HHsearch alignment for GI: 254780405 and conserved domain: pfam01728
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=97.08 E-value=0.00073 Score=43.79 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-----HHHCCC
Q ss_conf 36455896786110012221001101687-330111000123566764200133221002234456654-----210034
Q gi|254780405|r 43 YPVFLDSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL-----GKIGNI 116 (189)
Q Consensus 43 ~~~~~~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~-----~~~~~~ 116 (189)
T Consensus 16 ~~l~~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~------------~~~~~~~i~gDi~~~~~~~~i~~~~~ 83 (176)
T pfam01728 16 FGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK------------PIQGVTFLRGDITDPETLEKLLELLP 83 (176)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC------------CCCCCEEECCCCCCHHHHHHHHHHCC
T ss_conf 698879999999689997699999985668739999734465------------67784565167668789999999739
Q ss_pred CCCCCCCCCH-HHHHC--C------HHHHHHHH-HHCCCCCCCEEEEEE
Q ss_conf 4443101513-43100--0------28889888-744888897499998
Q gi|254780405|r 117 SPFQLVYLDP-PYGQG--L------AQQALAII-DKEGWLEPNALVIIE 155 (189)
Q Consensus 117 ~~fDiIf~DP-PY~~~--~------~~~~l~~l-~~~~~L~~~gliiiE 155 (189)
T Consensus 84 ~~~DlV~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K 132 (176)
T pfam01728 84 GKVDLVLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVK 132 (176)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9846897336656567733478999999999999999982437639999