HHsearch alignment for GI: 254780405 and conserved domain: pfam01269
>pfam01269 Fibrillarin Fibrillarin.
Probab=94.63 E-value=0.053 Score=32.76 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 778589999999877633364558967861100122210011016--87-330111000123566764200133221002
Q gi|254780405|r 25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCN 101 (189)
Q Consensus 25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ 101 (189)
T Consensus 52 ~P~RSKLaAail~g~~~-~~-i~~gskVLYLGAasGT-TVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~---~R~NIv 125 (229)
T pfam01269 52 NPFRSKLAAAILKGLDD-IP-IKPGSKVLYLGAASGT-TVSHVSDIVGPEGVVYAVEFSPRVGRELINVAK---KRPNIV 125 (229)
T ss_pred CCCCCHHHHHHHCCCCC-CC-CCCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---CCCCCE
T ss_conf 88701889999758755-68-5899879994477798-576788722889539999717355789999974---279944
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 234456654210-034444310151343100028889888744888897499998
Q gi|254780405|r 102 IFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE 155 (189)
Q Consensus 102 ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE 155 (189)
T Consensus 126 PIl~DAr~P~~Y~~lv~~VD~ifqDvaQ~-~Qa~i~~~--Na~~FLk~gG~~~l~ 177 (229)
T pfam01269 126 PILEDARHPQKYRMLVEMVDVIFADVAQP-DQARILAL--NAKYFLKNGGYFMIS 177 (229)
T ss_pred EEECCCCCHHHHHHHCCCCCEEEECCCCH-HHHHHHHH--HHHHHHHCCCEEEEE
T ss_conf 57667787567654255666899627877-78999999--999861269889999