HHsearch alignment for GI: 254780406 and conserved domain: COG0564
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].
Probab=99.97 E-value=3.6e-30 Score=209.83 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=163.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEEECCCCEEEECCE-------------EC-CCC
Q ss_conf 3446667734478899988687789999999869869999992406878079997999998-------------92-255
Q gi|254780406|r 5 NIVQENFTPQRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAAVNVMSTDHIEVDGV-------------PL-RKA 70 (354)
Q Consensus 5 ~~~~~~~~~~RL~K~la~~g~~SRr~a~~lI~~G~V~Vng~~v~~~~~~v~~~d~v~vdg~-------------~i-~~~ 70 (354)
T Consensus 4 ~~i~~~~~g~rld~~L~~l~~~sr~~~~~~i~~g~v~vNg~~v~-~~~~l~~gd~i~~~~~~~~~~~~~~~~~~~l~Ily 82 (289)
T COG0564 4 FEVPEEEAGQRLDKFLAKLLPISRSRIQKLIRKGRVRVNGKKVK-PSYKLKPGDVVRIPLPEEPEEEKLVPEDIPLDILY 82 (289)
T ss_pred EEECCHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCEEECCEECC-CCEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 88361113547999998725747999999988898899999835-87160899999953565543334565477877799
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCEEECCC----CCCEECCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCEEE
Q ss_conf 6438960278751563144333364421011023----43200266554332320222367641000123--44574047
Q gi|254780406|r 71 ERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI----FSRVISVGRLDINTEGLLLLTNDGGLARVLEL--PSTQWLRV 144 (354)
Q Consensus 71 ~~~~~~~~~KP~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~vgRLD~~t~GLlllTndg~l~~~l~~--p~~~~~k~ 144 (354)
T Consensus 83 ED~~llVvnKP~Gl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~vHRLDkdTSGlll~AK~~~a~~~l~~~f~~r~v~K~ 162 (289)
T COG0564 83 EDEDLLVVNKPAGLVVHPGGGHHEGTLVNALLRHCQDGVERPGIVHRLDKDTSGLLLVAKNREAARELSEQFKQRKVKKT 162 (289)
T ss_pred ECCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEE
T ss_conf 76999999889997167798875267999998752334786435148899985699999599999999999851866179
Q ss_pred EEEEECCCCCHHH--HHH---------HHHHHHCCC-EEEECCCEEEEECCCC-EEEEEEEEEECCHHHHHHHHHHCCCE
Q ss_conf 7521124556467--888---------740000087-6750343036402688-07999999518428999999983986
Q gi|254780406|r 145 YRVRFHGQVDQDK--LNL---------LKKGIVIQG-ICYGDMQVTLDTQKGS-NAWVTVGLREGKNREIKKVFEFFNWK 211 (354)
Q Consensus 145 Y~v~v~~~~~~~~--~~~---------~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~v~l~eGr~~qIrr~~~~~g~~ 211 (354)
T Consensus 163 Y~Alv~G~~~~~~~~i~~pi~r~~~~~~~~~v~~~~~gk~A~T~~~~~~~~~~~~tlv~~~~~TGRTHQIRvHl~~lghP 242 (289)
T COG0564 163 YLALVRGHLPEDEGTIDAPIGRDPKNRKKMAVVKEGSGKPAITHYEVLERFGDNYTLVELKPETGRTHQIRVHLAHLGHP 242 (289)
T ss_pred EEEEEECCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 99999685566687883541067677621699716889833799997206387628999996889851999999987997
Q ss_pred EEEEEEEEECCE
Q ss_conf 868897587054
Q gi|254780406|r 212 VNRLIRISYGPF 223 (354)
Q Consensus 212 V~~L~Rv~~G~~ 223 (354)
T Consensus 243 I~G--D~~Yg~~ 252 (289)
T COG0564 243 IVG--DPLYGGK 252 (289)
T ss_pred EEC--CCCCCCC
T ss_conf 438--7467874