RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780405|ref|YP_003064818.1| hypothetical protein
CLIBASIA_01450 [Candidatus Liberibacter asiaticus str. psy62]
(189 letters)
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 170 bits (433), Expect = 2e-43
Identities = 72/189 (38%), Positives = 120/189 (63%), Gaps = 7/189 (3%)
Query: 3 KIRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSV 62
++RIIGGK++ R L TP RP+ R ++ALF+IL ++ R+L++FAG+G++
Sbjct: 1 QMRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDE---IEGARVLDLFAGSGAL 57
Query: 63 GFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR-LGKIGNISPFQL 121
G EALSRG V+FV+ + +++++++ N + LG+E + D LR L ++G PF L
Sbjct: 58 GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDL 117
Query: 122 VYLDPPYGQGLAQQALAII--DKEGWLEPNALVIIEEYAGTCI-SVGAAFHFLQERKYGD 178
V+LDPPY +GL + LA++ ++ GWL+P AL+++E + + A F +E+KYG
Sbjct: 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDVELPELPANFELHREKKYGQ 177
Query: 179 TKIYFFSYN 187
TK+ F+
Sbjct: 178 TKLTFYRRE 186
>gnl|CDD|146308 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 181
Score = 165 bits (419), Expect = 1e-41
Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 3/182 (1%)
Query: 4 IRIIGGKFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVG 63
+RIIGGK++ R L P RP+ R ++ALF+IL + L R+L++FAG+G++G
Sbjct: 1 MRIIGGKYKGRKLKVPPGPGTRPTTDRVREALFNILAPYFE--LGGARVLDLFAGSGALG 58
Query: 64 FEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVY 123
EALSRG V+FV+ + +++ ++ N E LG+E L G PF LV+
Sbjct: 59 LEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVF 118
Query: 124 LDPPYGQGLAQQALAIIDKEGWLEPNALVIIE-EYAGTCISVGAAFHFLQERKYGDTKIY 182
LDPPY +GL ++AL ++ ++GWL PNAL+++E E A ++E+KYG TK+
Sbjct: 119 LDPPYAKGLIEEALELLAEKGWLNPNALIVVETESDEELPEQPANLELVREKKYGQTKLA 178
Query: 183 FF 184
F+
Sbjct: 179 FY 180
>gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 45.7 bits (108), Expect = 7e-06
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEK--------NCNI 102
R+LN+F+ TG A G V VD + ++ R N+EL G++ +
Sbjct: 220 RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279
Query: 103 FFRDVLRLGKIGNISPFQLVYLDPP 127
+ R R G+ F L+ LDPP
Sbjct: 280 WLRKAERRGE-----KFDLIILDPP 299
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 44.5 bits (105), Expect = 2e-05
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105
L+ +L++ AGTG + A G VL VD + E++ + R N+E L + +
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVV--A 100
Query: 106 DVLRLGKIGNISPFQLVYLDPPYG 129
DV F V ++PP+G
Sbjct: 101 DVSDFR-----GKFDTVIMNPPFG 119
>gnl|CDD|31243 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 41.1 bits (96), Expect = 2e-04
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 10 KFQRRLLHTPQNRSIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSR 69
F++R D R +A+ + L V +L+ F GTG + EA
Sbjct: 164 AFEKRDPEKRPFFRPGSMDPRLARAMVN-LARVKR----GELVLDPFCGTGGILIEAGLM 218
Query: 70 GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPYG 129
G V+ D + +R + N E G+E + D L N + DPPYG
Sbjct: 219 GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS--VDAIATDPPYG 275
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRL 110
R+L++ GTG++ S V VD + ++ L R+ + N + D L
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA-AAALLADNVEVLKGDAEEL 59
Query: 111 GKIGNISPFQLVYLDPPYG------QGLAQQALAIIDKEGWL 146
F ++ DPP ++A ++ G L
Sbjct: 60 -PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 38.3 bits (89), Expect = 0.001
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 51 RMLNIFAGTGSVGFEALSRGCH-YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109
R+L++ AG G++G R ++ V+ E+ + +RN L +E+ + D+
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE 106
Query: 110 LGKIGNISPFQLVYLDPPY 128
K + F L+ +PPY
Sbjct: 107 FLKALVFASFDLIICNPPY 125
>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 36.8 bits (85), Expect = 0.004
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105
+ +L++FAG G +G V +D N +++ ++ N L VE
Sbjct: 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILG 245
Query: 106 DV 107
D
Sbjct: 246 DA 247
>gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction
only].
Length = 263
Score = 35.7 bits (82), Expect = 0.007
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 46 FLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105
+++ +++ F G G + +G + V+ +D + I R N+E+ GV
Sbjct: 92 CMNAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGVPDRITFICG 150
Query: 106 DVLRLGKIGNISP--FQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGTCIS 163
D L L + V+L PP+G G + + D E L+P I + +
Sbjct: 151 DFLDLASKLKADKIKYDCVFLSPPWG-GPSYLRADVYDLETHLKPMGTKIFKSSLKISPN 209
Query: 164 VGAAF 168
V A F
Sbjct: 210 V-AYF 213
>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 35.2 bits (81), Expect = 0.010
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 RMLNIFAGTGSVGFE-ALSRGCHYVLFVDNNSESIRLIRRNSELLGVE 97
R+ +I AGTGS+ E AL+ V+ ++ + E++ LI RN+ GV+
Sbjct: 37 RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 34.1 bits (78), Expect = 0.021
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR- 109
R+L+++ G G+ G L++ V V+ + E++ + N+ G++ N D
Sbjct: 296 RVLDLYCGVGTFGL-PLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEF 353
Query: 110 LGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEG 144
+V +DPP G ++ L + K
Sbjct: 354 TPAWWEGYKPDVVVVDPP-RAGADREVLKQLAKLK 387
>gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 185
Score = 32.6 bits (74), Expect = 0.058
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 47 LDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRD 106
++ ++ ++ G G + VL D + E++ + RN+E E ++ D
Sbjct: 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF--EVQIDLLQCD 104
Query: 107 VLRLGKIGNISPFQLVYLDPPYG 129
+L L G I F ++PP+G
Sbjct: 105 ILDLELKGGI--FDTAVINPPFG 125
>gnl|CDD|110191 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 171
Score = 32.7 bits (75), Expect = 0.061
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 48 DSTRMLNIFAGTGSVGFEALSRGCHYVLF-VDNNSESIRLIRRNSELLGVEKNCNIFFRD 106
+L+ F G+G++ EA G + L+ D + +R R N+E GV I F
Sbjct: 28 PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGD--KIEFVQ 85
Query: 107 VLRLGKIGNISPFQLVYLDPPYG 129
+ DPPYG
Sbjct: 86 ADAADLPLLNGSVDTIVTDPPYG 108
>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 31.4 bits (71), Expect = 0.15
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 51 RMLNIFAGTGSVGFEALSR-GCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109
++L++ G G +G + + VD N+ ++ R+N GVE N ++ ++
Sbjct: 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYE 219
Query: 110 LGKIGNISPFQLVYLDPPYGQGLA 133
+ F L+ +PP+ G A
Sbjct: 220 PVE----GKFDLIISNPPFHAGKA 239
>gnl|CDD|36467 KOG1253, KOG1253, KOG1253, tRNA methyltransferase [Translation,
ribosomal structure and biogenesis].
Length = 525
Score = 30.8 bits (69), Expect = 0.26
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 48 DSTRMLNIFAGTG--SVGFEALSRGCHYVLFVDNNSESIRLIRRNSELLGVEKNCNIFFR 105
S R+L + TG S+ + G V+ D N ++ I+RN EL GVE
Sbjct: 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHS 168
Query: 106 D--VLRLGKIGNISPFQLVYLDPPYG 129
D VL F ++ LD PYG
Sbjct: 169 DANVLMYEHPMVAKFFDVIDLD-PYG 193
>gnl|CDD|145316 pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA
methyltransferase.
Length = 254
Score = 30.8 bits (70), Expect = 0.27
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 56 FAGTGSVGFEALSRGCHYVLFVDNNSESIRL 86
FAG G+V FEA RG ++ D N + I L
Sbjct: 28 FAGGGAVFFEAKKRGKKVLIN-DINYDLINL 57
Score = 29.3 bits (66), Expect = 0.63
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 12/48 (25%)
Query: 85 RLIRRNSELLGVEKNCNIF----FRDVLRLGKIGNISPFQLVYLDPPY 128
L R +L +N F VL I + VYLDPPY
Sbjct: 147 ELKLRALKL----QNGATIECGDFDAVLLAANISD----DFVYLDPPY 186
>gnl|CDD|31929 COG1743, COG1743, Adenine-specific DNA methylase containing a
Zn-ribbon [DNA replication, recombination, and repair].
Length = 875
Score = 30.0 bits (67), Expect = 0.46
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 23 SIRPSDSRTKKALFDILTHVYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDN 79
S+R S+ + + F L+ FAG GS+ EAL G V N
Sbjct: 66 SLRLSEGEPHRLNPRWPQPIETPFEGPKL-LDPFAGGGSIPLEALRLGLEVVAVELN 121
>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 27.9 bits (63), Expect = 1.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 51 RMLNIFAGTGSVGFEALSRGCH-YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLR 109
++L++ G G +G R V VD N+ ++ R N G+E N +F+ D+
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLE-NGEVFWSDLYS 92
Query: 110 LGKIGNISPFQLVYLDPPYGQGLA 133
+ G F L+ +PP+ G A
Sbjct: 93 AVEPGK---FDLIISNPPFHAGKA 113
>gnl|CDD|72952 cd04480, RPA1_DBD_A_like, RPA1_DBD_A_like: A subgroup of
uncharacterized plant OB folds with similarity to the
second OB fold, the ssDNA-binding domain (DBD)-A, of
human RPA1 (also called RPA70). RPA1 is the large
subunit of Replication protein A (RPA). RPA is a nuclear
ssDNA-binding protein (SSB) which appears to be involved
in all aspects of DNA metabolism including replication,
recombination, and repair. RPA also mediates specific
interactions of various nuclear proteins. In animals,
plants, and fungi, RPA is a heterotrimer with subunits
of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In
addition to DBD-A, RPA1 contains three other OB folds:
DBD-B, DBD-C, and RPA1N. The major DNA binding activity
of RPA is associated with DBD-A and DBD-B of RPA1. RPA1
DBD-C is involved in trimerization. The ssDNA-binding
mechanism is believed to be multistep and to involve
conformational change..
Length = 86
Score = 27.2 bits (60), Expect = 3.2
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 73 YVLFVDNNSESIRLIRRNSELL----GVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128
+ ++ + + ES+ ++ + + + K FR +L+ GK IS F++ Y
Sbjct: 10 WDVYNNASGESLEMVLVDEKGNRIHATIPKRLAAKFRPLLKEGKWYTISNFEVAPNTGSY 69
>gnl|CDD|146448 pfam03813, Nrap, Nrap protein. Members of this family are
nucleolar RNA-associated proteins (Nrap) which are
highly conserved from yeast (Saccharomyces cerevisiae)
to human. In the mouse, Nrap is ubiquitously expressed
and is specifically localized in the nucleolus. Nrap is
a large nucleolar protein (of more than 1000 amino
acids). Nrap appears to be associated with ribosome
biogenesis by interacting with pre-rRNA primary
transcript.
Length = 930
Score = 26.9 bits (60), Expect = 3.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 44 PVFLDSTRMLNIFAGTGSVGFEAL 67
PV D +R LNI A ++ L
Sbjct: 258 PVLFDGSRGLNILAKMTPWSYQRL 281
>gnl|CDD|146638 pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2). Also
known as gamma-glutamylcysteine synthetase and gamma-ECS
(EC:6.3.2.2). This enzyme catalyses the first and rate
limiting step in de novo glutathione biosynthesis.
Members of this family are found in archaea, bacteria
and plants. May and Leaver discuss the possible
evolutionary origins of glutamate-cysteine ligase
enzymes in different organisms and suggest that it
evolved independently in different eukaryotes, from an
ancestral bacterial enzyme. They also state that
Arabidopsis thaliana gamma-glutamylcysteine synthetase
is structurally unrelated to mammalian, yeast and
Escherichia coli homologues. In plants, there are
separate cytosolic and chloroplast forms of the enzyme.
Length = 291
Score = 26.6 bits (59), Expect = 4.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 51 RMLNIFAGTGSVGFEALSRGCHYVLFVDNNSESI-RLIRR 89
RM G G + + GCH + +D++SE+I ++R
Sbjct: 108 RMYEYMPRVGVYGRQMMVAGCHVQVNIDSSSEAIMAVLRL 147
>gnl|CDD|30708 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 25.9 bits (57), Expect = 6.6
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 102 IFFRDVLRLGKIGNI----SPFQLVYLDPPYGQGLAQQA 136
I DV LGK G+I + +L P +GLA A
Sbjct: 4 ILLEDVKGLGKKGDIVEVKDGYARNFLIP---KGLAVPA 39
>gnl|CDD|113224 pfam04445, DUF548, Protein of unknown function (DUF548). Protein
of unknown function found in proteobacteria. In
Salmonella typhimurium, expression of this protein is
regulated by heat shock.
Length = 235
Score = 25.8 bits (57), Expect = 6.6
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 42 VYPVFLDSTRMLNIFAGTGSVGFEALSRGCHYVLFVDNN------SESIRLIRRNSELLG 95
P LD+T AG G F S GC L + + ++ ++ E+
Sbjct: 75 YLPTVLDAT------AGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGA 128
Query: 96 -VEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY 128
++ ++ + P +VYLDP Y
Sbjct: 129 WLQARLHLLHGSSADQLEPNIDQP-DVVYLDPMY 161
>gnl|CDD|34782 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 25.8 bits (56), Expect = 7.6
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 87 IRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPP---------YGQGLAQQAL 137
I N +C R L +G+ I F VYL +G
Sbjct: 353 IVANGVAFWANTSCTEEARKRLGIGRNRIICIFMKVYLIILLNAFFRALTFGLVDHYDFG 412
Query: 138 AIIDKEGWLEPNALVIIEEYAGTCISVGAAFHFLQERKYGDTKIYF 183
I++K + AL + EY + +G +F F Y I
Sbjct: 413 NIMNKGMY----ALHLDNEYQS-PLVIGISFIFHMSIAYTIISIVI 453
>gnl|CDD|33563 COG3768, COG3768, Predicted membrane protein [Function unknown].
Length = 350
Score = 25.7 bits (56), Expect = 7.7
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 23/72 (31%)
Query: 73 YVLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLDPPY---- 128
+V + ++RLI R +EL G+ LG +G + +LV + +
Sbjct: 228 FVAW-----RNLRLINRIAELYGI------------ELGYLGRLRLLRLVLANLAFAGAI 270
Query: 129 --GQGLAQQALA 138
G + Q L+
Sbjct: 271 EVGDSVGQDWLS 282
>gnl|CDD|36364 KOG1149, KOG1149, KOG1149, Glutamyl-tRNA synthetase
(mitochondrial) [Translation, ribosomal structure and
biogenesis].
Length = 524
Score = 25.7 bits (56), Expect = 7.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 5 RIIGGKFQRRLLHTPQNRSIRPSDSRTKKAL 35
R GGKF R+ T Q R IR S+ + L
Sbjct: 62 RKKGGKFILRIEDTDQKRLIRGSEEAIYEDL 92
>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
[Signal transduction mechanisms].
Length = 786
Score = 25.8 bits (56), Expect = 7.7
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 74 VLFVDNNSESIRLIRRNSELLGVEKNCNIFFRDVLRLGKIGNISPFQLVYLD 125
+L VD+N + ++ + LG E ++ L K + + ++++D
Sbjct: 669 ILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPH--SYDVIFMD 718
>gnl|CDD|35168 COG5609, COG5609, Uncharacterized conserved protein [Function
unknown].
Length = 124
Score = 25.6 bits (56), Expect = 8.3
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 103 FFRDVLRLGKIGNISPFQLVYLDPPYGQGLAQQALAIIDKEGWLEPNALVIIEEYAGT 160
F ++ + G ++P + L G+ + +Q + K G + IIE+ G
Sbjct: 35 FLDNMAIISLEGILTPAEYFLLSTKEGEIMVKQTRTELVKSG--YKDLPEIIEKIIGA 90
>gnl|CDD|32082 COG1898, RfbC, dTDP-4-dehydrorhamnose 3,5-epimerase and related
enzymes [Cell envelope biogenesis, outer membrane].
Length = 173
Score = 25.6 bits (56), Expect = 9.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 63 GFEALSRGCHYVLFVDN--NSESIRLIRRNSELLGVEKNCNIF 103
GF+ LS V V + E R I N +G++
Sbjct: 117 GFQVLSDDAEVVYKVTEEYDPEHERGIPWNDPTIGIDWPLKDP 159
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.143 0.429
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,413,558
Number of extensions: 126057
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 41
Length of query: 189
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,362,145
Effective search space: 440576645
Effective search space used: 440576645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)