HHsearch alignment for GI: 254780405 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.23 E-value=1e-06 Score=60.73 Aligned_cols=101 Identities=19% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 89678611001222100110168733011100012356676420013322100223445665421003444431015134
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP 127 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DPP 127 (189)
T Consensus 30 ~~d~VlEIGPG~G~LT~~L~~~-~~~v~aiE~D~~l~~~L~~~~~~---~~~~~ii~~D~l~~d~-~~~~~~-~vvgNLP 103 (258)
T pfam00398 30 ESDTVLEIGPGKGALTEELAKR-AKQVVAIEIDPRLAKRLQKKLAL---HPNVEVVHQDFLKFSF-PKHEPF-LVVGNIP 103 (258)
T ss_pred CCCEEEEECCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC-CCCCCE-EEEECCC
T ss_conf 9997999799623999999961-69479995447799999986442---8977999663010575-457861-6894488
Q ss_pred HHHCCHHHHHHHHHH-CCCCCCCEEEEEEC
Q ss_conf 310002888988874-48888974999981
Q gi|254780405|r 128 YGQGLAQQALAIIDK-EGWLEPNALVIIEE 156 (189)
Q Consensus 128 Y~~~~~~~~l~~l~~-~~~L~~~gliiiE~ 156 (189)
T Consensus 104 Y~--Iss~il~~ll~~~~~~~~~~vlmvQk 131 (258)
T pfam00398 104 YN--ITTPIVKKLLFEPRFGRVKMLLVVQK 131 (258)
T ss_pred CC--CCHHHHHHHHHCCCCCCCEEEEEEEH
T ss_conf 63--41789999997047672048999889