HHsearch alignment for GI: 254780405 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.70 E-value=2.6e-08 Score=70.19 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=87.4
Q ss_pred EECCEEEECCCCC---CCCCCHHHHHHHH-----------HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCC---C
Q ss_conf 1088674437888---8677858999999-----------987763336455896786110012221001101687---3
Q gi|254780405|r 10 KFQRRLLHTPQNR---SIRPSDSRTKKAL-----------FDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGC---H 72 (189)
Q Consensus 10 ~~kg~~l~~~~~~---~~RPt~~~vreal-----------FniL~~~~~~~~~~~~vlDlfaGsG~lgiEalSrGA---~ 72 (189)
T Consensus 51 k~~Gs~v~ss~g~~~~vl~Pt~e~~t~~mprrtQIiYpkD~s~I~~~ld-i~PG~~VlEaGtGSGsLT~-~Laravgp~G 128 (309)
T pfam08704 51 KRYGSKVSSSKGGFVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLE-LKPGSVVCESGTGSGSLSH-AIARTVAPTG 128 (309)
T ss_pred CCCCCEEEECCCCEEEEECCCHHHHHHCCCCCCCEECCCCHHHHHHHHC-CCCCCEEEEECCCCCHHHH-HHHHHHCCCC
T ss_conf 9997589938995799978999999844888773255600999999809-8999999983678429999-9999748886
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 3011100012356676420013322100223445665-42100344443101513431000288898887448888-974
Q gi|254780405|r 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLE-PNA 150 (189)
Q Consensus 73 ~v~~vE~~~~a~~~lk~N~~~~~~~~~~~ii~~D~~~-~~~~~~~~~fDiIf~DPPY~~~~~~~~l~~l~~~~~L~-~~g 150 (189)
T Consensus 129 ~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~VfLDlp~----PW~ai~~~~~--~Lk~~Gg 202 (309)
T pfam08704 129 HLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVFLDLPA----PWEAIPHAAK--ALKVEGG 202 (309)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEECCCC----HHHHHHHHHH--HHCCCCC
T ss_conf 599984478999999999987498750588985200136664456643589975899----7998899998--6068996
Q ss_pred EEE
Q ss_conf 999
Q gi|254780405|r 151 LVI 153 (189)
Q Consensus 151 lii 153 (189)
T Consensus 203 ~l~ 205 (309)
T pfam08704 203 RLC 205 (309)
T ss_pred EEE
T ss_conf 899