HHsearch alignment for GI: 254780405 and conserved domain: pfam01269

>pfam01269 Fibrillarin Fibrillarin.
Probab=94.63  E-value=0.053  Score=32.76  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--CC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             778589999999877633364558967861100122210011016--87-330111000123566764200133221002
Q gi|254780405|r   25 RPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--GC-HYVLFVDNNSESIRLIRRNSELLGVEKNCN  101 (189)
Q Consensus        25 RPt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--GA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~  101 (189)
T Consensus        52 ~P~RSKLaAail~g~~~-~~-i~~gskVLYLGAasGT-TVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~---~R~NIv  125 (229)
T pfam01269        52 NPFRSKLAAAILKGLDD-IP-IKPGSKVLYLGAASGT-TVSHVSDIVGPEGVVYAVEFSPRVGRELINVAK---KRPNIV  125 (229)
T ss_pred             CCCCCHHHHHHHCCCCC-CC-CCCCCEEEEECCCCCC-CHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---CCCCCE
T ss_conf             88701889999758755-68-5899879994477798-576788722889539999717355789999974---279944


Q ss_pred             HHHHHHHHHHHH-CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             234456654210-034444310151343100028889888744888897499998
Q gi|254780405|r  102 IFFRDVLRLGKI-GNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIE  155 (189)
Q Consensus       102 ii~~D~~~~~~~-~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE  155 (189)
T Consensus       126 PIl~DAr~P~~Y~~lv~~VD~ifqDvaQ~-~Qa~i~~~--Na~~FLk~gG~~~l~  177 (229)
T pfam01269       126 PILEDARHPQKYRMLVEMVDVIFADVAQP-DQARILAL--NAKYFLKNGGYFMIS  177 (229)
T ss_pred             EEECCCCCHHHHHHHCCCCCEEEECCCCH-HHHHHHHH--HHHHHHHCCCEEEEE
T ss_conf             57667787567654255666899627877-78999999--999861269889999