HHsearch alignment for GI: 254780405 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.59 E-value=1.2e-15 Score=113.68 Aligned_cols=105 Identities=17% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCCEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-------------
Q ss_conf 8967861100122210011016873301110001235667642001332210022344566542100-------------
Q gi|254780405|r 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIG------------- 114 (189)
Q Consensus 48 ~~~~vlDlfaGsG~lgiEalSrGA~~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~~~~~~------------- 114 (189)
T Consensus 197 ~~~~vlDlYcG~Gtfsl-~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~-Nv~f~~~~~~~~~~~~~~~~~~~~~~~i~ 274 (353)
T pfam05958 197 SKGDLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCCCEEEEECCCCHHHH-HHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 89958998468888889-99864787999962599999999989986998-64999728999999875242233203666
Q ss_pred -CCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf -3444431015134310002888988874488889749999817788
Q gi|254780405|r 115 -NISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160 (189)
Q Consensus 115 -~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~ 160 (189)
T Consensus 275 ~~~~~~d~vvlDPP-R~G~~~~~~~~i~~~-----~rIvYVSCnP~T 315 (353)
T pfam05958 275 LKSYNCSTIFVDPP-RAGLDPDTCKLVQAY-----ERILYISCNPET 315 (353)
T ss_pred CCCCCCCCEEECCC-CCCCHHHHHHHHHCC-----CCEEEEECCHHH
T ss_conf 32246772584898-777739999998469-----968999489999