HHsearch alignment for GI: 254780405 and conserved domain: pfam03269
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=94.59 E-value=0.037 Score=33.68 Aligned_cols=110 Identities=27% Similarity=0.354 Sum_probs=53.5
Q ss_pred CCEEEECCCCCCCCHHH--HHCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCCC--
Q ss_conf 96786110012221001--101687330111000123566-7642001332210022344566-54210034444310--
Q gi|254780405|r 49 STRMLNIFAGTGSVGFE--ALSRGCHYVLFVDNNSESIRL-IRRNSELLGVEKNCNIFFRDVL-RLGKIGNISPFQLV-- 122 (189)
Q Consensus 49 ~~~vlDlfaGsG~lgiE--alSrGA~~v~~vE~~~~a~~~-lk~N~~~~~~~~~~~ii~~D~~-~~~~~~~~~~fDiI-- 122 (189)
T Consensus 2 gk~glVv--GS~~PWvE~~aL~~GA~~vlTvEYn~l~i~~~~~~rlss--------i~p~ef~~~~~~--~~~~FD~a~S 69 (177)
T pfam03269 2 GKSGVVI--GSMQPWVEVSALQNGASKILTVEYNKLTIQEEFRDRLSS--------ILPTDFAKNFKK--YAESFDFAAS 69 (177)
T ss_pred CCEEEEE--CCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCC--------CCHHHHHHHHHH--HCCCEEEEEE
T ss_conf 9518998--477539999999818873489972355566133210011--------568899999875--2353238999
Q ss_pred -----------CCCH--HHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCEE
Q ss_conf -----------1513--431000288898887448888974999981778886757885799983418569
Q gi|254780405|r 123 -----------YLDP--PYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTK 180 (189)
Q Consensus 123 -----------f~DP--PY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~~~~~~~~~~~~~~k~yG~t~ 180 (189)
T Consensus 70 fSSiEH~GLGRYGDpidp~--Gdl-k~m~~i~--~~Lk~~G~l~l~vPiG~-----d~v~fN~HRiYG~~R 130 (177)
T pfam03269 70 FSSIEHSGLGRYGDPIDPI--GDL-REMLKIK--CVLKKGGLLFLGLPLGT-----DAIIFNAHRIYGSVR 130 (177)
T ss_pred EEEEEECCCCCCCCCCCCC--CCH-HHHHHHH--HHHCCCCEEEEEECCCC-----CCEEEECCEEECHHH
T ss_conf 6124440565568977985--109-9999999--86178967999953777-----616870340234668