 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCCHHHHHC-CC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHCCHHHH
Q ss_conf 221001101-68-733011100012356676420013322100223445665421003444431015-134310002888
Q gi|254780405|r 60 GSVGFEALS-RG-CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYL-DPPYGQGLAQQA 136 (189)
Q Consensus 60 G~lgiEalS-rG-A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~-DPPY~~~~~~~~ 136 (189)
|++++ ||. +| +.+|+.+|.|++.++.+++. +.-+.+. +.. .....|+|++ -|| ....+.
T Consensus 13 gSla~-alk~~~~~~~V~g~d~~~~~~~~A~~~----g~id~~~----~~~------~i~~aDlVila~Pv---~~~~~~ 74 (275)
T PRK08507 13 GSLGL-ALKENKLISCVYGYDHNEEHEKDALDL----GLVDEIV----EFE------EIKECDVIFLAIPV---DAIIEI 74 (275)
T ss_pred HHHHH-HHHHCCCCCEEEEEECCHHHHHHHHHC----CCCCCCC----CHH------HCCCCCEEEEECCH---HHHHHH
T ss_conf 99999-999509986799995999999999986----9986106----731------23657989991769---999999
Q ss_pred HHHHHHCCCCCCCEEEE
Q ss_conf 98887448888974999
Q gi|254780405|r 137 LAIIDKEGWLEPNALVI 153 (189)
Q Consensus 137 l~~l~~~~~L~~~glii 153 (189)
++.+.. ++++++|.
T Consensus 75 l~~l~~---l~~~~iit 88 (275)
T PRK08507 75 LQKLLD---IKENTTII 88 (275)
T ss_pred HHHHHH---CCCCCEEE
T ss_conf 999860---46788898
No 451
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.39 E-value=27 Score=16.69 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=5.8
Q ss_pred EEEEEEEECCEE
Q ss_conf 199864108867
Q gi|254780405|r 4 IRIIGGKFQRRL 15 (189)
Q Consensus 4 mrii~G~~kg~~ 15 (189)
|+++.|+++|.+
T Consensus 2 m~lt~~K~~~l~ 13 (340)
T PRK12858 2 MKISAGKLKGLN 13 (340)
T ss_pred CEECHHHHHHHH
T ss_conf 420699999899
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=41.30 E-value=9.8 Score=19.29 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCCEEEECCCCCCCCHHHH----HCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8967861100122210011----016873301110001235667642
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEA----LSRGCHYVLFVDNNSESIRLIRRN 90 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEa----lSrGA~~v~~vE~~~~a~~~lk~N 90 (189)
.|..++=+ |.|.+|+-| ..+|| +|+.+|.+++.++.+++.
T Consensus 166 ~g~~V~V~--G~G~iGl~a~~~ak~~Ga-~Vi~vd~~~~rle~a~~~ 209 (349)
T TIGR03201 166 KGDLVIVI--GAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC
T ss_conf 99889998--974899999999998599-799994999999999964
No 453
>PRK08324 short chain dehydrogenase; Validated
Probab=40.86 E-value=12 Score=18.86 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHH---------HHHC-CCCCCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 677858999999987---------7633-36455896786110012221001----101687330111000123566764
Q gi|254780405|r 24 IRPSDSRTKKALFDI---------LTHV-YPVFLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRR 89 (189)
Q Consensus 24 ~RPt~~~vrealFni---------L~~~-~~~~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~ 89 (189)
.+|.++ +-+|+| |+-. .+..++|+.+|=-++++| +|.+ .+..|| +|+.+|+|.+.++.+.+
T Consensus 389 ~~~l~e---~e~F~~EYW~LEqaKL~~~~~~~~L~GKVALVTGga~G-IG~A~A~~fa~eGA-~Vvl~D~~~~~l~~~a~ 463 (676)
T PRK08324 389 YEPLSE---QEAFDIEYWSLEQAKLQKMPKPKPLAGKVALVTGAAGG-IGLATAKRLAAEGA-CVVLADIDEEAAEAAAA 463 (676)
T ss_pred CCCCCH---HHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
T ss_conf 611688---88536565517788862689998889987999479881-62999999998799-89999588899999999
Q ss_pred HHCCCCCCCCHHHHHHHHH
Q ss_conf 2001332210022344566
Q gi|254780405|r 90 NSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 90 N~~~~~~~~~~~ii~~D~~ 108 (189)
.+.. ...+..+.+|+.
T Consensus 464 el~~---~~~~~~~~~DVt 479 (676)
T PRK08324 464 ELGG---RDRALGVACDVT 479 (676)
T ss_pred HHHC---CCCEEEEEECCC
T ss_conf 9707---994799980689
No 454
>PRK06057 short chain dehydrogenase; Provisional
Probab=40.84 E-value=18 Score=17.76 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=34.3
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5589678611001222---1001101687330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
.++|+.+|=-++++|. ++...+..|| +|+..|.+.+..+.+.+.++
T Consensus 4 rL~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~ 52 (255)
T PRK06057 4 RLAGRVAVITGGASGIGLATARRMRAEGA-TVVVGDIDPEAGKAAADELG 52 (255)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC
T ss_conf 88999899968488899999999998699-89999698899999998649
No 455
>pfam06543 Lac_bphage_repr Lactococcus bacteriophage repressor. This family represents the C-terminus of Lactococcus bacteriophage repressor proteins.
Probab=40.68 E-value=20 Score=17.39 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 88677858999999987763
Q gi|254780405|r 22 RSIRPSDSRTKKALFDILTH 41 (189)
Q Consensus 22 ~~~RPt~~~vrealFniL~~ 41 (189)
..-||.++-||||+|-+++-
T Consensus 26 FdG~PlsDeVK~amk~i~gk 45 (49)
T pfam06543 26 FDGRPLSDEVKEAMKKILGK 45 (49)
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 18933748999999999611
No 456
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.68 E-value=11 Score=19.09 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=35.4
Q ss_pred CCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 47 LDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 47 ~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
++|+.+|=-++++|. ++.+.+..||+-++..+.+.+..+.+.+-++..+. ++..+.+|+.
T Consensus 1 L~gKvalITGgs~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs 63 (249)
T PRK06077 1 LKDKVVVVTGSGRGIGRAIAVRLAKEGAKVVVNAKKRAEEMNETLRMVKEYGG--EGIGVLADVS 63 (249)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 96198999263678999999999987998999848876899999999997599--5899984799
No 457
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=40.65 E-value=9.5 Score=19.36 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 30111000123566764200133221002234456654210034444310151
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
+|.-||-++.....++.-++..+.+ +. ...+..+.+......++|+|++|
T Consensus 2 kVLivdD~~~~~~~l~~~l~~~g~~--v~-~~~~g~~~~~~~~~~~~dlil~D 51 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYE--VD-EATDGEEALELLKEEKPDLILLD 51 (55)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHCCCCCEEEEE
T ss_conf 8999937999999999999978999--99-98899999999974999999996
No 458
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=40.31 E-value=9.4 Score=19.40 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHCCHHHHHHHHHHC
Q ss_conf 1110001235667642001332210022344566542100344443101513--43100028889888744
Q gi|254780405|r 75 LFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP--PYGQGLAQQALAIIDKE 143 (189)
Q Consensus 75 ~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP--PY~~~~~~~~l~~l~~~ 143 (189)
..||=++...+.+++-++..+.. +. ...|..+.++.....+||+|++|= | .-...++++.|.+.
T Consensus 2 LvVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~~al~~~~~~~~dlvi~Di~mP--~~dG~el~~~ir~~ 67 (111)
T pfam00072 2 LIVDDDPLIRELLRQLLEKEGYV--VA-EADDGEEALELLKEKRPDLILLDIRMP--GMDGLELLRRIRRR 67 (111)
T ss_pred EEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHCCCCEEEEECCCC--CCCHHHHHHHHHHC
T ss_conf 99989899999999999988999--99-989999999999847998999953689--95015799999735
No 459
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.78 E-value=13 Score=18.57 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=33.2
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---1001101687330111000----1235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNN----SESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~----~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
..++|+.+|=-++++|. +....+.+||+ |+.++.+ ....+-+.+.++..+ .++..+.+|+.
T Consensus 4 ~~L~gKvalVTGgs~GIG~aiA~~la~~Ga~-vv~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~ 71 (257)
T PRK12744 4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAATKADAEETVAAVKAAG--AKAVAFQADLT 71 (257)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCC
T ss_conf 9989998999288758999999999987998-99993787436899999999999739--92899976889
No 460
>PRK10693 response regulator of RpoS; Provisional
Probab=39.29 E-value=11 Score=18.98 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=29.4
Q ss_pred ECCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 08867443788886778589999999877633364558967861100122210011016873301110001
Q gi|254780405|r 11 FQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 11 ~kg~~l~~~~~~~~RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
..|++|-..++. ..+|+.+=.+|.. .|..+. .|.+|.=+++.+.+..-.++..|..-
T Consensus 5 l~gkkILIVDDd------~~~r~~l~~~L~~------~G~~V~--~A~nG~eAl~~l~~~~pDLIi~Dl~M 61 (337)
T PRK10693 5 LVGKQILIVEDE------PVFRSLLDSWFSS------LGATTV--LAADGVDALELLGGFTPDLMICDIAM 61 (337)
T ss_pred CCCCEEEEECCC------HHHHHHHHHHHHH------CCCEEE--EECCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 889989999499------9999999999997------899999--98999999999865899999996899
No 461
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=39.05 E-value=19 Score=17.56 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=47.8
Q ss_pred EEEECCCCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 786110012221001---10168733011100012356676420013------322100223445665421003444431
Q gi|254780405|r 51 RMLNIFAGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELL------GVEKNCNIFFRDVLRLGKIGNISPFQL 121 (189)
Q Consensus 51 ~vlDlfaGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~------~~~~~~~ii~~D~~~~~~~~~~~~fDi 121 (189)
++.=+ |.|++|.- .|++....|+.+..+++.++.+.++-++. .+.+++++ ..|..+.+ +..|+
T Consensus 2 KI~Ii--GaG~wGtAla~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~-~~dl~~a~-----~~adi 73 (159)
T pfam01210 2 KIAVL--GAGSWGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRA-TTDLEEAI-----KGADI 73 (159)
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEE-CCCHHHHH-----HCCCE
T ss_conf 89999--969999999999998799899999043666778866978210478645553054-28899998-----37989
Q ss_pred CCC-CHHHHHCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 015-13431000288898887448888974999
Q gi|254780405|r 122 VYL-DPPYGQGLAQQALAIIDKEGWLEPNALVI 153 (189)
Q Consensus 122 If~-DPPY~~~~~~~~l~~l~~~~~L~~~glii 153 (189)
|++ =|+ +....+++.+.. .++++..++
T Consensus 74 Iiiavps---~~~~~~~~~i~~--~~~~~~~iv 101 (159)
T pfam01210 74 IVLAVPS---QALREVLKQLKG--LLSPGAILV 101 (159)
T ss_pred EEEECCH---HHHHHHHHHHHH--HCCCCCEEE
T ss_conf 9991748---899999999986--557655688
No 462
>PRK04148 hypothetical protein; Provisional
Probab=38.90 E-value=34 Score=16.09 Aligned_cols=128 Identities=21% Similarity=0.368 Sum_probs=68.8
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH--HHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999987763336455896786110012221001--101-68733011100012356676420013322100223445665
Q gi|254780405|r 33 KALFDILTHVYPVFLDSTRMLNIFAGTGSVGFE--ALS-RGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 33 ealFniL~~~~~~~~~~~~vlDlfaGsG~lgiE--alS-rGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
|.++..+...++ ..++..++++ |-|..--- .|. +|. .|+.+|.++.|+.-+++ . ....+..|+++
T Consensus 2 ~~iaeyI~~~y~-~~~~~kIvEv--GIGf~~~vA~~L~e~g~-dv~~~Din~~aV~~a~~----~----Gl~~v~DDif~ 69 (135)
T PRK04148 2 DTIAEYIARNYP-HLKNGKIAEL--GIGFYFKVAKKLKESGF-DVIVIDINKKAVEKAKK----L----GLNAFVDDIFN 69 (135)
T ss_pred HHHHHHHHHHCC-CCCCCEEEEE--ECCCCHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----C----CCCEEECCCCC
T ss_conf 069999998542-1128738999--23666789999987499-88999576554322123----2----87637515889
Q ss_pred HH-HHCCCCCCCCCCC-CHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 42-1003444431015-13431000288898887448888974999981778886757885799983418569998650
Q gi|254780405|r 110 LG-KIGNISPFQLVYL-DPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTKIYFFSY 186 (189)
Q Consensus 110 ~~-~~~~~~~fDiIf~-DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~yG~t~i~f~~~ 186 (189)
-. +.. +..|+||. -||- .+...+++.-.+ ++-+-+| .- -..+ ..+.++++ .+|....+.+|+.
T Consensus 70 P~l~iY--~~a~lIYSIRPp~--Elq~~il~lakk---v~~dliI-~P-L~~E--~~~~~lKl---vNYkg~~~Y~~~~ 134 (135)
T PRK04148 70 PNLEIY--KNAKLIYSIRPPR--DLQPFILELAKK---LNCPLYI-KP-LSGE--EPIEELKL---INYKGKPIYVWKP 134 (135)
T ss_pred CCHHHH--CCCCEEEEECCCH--HHHHHHHHHHHH---CCCCEEE-EC-CCCC--CCCCCEEE---EEECCCEEEEECC
T ss_conf 988885--1788799818987--888999999997---5998999-70-7888--76665267---8608817998657
No 463
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=38.69 E-value=34 Score=16.07 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=46.6
Q ss_pred EEEECCCCCCCCH--H--HHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHHHHH-------C
Q ss_conf 7861100122210--0--110168733011100012356676420013-----3221002234456654210-------0
Q gi|254780405|r 51 RMLNIFAGTGSVG--F--EALSRGCHYVLFVDNNSESIRLIRRNSELL-----GVEKNCNIFFRDVLRLGKI-------G 114 (189)
Q Consensus 51 ~vlDlfaGsG~lg--i--EalSrGA~~v~~vE~~~~a~~~lk~N~~~~-----~~~~~~~ii~~D~~~~~~~-------~ 114 (189)
+|.=+ |+|.|| | -+++.|. .|+.+|.++++++.+++-++.. ++.++-.+-..++...+.. .
T Consensus 5 ~VaVi--GaG~MG~gIA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 5 VIGVV--GSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 89998--876889999999995899-889998998999999999997189999998668999999999983664358888
Q ss_pred CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 3444431015134310002888988874488889749999
Q gi|254780405|r 115 NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 115 ~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
.....|+|+=-=|=+...-.+++..|.+ ++.+++++.-
T Consensus 82 ~~~~aDlViEav~E~l~iK~~lf~~l~~--~~~~~~IlaS 119 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELER--NVSPETIIAS 119 (291)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEEE
T ss_conf 9765999998883889999999999996--5899837986
No 464
>PRK09989 hypothetical protein; Provisional
Probab=38.20 E-value=35 Score=16.02 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=63.0
Q ss_pred EEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 8611001222-10011016873301110001235667642-0013322---10022344566542100344443101513
Q gi|254780405|r 52 MLNIFAGTGS-VGFEALSRGCHYVLFVDNNSESIRLIRRN-SELLGVE---KNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 52 vlDlfaGsG~-lgiEalSrGA~~v~~vE~~~~a~~~lk~N-~~~~~~~---~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
..|.++..|. +.||.|+.....-+|+....++++++++- ..++++. =+.++..+|+...++.....-..+=++|.
T Consensus 129 aa~~~~~~gi~lliEPlN~~~~Pgyfl~~~~~a~~ii~~v~~pnv~l~~D~yH~q~~~gdl~~~i~~~~~~igHvQiA~~ 208 (258)
T PRK09989 129 AADRFAAHGKRILVEALSPGVKPHYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGL 208 (258)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCEEEECCC
T ss_conf 99988754986999656844578871389999999999819998672065788987188899999984432257885789
Q ss_pred HHH------HCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 431------0002888988874488889749999817788
Q gi|254780405|r 127 PYG------QGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 127 PY~------~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
|.. .-.+..++..|.+.+ =+|.|-+|.....
T Consensus 209 P~R~ePg~Gei~~~~if~~l~~~G---Y~G~ig~EY~P~~ 245 (258)
T PRK09989 209 PDRHEPDDGEINYPWLFRLFDEVG---YQGWIGCEYKPRG 245 (258)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHC---CCCEEEEEEECCC
T ss_conf 999999898749999999999849---9974778873499
No 465
>KOG2798 consensus
Probab=38.11 E-value=35 Score=16.02 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=23.5
Q ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 558967861100122210011016873301110001
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNS 81 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~ 81 (189)
..+...+|=.+||.|-++.+..-.|.+ +-..|.+-
T Consensus 148 ~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy 182 (369)
T KOG2798 148 ERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSY 182 (369)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCC-CCCCHHHH
T ss_conf 555862881488711678998874333-34307899
No 466
>PRK08628 short chain dehydrogenase; Provisional
Probab=37.83 E-value=11 Score=18.94 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=35.7
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++|. ++.+.+..|| +|+.++.+.+..+..++ ++..+ .++..+.+|+.
T Consensus 3 ~~l~gKvalVTG~s~GIG~a~a~~la~~Ga-~v~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dvs 65 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGA-IPVVFGRSAPDDEFAEE-LRALQ--PRAEFVQVDLQ 65 (258)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHH-HHHCC--CCEEEEEEECC
T ss_conf 997999899927777899999999998799-89998088023999999-99539--97899995279
No 467
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.59 E-value=22 Score=17.22 Aligned_cols=10 Identities=30% Similarity=0.159 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999987763
Q gi|254780405|r 32 KKALFDILTH 41 (189)
Q Consensus 32 realFniL~~ 41 (189)
|..+-..|..
T Consensus 53 K~~v~~~Ltp 62 (326)
T PRK04161 53 KVLVSEELTP 62 (326)
T ss_pred HHHHHHHHHH
T ss_conf 9999998655
No 468
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=37.05 E-value=14 Score=18.35 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCCEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 55896786110012221001----101687330111000123566764200
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSE 92 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~ 92 (189)
+++|+.+|=-++++| +|.+ .+..|| +|+..+.+.+.++.+.+.+.
T Consensus 6 ~L~gK~alVTG~s~G-IG~aiA~~la~~Ga-~Vvi~~r~~~~l~~~~~~l~ 54 (251)
T PRK07523 6 DLTGRRALITGSSQG-IGYALAKGLAQAGA-EVILNGRDAAKLAAAAESLK 54 (251)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCC
T ss_conf 689998999583669-99999999998799-99999699899999999818
No 469
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=37.02 E-value=19 Score=17.63 Aligned_cols=55 Identities=7% Similarity=0.043 Sum_probs=34.1
Q ss_pred ECCEEEECCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC
Q ss_conf 08867443788886778-58999999987763336455896786110012221001101687
Q gi|254780405|r 11 FQRRLLHTPQNRSIRPS-DSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC 71 (189)
Q Consensus 11 ~kg~~l~~~~~~~~RPt-~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA 71 (189)
-||-+|-+.++.++|-. +-.+=+.|-..++. .+ ....||+|||.+=||=|+..++
T Consensus 5 ~~~~rILSLDGGGiRGl~~~~iL~~le~~~g~----~i--~~~FDli~GTStGgiiA~~L~~ 60 (308)
T cd07211 5 GRGIRILSIDGGGTRGVVALEILRKIEKLTGK----PI--HELFDYICGVSTGAILAFLLGL 60 (308)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC----CH--HHHCCEEEEECHHHHHHHHHHC
T ss_conf 99857999888819899999999999987697----87--8868986880898999999855
No 470
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=37.00 E-value=19 Score=17.61 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCEEEECCCCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 896786110012221001---1016873301110001235667642-001332210022344566542100344443101
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRN-SELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N-~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf 123 (189)
+..+|+=+ |.|++|.- .|++.-..|+++-... .+.+++| +...+.....++..-.+.. ......++|+||
T Consensus 4 ~~~kI~Ii--GaGAiG~~~a~~L~~aG~~V~li~r~~--~~ai~~~Gl~i~~~~g~~~~~~~~~~~--~~~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIAII--GTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPQVQAYR--SAEDMPPCDWVL 77 (313)
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHCCEEEEECCCCEEECCCEEEC--CHHHCCCCCEEE
T ss_conf 98889999--914999999999996699569996755--999986885999669828976840236--977839965899
Q ss_pred CCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 5134310002888988874488889749999
Q gi|254780405|r 124 LDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 124 ~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
+=- .......+++.+. .++.+++.|+.
T Consensus 78 v~v--Ks~~~~~~~~~l~--~~~~~~t~il~ 104 (313)
T PRK06249 78 VGL--KTTANALLAPLIP--QVAAPGAKVLL 104 (313)
T ss_pred EEC--CCCCHHHHHHHHH--HHCCCCCEEEE
T ss_conf 953--6677899999878--64489958999
No 471
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=36.59 E-value=13 Score=18.50 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=34.1
Q ss_pred CCCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222100----11016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++| +|. ..+..||+ |++++.+. .+...+.++..+ .++..+.+|+.
T Consensus 4 f~L~gKvalVTGas~G-IG~aia~~la~~Ga~-Vv~~~~~~--~~~~~~~~~~~g--~~~~~~~~Dv~ 65 (251)
T PRK12481 4 FDLNGKVAIITGCNTG-LGQGMAIGLAKAGAD-IVGVGVAE--APETQAQVEALG--RKFHFITADLI 65 (251)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHHCCCE-EEEECCCC--HHHHHHHHHHCC--CCEEEEEECCC
T ss_conf 2899998999486768-999999999986999-99978987--199999999759--94799991279
No 472
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=36.34 E-value=11 Score=19.10 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 12221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 58 GTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 58 GsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
||+.+|.+ .+++|| +|+..+.+.+.++-+.+.++..+ ++..+.+|+.
T Consensus 8 as~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~Dv~ 58 (259)
T PRK08340 8 SSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKELG---EVYAIKADLS 58 (259)
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCC---CEEEEEEECC
T ss_conf 877899999999998799-99999799899999999987418---8799996369
No 473
>PRK06940 short chain dehydrogenase; Provisional
Probab=36.15 E-value=14 Score=18.29 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 55896786110012221001---101687330111000123566764200133221002234456
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDV 107 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~ 107 (189)
.++++.++== |+|.+|.. .|..|| +|+..+.+.+.++.+.+.++..+. ++..+.+|+
T Consensus 2 rL~~kV~v~t--Ga~GIG~aiA~~la~Ga-~vvi~~~~~~~l~~~~~~l~~~g~--~~~~~~~Dv 61 (277)
T PRK06940 2 NMSKEVVVVI--GAGGMGQAIARRVGSGK-TVLLADYNEENLQAVARTLREAGF--DVITQQVDV 61 (277)
T ss_pred CCCCCEEEEC--CCCHHHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCC
T ss_conf 9899299997--81699999999998199-899998988999999999872288--299998257
No 474
>PRK08223 hypothetical protein; Validated
Probab=36.15 E-value=7.4 Score=20.01 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCCCCCEEEECCC-CCCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4558967861100-122210011016-8733011100012356676420
Q gi|254780405|r 45 VFLDSTRMLNIFA-GTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 45 ~~~~~~~vlDlfa-GsG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~ 91 (189)
..+..++|+=.+| |.|+..++.|.| |..+...+|.|.--...+.+.+
T Consensus 23 ~kL~~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~velSNLnRQi 71 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVFELVNSNRQY 71 (287)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 9985596899936755799999999828975999749984634402223
No 475
>KOG1205 consensus
Probab=35.53 E-value=14 Score=18.44 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCCCCCEEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 4558967861100122---2100110168733011100012356676420013322100223445665
Q gi|254780405|r 45 VFLDSTRMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
..+.|+.|+=-+|-|| +++.|-+++||+ ++.+-...+.++.+.+-++.....+++.++.+|+.+
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~ 74 (282)
T KOG1205 8 ERLAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD 74 (282)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 8738988999578717889999999867773-477424320289999999974786764799676588
No 476
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=35.50 E-value=14 Score=18.41 Aligned_cols=115 Identities=13% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCH
Q ss_conf 896786110012221001101687330111000123566764200133221002234456654210034444310-1513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV-YLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI-f~DP 126 (189)
....|.|++||-+.++- ++..+ .+|+..|.-. .+-.|..+|..+. + ......|+. |+=-
T Consensus 67 ~~~vIaD~GCGdA~lA~-~~~~~-~kV~SfDLva----------------~n~~Vt~cDi~~~-P-L~d~svDvaVfCLS 126 (214)
T pfam05148 67 GNGVIADLGCGEARIAF-RKREF-ENVHSFDLVA----------------VNKRVIPCDMARV-P-LEDESVDVAVFCLS 126 (214)
T ss_pred CCEEEEECCCCHHHHHH-HCCCC-CEEEEEECCC----------------CCCCCCCCCCCCC-C-CCCCCEEEEEEEHH
T ss_conf 97189975886579998-64678-7388513256----------------8988351353368-7-88772636877587
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCEEEEE-ECCCC-CCCC------CCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 4310002888988874488889749999-81778-8867------57885799983418569998650
Q gi|254780405|r 127 PYGQGLAQQALAIIDKEGWLEPNALVII-EEYAG-TCIS------VGAAFHFLQERKYGDTKIYFFSY 186 (189)
Q Consensus 127 PY~~~~~~~~l~~l~~~~~L~~~gliii-E~~~~-~~~~------~~~~~~~~~~k~yG~t~i~f~~~ 186 (189)
=-+.+...-+. ..+.+|+++|.+.| |-.+. ++.. ..-+|.+.. +.--++.+.++.+
T Consensus 127 LMGTN~~~fi~---EA~RvLk~~G~L~IAEV~SRf~~~~~Fv~~~~~~GF~~~~-~d~~n~~F~~f~F 190 (214)
T pfam05148 127 LMGTNIADFLK---EANRILKNGGLLKIAEVRSRFPSVGLFERAFTKLGFEVEH-VDLSNAQFVLFEF 190 (214)
T ss_pred HHCCCHHHHHH---HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEE-EECCCCEEEEEEE
T ss_conf 62887799999---9876031087899999740168989999999975976775-3068888999999
No 477
>KOG4169 consensus
Probab=35.37 E-value=10 Score=19.23 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCCCCEEEECCCCCCCCHH----HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5589678611001222100----110168733011100012356676420013322100223445665
Q gi|254780405|r 46 FLDSTRMLNIFAGTGSVGF----EALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~lgi----EalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
++.|+++|=..+ -|.+|+ +.|.+|++ +..++.+.+..+...+ ++..+-...+-++.+|+..
T Consensus 2 ~~tGKna~vtgg-agGIGl~~sk~Ll~kgik-~~~i~~~~En~~a~ak-L~ai~p~~~v~F~~~DVt~ 66 (261)
T KOG4169 2 DLTGKNALVTGG-AGGIGLATSKALLEKGIK-VLVIDDSEENPEAIAK-LQAINPSVSVIFIKCDVTN 66 (261)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHCCCH-HEEEHHHHHCHHHHHH-HHCCCCCCEEEEEEECCCC
T ss_conf 413745899637-863669999999976715-4061040147899998-8603998439999801200
No 478
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=35.21 E-value=19 Score=17.61 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHH---HHHHHHHHHCCCCCCCCHHHHHH-
Q ss_conf 99999998776333645589678611001222100110168733011100012---35667642001332210022344-
Q gi|254780405|r 30 RTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSE---SIRLIRRNSELLGVEKNCNIFFR- 105 (189)
Q Consensus 30 ~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~---a~~~lk~N~~~~~~~~~~~ii~~- 105 (189)
..|+.+=..|... .+..++.- |++|.=+++++.+.--.++|.|++-. -++.+++ ++ ......++.-
T Consensus 12 ~~~~~l~~~l~~~-----~~i~~~~~-~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~-l~---~~~~~~iIFvT 81 (239)
T PRK11697 12 LAREELRELLQEE-----GDIEIVGE-CSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGM-LD---PEHMPYIVFVT 81 (239)
T ss_pred HHHHHHHHHHHHC-----CCEEEEEE-ECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH-HC---CCCCCEEEEEE
T ss_conf 9999999999758-----79899999-899999999998539999998399869599999998-37---33498699995
Q ss_pred -HHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
Q ss_conf -5665421003444431015134310002888988874
Q gi|254780405|r 106 -DVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDK 142 (189)
Q Consensus 106 -D~~~~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~ 142 (189)
.-.-.++......+|.+.= |+........++.+.+
T Consensus 82 ~~~e~a~~af~~~a~dYllK--P~~~e~l~~~l~r~~~ 117 (239)
T PRK11697 82 AFDEYAIKAFEEHAFDYLLK--PIDPARLAKTLARLRQ 117 (239)
T ss_pred CCHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHH
T ss_conf 86899999973097266538--9999999999999999
No 479
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=35.20 E-value=12 Score=18.81 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCCCCCEEEECCCC-CCCCHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45589678611001-22210011016-8733011100012356676420
Q gi|254780405|r 45 VFLDSTRMLNIFAG-TGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNS 91 (189)
Q Consensus 45 ~~~~~~~vlDlfaG-sG~lgiEalSr-GA~~v~~vE~~~~a~~~lk~N~ 91 (189)
..+..++|+=++|| -|+-.++.|.| |..+++.||.|.-....+.+.+
T Consensus 28 ~kL~~s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~ 76 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQV 76 (245)
T ss_pred HHHHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 9997197899877777899999999859965999968867888678886
No 480
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=34.99 E-value=22 Score=17.25 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=9.0
Q ss_pred CCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 12221001101687330111000
Q gi|254780405|r 58 GTGSVGFEALSRGCHYVLFVDNN 80 (189)
Q Consensus 58 GsG~lgiEalSrGA~~v~~vE~~ 80 (189)
++|.=+++.+....-.++.+|.+
T Consensus 31 ~~~~ea~~~~~~~~~DlvilDi~ 53 (222)
T PRK10643 31 STAREAEQSLESGHYSLVVLDLG 53 (222)
T ss_pred CCHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999999997489989999688
No 481
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=34.38 E-value=11 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=9.5
Q ss_pred CCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 12221001101687330111000
Q gi|254780405|r 58 GTGSVGFEALSRGCHYVLFVDNN 80 (189)
Q Consensus 58 GsG~lgiEalSrGA~~v~~vE~~ 80 (189)
.+|.-+++++.+..-.++.+|..
T Consensus 36 ~~~~~a~~~~~~~~~DlvilDi~ 58 (239)
T PRK09468 36 ANAEQMDRLLTRESFHLMVLDLM 58 (239)
T ss_pred CCHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999997589989998789
No 482
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=34.32 E-value=16 Score=18.10 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 45589678611001222---10011016873301110001235667642001332210022344566
Q gi|254780405|r 45 VFLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 45 ~~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
.+++|+.+|=-++++|. ++...+..||+ |+..+.+.+. +-.++-++..+ .++..+.+|+.
T Consensus 11 f~L~gKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~~~~~~-~~~~~~~~~~g--~~~~~~~~Dvs 73 (258)
T PRK06935 11 FSLKGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHGTNW-DETRRLIEKEG--RKVTFVQLDLT 73 (258)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEECCCCCH-HHHHHHHHHCC--CCEEEEEECCC
T ss_conf 1999998999485758999999999987999-9997299789-99999999669--93799990489
No 483
>PRK08643 acetoin reductase; Validated
Probab=33.68 E-value=15 Score=18.22 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=33.0
Q ss_pred CEEEECCCCCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 6786110012221001----1016873301110001235667642001332210022344566
Q gi|254780405|r 50 TRMLNIFAGTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVL 108 (189)
Q Consensus 50 ~~vlDlfaGsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~ 108 (189)
+.+|=- .|++.+|.+ .++.|| +|...|.+.+.++.+.+.++..+. ++..+.+|+.
T Consensus 3 KvalVT-Gg~~GIG~aia~~la~~Ga-~V~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~Dvt 61 (256)
T PRK08643 3 KVALVT-GAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAKAAADKLSSDGG--KAIAVKADVS 61 (256)
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 499995-7578899999999998799-999996988999999999985399--0999980589
No 484
>COG4996 Predicted phosphatase [General function prediction only]
Probab=33.51 E-value=41 Score=15.57 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC-CCCCCCCCCCCH-HHHHCCHHHHHHHHHH--
Q ss_conf 16873301110001235667642001332-210022344566542100-344443101513-4310002888988874--
Q gi|254780405|r 68 SRGCHYVLFVDNNSESIRLIRRNSELLGV-EKNCNIFFRDVLRLGKIG-NISPFQLVYLDP-PYGQGLAQQALAIIDK-- 142 (189)
Q Consensus 68 SrGA~~v~~vE~~~~a~~~lk~N~~~~~~-~~~~~ii~~D~~~~~~~~-~~~~fDiIf~DP-PY~~~~~~~~l~~l~~-- 142 (189)
|+|+ .|+..---++.+++++.-=.-++. +=|... .|.+.+... ...-|+++.+.| ||..-....++..|..
T Consensus 35 s~G~-ev~L~~~v~~~l~warnsG~i~~~~sWN~~~---kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er 110 (164)
T COG4996 35 SKGR-EVHLFPDVKETLKWARNSGYILGLASWNFED---KAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTER 110 (164)
T ss_pred CCCE-EEEECHHHHHHHHHHHHCCCEEEEEECCCHH---HHHHHHHHHCHHHHEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 8980-8997378999999987478389876527668---99999998363653788995378706779999999998851
Q ss_pred CCCCCCCEEEEEE
Q ss_conf 4888897499998
Q gi|254780405|r 143 EGWLEPNALVIIE 155 (189)
Q Consensus 143 ~~~L~~~gliiiE 155 (189)
+.-++|+-++++.
T Consensus 111 ~~~ikP~~Ivy~D 123 (164)
T COG4996 111 NQKIKPSEIVYLD 123 (164)
T ss_pred CCCCCCCEEEEEE
T ss_conf 6512743079982
No 485
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=33.20 E-value=13 Score=18.62 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=8.1
Q ss_pred CCCCCHHHHHCCCCCCHHHHHH
Q ss_conf 1222100110168733011100
Q gi|254780405|r 58 GTGSVGFEALSRGCHYVLFVDN 79 (189)
Q Consensus 58 GsG~lgiEalSrGA~~v~~vE~ 79 (189)
.+|.=+++++....-.++.+|.
T Consensus 31 ~~g~~a~~~~~~~~~DlvilDi 52 (226)
T PRK09836 31 DNGLNGYHLAMTGDYDLIILDI 52 (226)
T ss_pred CCHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999998518999999889
No 486
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=33.17 E-value=24 Score=16.97 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHC------------CCCC---CCCC--CCCHHHHHCCHHHHH
Q ss_conf 100012356676420013322100223445665--42100------------3444---4310--151343100028889
Q gi|254780405|r 77 VDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR--LGKIG------------NISP---FQLV--YLDPPYGQGLAQQAL 137 (189)
Q Consensus 77 vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~--~~~~~------------~~~~---fDiI--f~DPPY~~~~~~~~l 137 (189)
=|....+.+.+++-++.+++++++++--++--. -+... ...| ||== =-||||.--.|+++|
T Consensus 435 de~~~~S~~~A~~YL~~L~~~~KV~~~~~~yStTT~LS~GQ~KRLAL~~AyLE~RP~~~lDEWAADQDP~F~R~FY~ELL 514 (555)
T TIGR01194 435 DEKKQASLDNATTYLSRLELEDKVKVEDLNYSTTTDLSYGQRKRLALVNAYLEDRPVLLLDEWAADQDPAFKRVFYEELL 514 (555)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHCC
T ss_conf 66666545889999975262111466047633021011213688999987763487246532102687863321053237
Q ss_pred HHHHHCCCCCCCEEEEEECCC
Q ss_conf 888744888897499998177
Q gi|254780405|r 138 AIIDKEGWLEPNALVIIEEYA 158 (189)
Q Consensus 138 ~~l~~~~~L~~~gliiiE~~~ 158 (189)
.-|+..+ .+++|+-|.-
T Consensus 515 PDLKR~G----KTI~~I~HDD 531 (555)
T TIGR01194 515 PDLKRRG----KTILVISHDD 531 (555)
T ss_pred HHHHHCC----CEEEEEECCC
T ss_conf 1130078----7799980272
No 487
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=32.88 E-value=39 Score=15.74 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCCCCCHHH---HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH
Q ss_conf 012221001---10168733011100012356676420013322100223445665421003444431015134310002
Q gi|254780405|r 57 AGTGSVGFE---ALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGLA 133 (189)
Q Consensus 57 aGsG~lgiE---alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~~ 133 (189)
-|.|++|.- .|++.-..|+++-.. +.++.+++|=-.+.-...-..+...+... ......+||+|++-- .....
T Consensus 6 ~GaGAiG~~~a~~L~~~g~~V~lv~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~-~~~~~~~~D~viva~--Ks~~~ 81 (306)
T PRK12921 6 VGAGAVGGTFGARLLEAGRDVTFLGRS-ARAEALREKGLVIRSDHGDVTVPGPVITD-PEEITGPFDLVILAV--KAYQL 81 (306)
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHCCEEEEECCCEEEEECCCCCC-CHHHCCCCCEEEEEE--CCCCH
T ss_conf 992499999999998369988999700-09999997896999779769980610508-056568976899970--45677
Q ss_pred HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 888988874488889749999
Q gi|254780405|r 134 QQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 134 ~~~l~~l~~~~~L~~~gliii 154 (189)
++.++.+.. ++.+++.++.
T Consensus 82 ~~a~~~l~~--~~~~~t~il~ 100 (306)
T PRK12921 82 DAAIPDLKP--LVGEDTVIIP 100 (306)
T ss_pred HHHHHHHHH--HCCCCCEEEE
T ss_conf 999999986--3399948999
No 488
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=32.77 E-value=43 Score=15.50 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=38.2
Q ss_pred CCCEEEECCCCCCC---CHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHH
Q ss_conf 89678611001222---100110168733--011100012356676420013322-100223445665
Q gi|254780405|r 48 DSTRMLNIFAGTGS---VGFEALSRGCHY--VLFVDNNSESIRLIRRNSELLGVE-KNCNIFFRDVLR 109 (189)
Q Consensus 48 ~~~~vlDlfaGsG~---lgiEalSrGA~~--v~~vE~~~~a~~~lk~N~~~~~~~-~~~~ii~~D~~~ 109 (189)
.+..++||+||++. +=|+||-+-... -+.+|++.++++..-+++..-... -.+.-+++|...
T Consensus 76 ~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHH
T ss_conf 99769974688724589999999854997428865176999999998742404897558888753787
No 489
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=32.55 E-value=20 Score=17.42 Aligned_cols=21 Identities=38% Similarity=0.649 Sum_probs=11.2
Q ss_pred CCCCCCCCHHHHHCCHHHHHH
Q ss_conf 443101513431000288898
Q gi|254780405|r 118 PFQLVYLDPPYGQGLAQQALA 138 (189)
Q Consensus 118 ~fDiIf~DPPY~~~~~~~~l~ 138 (189)
+|-++..+|||+.+.....+.
T Consensus 2 ~~~I~vt~ppYg~q~a~~A~~ 22 (126)
T COG1553 2 KYTIVVTGPPYGTESAFSALR 22 (126)
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 699998059876377899999
No 490
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=32.28 E-value=29 Score=16.52 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCEEEEEEEECCEEE------ECCCCCCCCCCH---HHHHHHHHHHHHHCCCCCC--CCCEEEECCCCCCC
Q ss_conf 701998641088674------437888867785---8999999987763336455--89678611001222
Q gi|254780405|r 2 NKIRIIGGKFQRRLL------HTPQNRSIRPSD---SRTKKALFDILTHVYPVFL--DSTRMLNIFAGTGS 61 (189)
Q Consensus 2 ~~mrii~G~~kg~~l------~~~~~~~~RPt~---~~vrealFniL~~~~~~~~--~~~~vlDlfaGsG~ 61 (189)
..+++-+|.+-||.= ..++...+++=. .-+++..|+.|....-..+ +.-.+.|.|||++.
T Consensus 46 Gal~~~TG~~TGRSPkDkfiV~~~~t~~~i~W~~~Nkpi~~e~f~~L~~~~~~yl~~k~lfv~d~~~Ga~~ 116 (529)
T COG1866 46 GALRVDTGIYTGRSPKDKFIVRDDSTRDTIWWGTRNKPISPETFDRLKGDVTDYLSGKDLFVVDGFAGADP 116 (529)
T ss_pred CCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 63688505435779887468736663113565656665798999999999999862685799986505781
No 491
>PRK08264 short chain dehydrogenase; Validated
Probab=32.00 E-value=16 Score=18.01 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCCCCEEEECCCCCCC---CHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5589678611001222---100110168733011100012356
Q gi|254780405|r 46 FLDSTRMLNIFAGTGS---VGFEALSRGCHYVLFVDNNSESIR 85 (189)
Q Consensus 46 ~~~~~~vlDlfaGsG~---lgiEalSrGA~~v~~vE~~~~a~~ 85 (189)
+++|+.+|=-+|++|. +..+.+++||..|+....++...+
T Consensus 2 ~l~gK~alITGassGIG~aiA~~la~~Ga~~V~~~~r~~~~~~ 44 (235)
T PRK08264 2 DIKGKVVLVTGANRGIGRAFVEELLARGAAKVYAAARDPESVD 44 (235)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCC
T ss_conf 2799889992675499999999999869977999727840355
No 492
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=31.71 E-value=29 Score=16.52 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHH---H-CCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHH
Q ss_conf 89999999877633364558967861100122210011---0-1687330111000123566764200-13322100223
Q gi|254780405|r 29 SRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEA---L-SRGCHYVLFVDNNSESIRLIRRNSE-LLGVEKNCNIF 103 (189)
Q Consensus 29 ~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEa---l-SrGA~~v~~vE~~~~a~~~lk~N~~-~~~~~~~~~ii 103 (189)
..+.+++ .+ ++.+++|++++ .+.|||.+|..+ + ..|| +|+.+-.+.+.++-+.+-++ .++. ..+..
T Consensus 13 a~vekal----~~-~g~dl~g~~~~-V~G~tG~vG~~~A~~lA~~Ga-~v~lv~R~~ek~~~~a~~i~~r~g~--~~~~~ 83 (194)
T cd01078 13 AAAGKAL----EL-MGKDLKGKTAV-VLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGE--GVGAV 83 (194)
T ss_pred HHHHHHH----HH-HCCCCCCCEEE-EECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf 9999999----98-29986798899-985885789999999998399-7999958788899999999997098--73113
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 445665421003444431015134
Q gi|254780405|r 104 FRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 104 ~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
......-.. .-...-|+||.--+
T Consensus 84 ~~~~~~~~~-~~l~~adiV~~a~a 106 (194)
T cd01078 84 ETSDDAARA-AAIKGADVVFAAGA 106 (194)
T ss_pred CCCCHHHHH-HHHCCCCEEEECCH
T ss_conf 578877899-77466989996427
No 493
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.65 E-value=16 Score=17.99 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=48.2
Q ss_pred EEEECCCCCCCCH--HH--HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHH----HHHHHHHH-----CC
Q ss_conf 7861100122210--01--1016873301110001235667642001332--210022344----56654210-----03
Q gi|254780405|r 51 RMLNIFAGTGSVG--FE--ALSRGCHYVLFVDNNSESIRLIRRNSELLGV--EKNCNIFFR----DVLRLGKI-----GN 115 (189)
Q Consensus 51 ~vlDlfaGsG~lg--iE--alSrGA~~v~~vE~~~~a~~~lk~N~~~~~~--~~~~~ii~~----D~~~~~~~-----~~ 115 (189)
+|.=+ |+|.|| |- +++.|. .|+.+|.++++++..++.++..-- ..+...... .+...+.. ..
T Consensus 5 ~VaVi--GaG~MG~gIA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a 81 (288)
T PRK08293 5 KVTVA--GAGVLGSQIAFQTAFKGF-DVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQA 81 (288)
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 89998--978899999999995799-289998988999999999999999999705999178999998077305898998
Q ss_pred CCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 444431015134310002888988874488889749999
Q gi|254780405|r 116 ISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 116 ~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
....|+|+=-=|=+...-.+++..|.+ ..++++++.-
T Consensus 82 ~~~aDlViEav~E~l~iK~~lf~~le~--~~~~~~IlaS 118 (288)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEQLAE--VAPEKTIFAT 118 (288)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCEEEEE
T ss_conf 466999999780879999999999997--4677669986
No 494
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.62 E-value=16 Score=17.97 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCEEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 8967861100122---2100110168733011100012356676420013322100223445665
Q gi|254780405|r 48 DSTRMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 48 ~~~~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
+-+.+|=-+|++| +++...+..|+ +|+.++.+.+.++.+.+.++..+. ++..+.+|+.+
T Consensus 5 ~mKvalITGas~GIG~a~A~~la~~G~-~V~l~~R~~~~l~~~~~e~~~~g~--~~~~~~~Dvt~ 66 (241)
T PRK07454 5 SMPTALITGASRGIGKATALAFAKAGW-DLALVARSQDALEALAEELRSTGV--KVAAYSIDLSN 66 (241)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCC--CEEEEEEECCC
T ss_conf 998899917587899999999998799-899998999999999999996599--28999951899
No 495
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.51 E-value=17 Score=17.88 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCCHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 12221001----10168733011100012356676420013
Q gi|254780405|r 58 GTGSVGFE----ALSRGCHYVLFVDNNSESIRLIRRNSELL 94 (189)
Q Consensus 58 GsG~lgiE----alSrGA~~v~~vE~~~~a~~~lk~N~~~~ 94 (189)
|+|.||-. +++.|. .|+.+|.++++++..++.++.+
T Consensus 9 GaG~MG~~IA~~~a~~G~-~V~l~D~~~e~l~~~~~~i~~~ 48 (289)
T PRK09260 9 GAGVMGRGIAYVFASSGF-QTTLVDISQEQLASAQQEIESI 48 (289)
T ss_pred CCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHH
T ss_conf 968878999999996899-8899979989999999999999
No 496
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=31.41 E-value=25 Score=16.83 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7330111000123566764200133221002234456654210034444310151
Q gi|254780405|r 71 CHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125 (189)
Q Consensus 71 A~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~D 125 (189)
.++|..||=|+...+.+...++..+.+-..---..++.+.++ .+||+|.+|
T Consensus 1 M~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~----~~~DlvilD 51 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD----DSIDLLLLD 51 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----CCCCEEEEE
T ss_conf 988999969899999999999888999999899999999964----898999991
No 497
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=31.15 E-value=16 Score=17.97 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEECCCCCCCC
Q ss_conf 86110012221
Q gi|254780405|r 52 MLNIFAGTGSV 62 (189)
Q Consensus 52 vlDlfaGsG~l 62 (189)
|+||+||.|-+
T Consensus 62 FvDlGCGNGlL 72 (112)
T pfam07757 62 FVDIGCGNGLL 72 (112)
T ss_pred EEEECCCCHHH
T ss_conf 37714772289
No 498
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=31.15 E-value=23 Score=17.08 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCCCCEEEECCCCCC---CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 64558967861100122---21001101687330111000123566764200133221002234456654
Q gi|254780405|r 44 PVFLDSTRMLNIFAGTG---SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL 110 (189)
Q Consensus 44 ~~~~~~~~vlDlfaGsG---~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~ 110 (189)
...++|+.+|=-++++| +++...+..|| +|+.++.+....+...+-... ..++..+.+|+.+.
T Consensus 3 ~~~l~gKvalITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~ 68 (260)
T PRK12823 3 NQRFAGKVAVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELVAA---GGEALALTADLETY 68 (260)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHC---CCCEEEEECCCCCH
T ss_conf 8887999899948867899999999998799-999996946899999999854---99489998126885
No 499
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=31.05 E-value=46 Score=15.33 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred CHHH-HHCCCCCCHHHHHHHHHHH-------HHHHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf 1001-1016873301110001235-------6676420013-32210022344566542100344443101513431000
Q gi|254780405|r 62 VGFE-ALSRGCHYVLFVDNNSESI-------RLIRRNSELL-GVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQGL 132 (189)
Q Consensus 62 lgiE-alSrGA~~v~~vE~~~~a~-------~~lk~N~~~~-~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~~~ 132 (189)
+++| |.+||-++||.|++..-.- +++++-.+.. +++-.-..+-.-+.++.+.. ++||+|..+==|++-+
T Consensus 164 ~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P--~~FDViVt~NlFGDIL 241 (348)
T COG0473 164 FAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNP--EQFDVIVTSNLFGDIL 241 (348)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHH
T ss_conf 99999996079946898600105653678999999986118986144674889999986093--2067897765316888
Q ss_pred HHHHHHHHHHCCCCCCCEE
Q ss_conf 2888988874488889749
Q gi|254780405|r 133 AQQALAIIDKEGWLEPNAL 151 (189)
Q Consensus 133 ~~~~l~~l~~~~~L~~~gl 151 (189)
.+..-.+.-..+++-...+
T Consensus 242 SD~aa~l~GslGl~PSAni 260 (348)
T COG0473 242 SDEAAALTGSLGLAPSANL 260 (348)
T ss_pred HHHHHHHCCCCCCCCCCCC
T ss_conf 7688874376445765756
No 500
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=30.62 E-value=12 Score=18.68 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEECCCC-CCCCHHHHHCC-CCCCHHHHHHHH-------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 78611001-22210011016-873301110001-------------------2356676420013322100223445665
Q gi|254780405|r 51 RMLNIFAG-TGSVGFEALSR-GCHYVLFVDNNS-------------------ESIRLIRRNSELLGVEKNCNIFFRDVLR 109 (189)
Q Consensus 51 ~vlDlfaG-sG~lgiEalSr-GA~~v~~vE~~~-------------------~a~~~lk~N~~~~~~~~~~~ii~~D~~~ 109 (189)
+||=++|| .|+--++.|.| |..+++.+|.|. .-++.+++.++..+..-+++.+..++..
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 99999979899999999999379719999789875001464225898894922489999999856898389999456896
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 42100344443101
Q gi|254780405|r 110 LGKIGNISPFQLVY 123 (189)
Q Consensus 110 ~~~~~~~~~fDiIf 123 (189)
-......++||+|+
T Consensus 81 ~~~~~~~~~~dvvi 94 (143)
T cd01483 81 DNLDDFLDGVDLVI 94 (143)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 46999975999999
Done!