HHsearch alignment for GI: 254780405 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=96.82 E-value=0.0013 Score=42.22 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=67.4
Q ss_pred CEEEECCCCCCCCH---HHHHCC-CC-CCHHHHHHHHHHHHHHHH--HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 67861100122210---011016-87-330111000123566764--200133221002234456654210034444310
Q gi|254780405|r 50 TRMLNIFAGTGSVG---FEALSR-GC-HYVLFVDNNSESIRLIRR--NSELLGVEKNCNIFFRDVLRLGKIGNISPFQLV 122 (189)
Q Consensus 50 ~~vlDlfaGsG~lg---iEalSr-GA-~~v~~vE~~~~a~~~lk~--N~~~~~~~~~~~ii~~D~~~~~~~~~~~~fDiI 122 (189)
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~--~~V~ii~~DMR~w~---~p~k~Di~ 262 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWG--DKVTLISSDMREWK---GPEKADIL 262 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCC--CCEEEEECCHHCCC---CCCCCCEE
T ss_conf 69999858964899999999998199669999956877999999985054317--80699908000579---98773589
Q ss_pred CCCH--HHH-HCCHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 1513--431-0002888988874488889749999
Q gi|254780405|r 123 YLDP--PYG-QGLAQQALAIIDKEGWLEPNALVII 154 (189)
Q Consensus 123 f~DP--PY~-~~~~~~~l~~l~~~~~L~~~gliii 154 (189)
T Consensus 263 VSELLGSFGDNELSPECLdg~q~--~lk~~gIsIP 295 (447)
T pfam05185 263 VSELLGSFGDNELSPECLDGAQR--FLKPDGISIP 295 (447)
T ss_pred EEECCCCCCCCCCCHHHHHHHHH--HCCCCCEEEC
T ss_conf 75211666665579778778997--4689846826