HHsearch alignment for GI: 254780405 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.17 E-value=0.00025 Score=46.50 Aligned_cols=125 Identities=14% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCCCCCHHHHHHHHHHH-HHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 88677858999999987-76333645589678611001222100110168733011100012356676420013322100
Q gi|254780405|r 22 RSIRPSDSRTKKALFDI-LTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNC 100 (189)
Q Consensus 22 ~~~RPt~~~vrealFni-L~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~ 100 (189)
T Consensus 21 ~~s~wYE~~r~~~~l~aaLp~-----~ry~~alE~GCa~G~lT~~LA~R-CdrLla~Dvs~~Av~~Ar~Rla--~~-~hV 91 (201)
T pfam05401 21 LDSNPFEQERHTQMLRLSLAQ-----GTIANALEVGCAAGAFTERLAPY-CQRLTVIDVMPEAIARARLRMK--KW-SHI 91 (201)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-----HHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHC--CC-CCC
T ss_conf 877687899999999986783-----43300204356624878999998-7467321362999999999855--79-982
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHCCHHH---HHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf 22344566542100344443101513-431000288---8988874488889749999817788
Q gi|254780405|r 101 NIFFRDVLRLGKIGNISPFQLVYLDP-PYGQGLAQQ---ALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 101 ~ii~~D~~~~~~~~~~~~fDiIf~DP-PY~~~~~~~---~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
T Consensus 92 ~v~~~~vp~~---wP~~~FDLIV~SEVlYYL~d~a~lr~~~~~~v--~~LaP~G~Lvfgsarda 150 (201)
T pfam05401 92 SWIVSDVQQF---STNELFDLIVVAEVLYYLGDVAEMRGAVRNLV--SMLAPDGQLVFGSARDA 150 (201)
T ss_pred EEEECCCCCC---CCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHH--HHHCCCCEEEEECCCCC
T ss_conf 8982566665---99888627975147786187999999999999--97189965997304510