HHsearch alignment for GI: 254780405 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.96 E-value=9.3e-10 Score=78.76 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78589999999877633364558967861100122210011016--------8733011100012356676420013322
Q gi|254780405|r 26 PSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR--------GCHYVLFVDNNSESIRLIRRNSELLGVE 97 (189)
Q Consensus 26 Pt~~~vrealFniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSr--------GA~~v~~vE~~~~a~~~lk~N~~~~~~~ 97 (189)
T Consensus 29 fTPr~Vv~lmv~ll~p~-----~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312)
T pfam02384 29 YTPREVSKLIVELLEPK-----PGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312)
T ss_pred CCCHHHHHHHHHHHCCC-----CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88789999999982899-----9998821687733789999999998437855655636889989999999999984798
Q ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf -100223445665421003444431015134310
Q gi|254780405|r 98 -KNCNIFFRDVLRLGKIGNISPFQLVYLDPPYGQ 130 (189)
Q Consensus 98 -~~~~ii~~D~~~~~~~~~~~~fDiIf~DPPY~~ 130 (189)
T Consensus 104 ~~~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~ 137 (312)
T pfam02384 104 YNDFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQ 137 (312)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 8745521477655767665455118983786466