HHsearch alignment for GI: 254780405 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.60 E-value=4.4e-16 Score=116.28 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=85.0
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 896786110012221001101687-3301110001235667642001332210022344566542100344443101513
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGC-HYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDP 126 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA-~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiIf~DP 126 (189)
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~-~v~v~~~D~~~~~---~~~~fD~IvsNP 106 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLE-NGEVFWSDLYSAV---EPGKFDLIISNP 106 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCC---CCCCEEEEEECC
T ss_conf 899499977648298999999789867985154499999999999980998-4899974466657---788660899897
Q ss_pred HHHHCC---HHHHHHHHHH-CCCCCCCEEEEEECCCCCC
Q ss_conf 431000---2888988874-4888897499998177888
Q gi|254780405|r 127 PYGQGL---AQQALAIIDK-EGWLEPNALVIIEEYAGTC 161 (189)
Q Consensus 127 PY~~~~---~~~~l~~l~~-~~~L~~~gliiiE~~~~~~ 161 (189)
T Consensus 107 P~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~ 145 (170)
T pfam05175 107 PFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANRHLG 145 (170)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 721142032899999999999961649799999989999