HHsearch alignment for GI: 254780405 and conserved domain: pfam01739
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=90.61 E-value=0.59 Score=26.51 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCCEEEECCCCCC----CCHH---HHHCCCC---CCHHHHHHHHHHHHHHHHHHC------CCCCCCCHHHH--------
Q ss_conf 8967861100122----2100---1101687---330111000123566764200------13322100223--------
Q gi|254780405|r 48 DSTRMLNIFAGTG----SVGF---EALSRGC---HYVLFVDNNSESIRLIRRNSE------LLGVEKNCNIF-------- 103 (189)
Q Consensus 48 ~~~~vlDlfaGsG----~lgi---EalSrGA---~~v~~vE~~~~a~~~lk~N~~------~~~~~~~~~ii-------- 103 (189)
T Consensus 30 ~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~ 109 (194)
T pfam01739 30 RRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGY 109 (194)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCE
T ss_conf 95599973688995189999999997432578744999973988999999878988999845999999962860789948
Q ss_pred --HHHHHH--------HHHHCCCCCCCCCCCCHH---HHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf --445665--------421003444431015134---3100028889888744888897499998177888675788579
Q gi|254780405|r 104 --FRDVLR--------LGKIGNISPFQLVYLDPP---YGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHF 170 (189)
Q Consensus 104 --~~D~~~--------~~~~~~~~~fDiIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~ 170 (189)
T Consensus 110 ~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfCRNVlIYF~~~~~~~vl~~l~~--~L~~gG~L~lG~~Esl-~~~~~~F~~ 186 (194)
T pfam01739 110 RVKPEIKEMVLFEYHNLLDYPPLGDFDVIFCRNVLIYFDEETQRKILNRFAS--ALKPGGYLFLGHSESL-PGLTDLFEL 186 (194)
T ss_pred EECHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEECCHHHHHHHHHHHHH--HHCCCCEEEEECCCCC-CCCCCCCEE
T ss_conf 7688997116685466556887675039998021013799999999999999--8489949998075668-887868078
Q ss_pred EEEEEC
Q ss_conf 998341
Q gi|254780405|r 171 LQERKY 176 (189)
Q Consensus 171 ~~~k~y 176 (189)
T Consensus 187 v~~~~~ 192 (194)
T pfam01739 187 VGSTVY 192 (194)
T ss_pred CCCEEE
T ss_conf 476654