HHsearch alignment for GI: 254780405 and conserved domain: pfam00398

>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.23  E-value=1e-06  Score=60.73  Aligned_cols=101  Identities=19%  Similarity=0.333  Sum_probs=71.0

Q ss_pred             CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r   48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP  127 (189)
Q Consensus        48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP  127 (189)
T Consensus        30 ~~d~VlEIGPG~G~LT~~L~~~-~~~v~aiE~D~~l~~~L~~~~~~---~~~~~ii~~D~l~~d~-~~~~~~-~vvgNLP  103 (258)
T pfam00398        30 ESDTVLEIGPGKGALTEELAKR-AKQVVAIEIDPRLAKRLQKKLAL---HPNVEVVHQDFLKFSF-PKHEPF-LVVGNIP  103 (258)
T ss_pred             CCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC-CCCCCE-EEEECCC
T ss_conf             9997999799623999999961-69479995447799999986442---8977999663010575-457861-6894488


Q ss_pred             HHHCCHHHHHHHHHH-CCCCCCCEEEEEEC
Q ss_conf             310002888988874-48888974999981
Q gi|254780405|r  128 YGQGLAQQALAIIDK-EGWLEPNALVIIEE  156 (189)
Q Consensus       128 Y~~~~~~~~l~~l~~-~~~L~~~gliiiE~  156 (189)
T Consensus       104 Y~--Iss~il~~ll~~~~~~~~~~vlmvQk  131 (258)
T pfam00398       104 YN--ITTPIVKKLLFEPRFGRVKMLLVVQK  131 (258)
T ss_pred             CC--CCHHHHHHHHHCCCCCCCEEEEEEEH
T ss_conf             63--41789999997047672048999889